Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4292 and Psyr_4293 overlap by 4 nucleotides Psyr_4293 and Psyr_4294 are separated by 139 nucleotides Psyr_4294 and Psyr_4295 are separated by 120 nucleotides
Psyr_4292: Psyr_4292 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 5,119,039 to 5,119,629
_4292
Psyr_4293: Psyr_4293 - Acyl-CoA thioesterase, at 5,119,626 to 5,120,495
_4293
Psyr_4294: Psyr_4294 - Histone deacetylase family protein, at 5,120,635 to 5,121,204
_4294
Psyr_4295: Psyr_4295 - Histone deacetylase superfamily, at 5,121,325 to 5,122,242
_4295
Position (kb) 5119
5120
5121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.774 kb on - strand at 5118.774 kb on - strand at 5118.774 kb on - strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.784 kb on - strand at 5118.784 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5119.026 kb on + strand at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.172 kb on + strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.173 kb on - strand, within Psyr_4292 at 5119.231 kb on + strand, within Psyr_4292 at 5119.231 kb on + strand, within Psyr_4292 at 5119.276 kb on + strand, within Psyr_4292 at 5119.276 kb on + strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.277 kb on - strand, within Psyr_4292 at 5119.327 kb on - strand, within Psyr_4292 at 5119.327 kb on - strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.328 kb on + strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.329 kb on - strand, within Psyr_4292 at 5119.357 kb on + strand, within Psyr_4292 at 5119.357 kb on + strand, within Psyr_4292 at 5119.358 kb on - strand, within Psyr_4292 at 5119.584 kb on + strand at 5119.585 kb on - strand at 5119.612 kb on + strand at 5119.613 kb on - strand at 5119.613 kb on - strand at 5119.613 kb on - strand at 5119.614 kb on + strand at 5119.614 kb on + strand at 5119.615 kb on - strand at 5119.615 kb on - strand at 5119.615 kb on - strand at 5119.615 kb on - strand at 5119.640 kb on + strand at 5119.641 kb on - strand at 5119.641 kb on - strand at 5119.703 kb on + strand at 5119.703 kb on + strand at 5119.703 kb on + strand at 5119.703 kb on + strand at 5119.757 kb on - strand, within Psyr_4293 at 5119.895 kb on - strand, within Psyr_4293 at 5119.895 kb on - strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.906 kb on + strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.907 kb on - strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.960 kb on + strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5119.961 kb on - strand, within Psyr_4293 at 5120.269 kb on + strand, within Psyr_4293 at 5120.420 kb on + strand at 5120.510 kb on + strand at 5120.510 kb on + strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.511 kb on - strand at 5120.529 kb on + strand at 5120.529 kb on + strand at 5120.530 kb on - strand at 5120.593 kb on + strand at 5120.594 kb on - strand at 5120.594 kb on - strand at 5120.601 kb on + strand at 5120.601 kb on + strand at 5120.602 kb on - strand at 5120.602 kb on - strand at 5120.602 kb on - strand at 5120.602 kb on - strand at 5120.602 kb on - strand at 5120.602 kb on - strand at 5120.602 kb on - strand at 5120.615 kb on + strand at 5120.616 kb on - strand at 5120.616 kb on - strand at 5120.974 kb on + strand, within Psyr_4294 at 5120.974 kb on + strand, within Psyr_4294 at 5120.975 kb on - strand, within Psyr_4294 at 5120.975 kb on - strand, within Psyr_4294 at 5120.975 kb on - strand, within Psyr_4294 at 5121.285 kb on + strand at 5121.286 kb on - strand at 5121.340 kb on - strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.343 kb on + strand at 5121.344 kb on - strand at 5121.344 kb on - strand at 5121.344 kb on - strand at 5121.344 kb on - strand at 5121.344 kb on - strand at 5121.344 kb on - strand at 5121.355 kb on + strand at 5121.355 kb on + strand at 5121.355 kb on + strand at 5121.356 kb on - strand at 5121.418 kb on + strand, within Psyr_4295 at 5121.418 kb on + strand, within Psyr_4295 at 5121.418 kb on + strand, within Psyr_4295 at 5121.419 kb on - strand, within Psyr_4295 at 5121.419 kb on - strand, within Psyr_4295 at 5121.455 kb on + strand, within Psyr_4295 at 5121.455 kb on + strand, within Psyr_4295 at 5121.456 kb on - strand, within Psyr_4295 at 5121.456 kb on - strand, within Psyr_4295
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 5,118,769 + +0.9 5,118,769 + +1.3 5,118,769 + -1.1 5,118,769 + +1.3 5,118,769 + -2.1 5,118,769 + +0.7 5,118,769 + +2.1 5,118,769 + +1.6 5,118,769 + -1.4 5,118,769 + -0.4 5,118,769 + -0.8 5,118,769 + +1.3 5,118,769 + -0.5 5,118,769 + -0.2 5,118,770 - -0.9 5,118,770 - +1.2 5,118,770 - +0.9 5,118,770 - +0.5 5,118,770 - -0.3 5,118,770 - -0.4 5,118,771 + -1.3 5,118,771 + +0.4 5,118,771 + -0.0 5,118,771 + -0.2 5,118,771 + -1.9 5,118,771 + -0.3 5,118,772 - -0.5 5,118,772 - +1.3 5,118,772 - +0.5 5,118,772 - -0.5 5,118,772 - +0.9 5,118,772 - -0.6 5,118,773 + -0.2 5,118,773 + +0.9 5,118,773 + +0.2 5,118,773 + -2.1 5,118,773 + +0.6 5,118,774 - -2.8 5,118,774 - +0.9 5,118,774 - +1.6 5,118,783 + -0.5 5,118,783 + +0.6 5,118,783 + -0.8 5,118,783 + -0.0 5,118,784 - +0.3 5,118,784 - -1.3 5,118,834 - +0.0 5,118,834 - -1.1 5,118,946 + -1.6 5,118,946 + -1.0 5,118,946 + +1.2 5,118,946 + +0.2 5,118,946 + +0.7 5,118,948 + -2.7 5,118,948 + +0.4 5,118,948 + -1.7 5,118,948 + +1.8 5,118,960 + -1.2 5,118,960 + +0.9 5,118,960 + -1.3 5,118,960 + +0.5 5,119,026 + -0.8 5,119,172 + Psyr_4292 0.23 -3.3 5,119,172 + Psyr_4292 0.23 -2.0 5,119,172 + Psyr_4292 0.23 +0.7 5,119,172 + Psyr_4292 0.23 +2.1 5,119,172 + Psyr_4292 0.23 -0.7 5,119,172 + Psyr_4292 0.23 -0.3 5,119,172 + Psyr_4292 0.23 +3.5 5,119,173 - Psyr_4292 0.23 +0.9 5,119,173 - Psyr_4292 0.23 +0.1 5,119,173 - Psyr_4292 0.23 -0.2 5,119,173 - Psyr_4292 0.23 -0.6 5,119,173 - Psyr_4292 0.23 +1.1 5,119,173 - Psyr_4292 0.23 -0.2 5,119,231 + Psyr_4292 0.32 -1.2 5,119,231 + Psyr_4292 0.32 -0.4 5,119,276 + Psyr_4292 0.40 +1.7 5,119,276 + Psyr_4292 0.40 -1.4 5,119,277 - Psyr_4292 0.40 -1.7 5,119,277 - Psyr_4292 0.40 -0.2 5,119,277 - Psyr_4292 0.40 -0.1 5,119,327 - Psyr_4292 0.49 -2.0 5,119,327 - Psyr_4292 0.49 +0.6 5,119,328 + Psyr_4292 0.49 +1.9 5,119,328 + Psyr_4292 0.49 +1.7 5,119,328 + Psyr_4292 0.49 -0.3 5,119,328 + Psyr_4292 0.49 +1.1 5,119,328 + Psyr_4292 0.49 +2.2 5,119,328 + Psyr_4292 0.49 -2.0 5,119,328 + Psyr_4292 0.49 -0.4 5,119,328 + Psyr_4292 0.49 +0.8 5,119,328 + Psyr_4292 0.49 +0.2 5,119,328 + Psyr_4292 0.49 +1.2 5,119,328 + Psyr_4292 0.49 -0.0 5,119,328 + Psyr_4292 0.49 -1.4 5,119,328 + Psyr_4292 0.49 +1.1 5,119,328 + Psyr_4292 0.49 +0.1 5,119,329 - Psyr_4292 0.49 -0.8 5,119,329 - Psyr_4292 0.49 +0.4 5,119,329 - Psyr_4292 0.49 +0.4 5,119,329 - Psyr_4292 0.49 +0.9 5,119,329 - Psyr_4292 0.49 -1.5 5,119,329 - Psyr_4292 0.49 +2.0 5,119,329 - Psyr_4292 0.49 -2.0 5,119,329 - Psyr_4292 0.49 -0.3 5,119,329 - Psyr_4292 0.49 -0.1 5,119,329 - Psyr_4292 0.49 +4.5 5,119,329 - Psyr_4292 0.49 +0.9 5,119,329 - Psyr_4292 0.49 +1.9 5,119,329 - Psyr_4292 0.49 -0.2 5,119,329 - Psyr_4292 0.49 -0.1 5,119,329 - Psyr_4292 0.49 -0.8 5,119,357 + Psyr_4292 0.54 +0.8 5,119,357 + Psyr_4292 0.54 +3.4 5,119,358 - Psyr_4292 0.54 -0.3 5,119,584 + -0.6 5,119,585 - -0.5 5,119,612 + +1.2 5,119,613 - -1.2 5,119,613 - +0.0 5,119,613 - +0.2 5,119,614 + -0.1 5,119,614 + -1.2 5,119,615 - -1.8 5,119,615 - +0.3 5,119,615 - -0.8 5,119,615 - -1.4 5,119,640 + -0.7 5,119,641 - +0.2 5,119,641 - +0.8 5,119,703 + -0.1 5,119,703 + -2.4 5,119,703 + -0.2 5,119,703 + +0.7 5,119,757 - Psyr_4293 0.15 +0.8 5,119,895 - Psyr_4293 0.31 -0.7 5,119,895 - Psyr_4293 0.31 -0.5 5,119,906 + Psyr_4293 0.32 -0.5 5,119,906 + Psyr_4293 0.32 -0.7 5,119,906 + Psyr_4293 0.32 -1.9 5,119,907 - Psyr_4293 0.32 -0.8 5,119,907 - Psyr_4293 0.32 -0.4 5,119,907 - Psyr_4293 0.32 +0.3 5,119,907 - Psyr_4293 0.32 +0.3 5,119,907 - Psyr_4293 0.32 +2.7 5,119,960 + Psyr_4293 0.38 +0.8 5,119,960 + Psyr_4293 0.38 -0.4 5,119,960 + Psyr_4293 0.38 +0.9 5,119,961 - Psyr_4293 0.39 -0.4 5,119,961 - Psyr_4293 0.39 +0.5 5,119,961 - Psyr_4293 0.39 -0.6 5,119,961 - Psyr_4293 0.39 -0.4 5,119,961 - Psyr_4293 0.39 -2.2 5,120,269 + Psyr_4293 0.74 -2.4 5,120,420 + +0.8 5,120,510 + +1.5 5,120,510 + +0.7 5,120,511 - +0.8 5,120,511 - -0.3 5,120,511 - +1.1 5,120,511 - -3.3 5,120,529 + -1.0 5,120,529 + +1.0 5,120,530 - +0.1 5,120,593 + +0.9 5,120,594 - +2.9 5,120,594 - +0.8 5,120,601 + -0.2 5,120,601 + -0.7 5,120,602 - -1.1 5,120,602 - -0.6 5,120,602 - -0.6 5,120,602 - -1.4 5,120,602 - -0.2 5,120,602 - +0.2 5,120,602 - +0.6 5,120,615 + -1.0 5,120,616 - -0.1 5,120,616 - +0.3 5,120,974 + Psyr_4294 0.59 +1.5 5,120,974 + Psyr_4294 0.59 +0.6 5,120,975 - Psyr_4294 0.60 +0.8 5,120,975 - Psyr_4294 0.60 +1.2 5,120,975 - Psyr_4294 0.60 -0.9 5,121,285 + +1.9 5,121,286 - -0.3 5,121,340 - +2.1 5,121,343 + -0.1 5,121,343 + -1.1 5,121,343 + +1.1 5,121,343 + -2.5 5,121,343 + +0.2 5,121,343 + -0.1 5,121,343 + +0.1 5,121,343 + -2.4 5,121,343 + -2.0 5,121,343 + -2.5 5,121,343 + -0.8 5,121,344 - -0.0 5,121,344 - -1.8 5,121,344 - +1.1 5,121,344 - -2.3 5,121,344 - +2.4 5,121,344 - -0.0 5,121,355 + -1.6 5,121,355 + -1.5 5,121,355 + +0.2 5,121,356 - -0.4 5,121,418 + Psyr_4295 0.10 +0.4 5,121,418 + Psyr_4295 0.10 +0.2 5,121,418 + Psyr_4295 0.10 +0.3 5,121,419 - Psyr_4295 0.10 -0.7 5,121,419 - Psyr_4295 0.10 +1.4 5,121,455 + Psyr_4295 0.14 -0.7 5,121,455 + Psyr_4295 0.14 -1.0 5,121,456 - Psyr_4295 0.14 -1.3 5,121,456 - Psyr_4295 0.14 -1.2
Or see this region's nucleotide sequence