Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4068

Experiment: apoplastic; Green bean; 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4065 and Psyr_4066 are separated by 20 nucleotidesPsyr_4066 and Psyr_4067 overlap by 4 nucleotidesPsyr_4067 and Psyr_4068 are separated by 4 nucleotidesPsyr_4068 and Psyr_4069 are separated by 200 nucleotides Psyr_4065: Psyr_4065 - Protein of unknown function DUF1513, at 4,849,605 to 4,850,711 _4065 Psyr_4066: Psyr_4066 - conserved hypothetical protein, at 4,850,732 to 4,850,959 _4066 Psyr_4067: Psyr_4067 - Lipopolysaccharide kinase, at 4,850,956 to 4,851,678 _4067 Psyr_4068: Psyr_4068 - conserved hypothetical protein, at 4,851,683 to 4,852,363 _4068 Psyr_4069: Psyr_4069 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,852,564 to 4,853,853 _4069 Position (kb) 4851 4852 4853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4850.709 kb on + strandat 4850.713 kb on + strandat 4850.713 kb on + strandat 4850.713 kb on + strandat 4850.714 kb on - strandat 4850.714 kb on - strandat 4850.714 kb on - strandat 4850.714 kb on - strandat 4850.766 kb on + strand, within Psyr_4066at 4850.766 kb on + strand, within Psyr_4066at 4850.766 kb on + strand, within Psyr_4066at 4850.766 kb on + strand, within Psyr_4066at 4850.766 kb on + strandat 4850.766 kb on + strand, within Psyr_4066at 4850.766 kb on + strand, within Psyr_4066at 4850.766 kb on + strand, within Psyr_4066at 4850.767 kb on - strand, within Psyr_4066at 4850.767 kb on - strand, within Psyr_4066at 4850.767 kb on - strand, within Psyr_4066at 4850.929 kb on + strand, within Psyr_4066at 4850.952 kb on - strandat 4850.977 kb on - strandat 4850.977 kb on - strandat 4851.005 kb on + strandat 4851.005 kb on + strandat 4851.063 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.185 kb on + strand, within Psyr_4067at 4851.186 kb on - strand, within Psyr_4067at 4851.186 kb on - strand, within Psyr_4067at 4851.186 kb on - strand, within Psyr_4067at 4851.186 kb on - strand, within Psyr_4067at 4851.260 kb on + strand, within Psyr_4067at 4851.260 kb on + strand, within Psyr_4067at 4851.260 kb on + strand, within Psyr_4067at 4851.261 kb on - strand, within Psyr_4067at 4851.261 kb on - strand, within Psyr_4067at 4851.261 kb on - strand, within Psyr_4067at 4851.261 kb on - strand, within Psyr_4067at 4851.454 kb on + strand, within Psyr_4067at 4851.455 kb on - strand, within Psyr_4067at 4851.455 kb on - strand, within Psyr_4067at 4851.492 kb on - strand, within Psyr_4067at 4851.492 kb on - strand, within Psyr_4067at 4851.495 kb on + strand, within Psyr_4067at 4851.495 kb on + strand, within Psyr_4067at 4851.495 kb on + strand, within Psyr_4067at 4851.495 kb on + strand, within Psyr_4067at 4851.496 kb on - strand, within Psyr_4067at 4851.496 kb on - strand, within Psyr_4067at 4851.496 kb on - strand, within Psyr_4067at 4851.496 kb on - strand, within Psyr_4067at 4851.496 kb on - strand, within Psyr_4067at 4851.496 kb on - strand, within Psyr_4067at 4851.518 kb on + strand, within Psyr_4067at 4851.518 kb on + strand, within Psyr_4067at 4851.684 kb on + strandat 4851.691 kb on + strandat 4851.691 kb on + strandat 4851.691 kb on + strandat 4851.691 kb on + strandat 4851.691 kb on + strandat 4851.691 kb on + strandat 4851.692 kb on - strandat 4851.692 kb on - strandat 4851.692 kb on - strandat 4851.692 kb on - strandat 4851.696 kb on - strandat 4851.696 kb on - strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.720 kb on + strandat 4851.720 kb on + strandat 4851.720 kb on + strandat 4851.721 kb on - strandat 4851.721 kb on - strandat 4851.721 kb on - strandat 4851.721 kb on - strandat 4851.721 kb on - strandat 4851.816 kb on + strand, within Psyr_4068at 4851.944 kb on + strand, within Psyr_4068at 4851.945 kb on - strand, within Psyr_4068at 4852.008 kb on - strand, within Psyr_4068at 4852.058 kb on + strand, within Psyr_4068at 4852.068 kb on - strand, within Psyr_4068at 4852.121 kb on - strand, within Psyr_4068at 4852.279 kb on + strand, within Psyr_4068at 4852.302 kb on + strandat 4852.303 kb on - strandat 4852.326 kb on + strandat 4852.327 kb on - strandat 4852.397 kb on + strandat 4852.397 kb on + strandat 4852.397 kb on + strandat 4852.398 kb on - strandat 4852.398 kb on - strandat 4852.453 kb on - strandat 4852.549 kb on + strandat 4852.550 kb on - strandat 4852.650 kb on + strandat 4852.650 kb on + strandat 4852.650 kb on + strandat 4852.651 kb on - strandat 4852.651 kb on - strandat 4852.651 kb on - strandat 4852.651 kb on - strandat 4852.807 kb on + strand, within Psyr_4069at 4852.922 kb on + strand, within Psyr_4069at 4852.922 kb on + strand, within Psyr_4069at 4852.922 kb on + strand, within Psyr_4069at 4852.923 kb on - strand, within Psyr_4069at 4852.923 kb on - strand, within Psyr_4069at 4853.182 kb on - strand, within Psyr_4069at 4853.208 kb on + strand, within Psyr_4069at 4853.208 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.214 kb on + strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069at 4853.215 kb on - strand, within Psyr_4069

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days
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4,850,709 + +0.5
4,850,713 + +1.0
4,850,713 + -2.2
4,850,713 + -1.1
4,850,714 - +0.4
4,850,714 - -1.3
4,850,714 - +1.5
4,850,714 - +0.4
4,850,766 + Psyr_4066 0.15 -0.7
4,850,766 + Psyr_4066 0.15 +0.6
4,850,766 + Psyr_4066 0.15 -2.8
4,850,766 + Psyr_4066 0.15 +1.0
4,850,766 + +0.6
4,850,766 + Psyr_4066 0.15 -0.9
4,850,766 + Psyr_4066 0.15 -1.2
4,850,766 + Psyr_4066 0.15 -0.7
4,850,767 - Psyr_4066 0.15 +0.2
4,850,767 - Psyr_4066 0.15 -0.1
4,850,767 - Psyr_4066 0.15 +0.0
4,850,929 + Psyr_4066 0.86 -2.1
4,850,952 - -1.8
4,850,977 - +1.6
4,850,977 - +0.1
4,851,005 + -0.8
4,851,005 + +3.6
4,851,063 + Psyr_4067 0.15 +0.5
4,851,185 + Psyr_4067 0.32 -1.1
4,851,185 + Psyr_4067 0.32 -0.6
4,851,185 + Psyr_4067 0.32 -1.4
4,851,185 + Psyr_4067 0.32 +0.6
4,851,185 + Psyr_4067 0.32 -1.9
4,851,185 + Psyr_4067 0.32 -1.4
4,851,185 + Psyr_4067 0.32 -1.6
4,851,185 + Psyr_4067 0.32 +0.1
4,851,185 + Psyr_4067 0.32 -0.0
4,851,185 + Psyr_4067 0.32 -1.9
4,851,185 + Psyr_4067 0.32 -1.7
4,851,186 - Psyr_4067 0.32 -1.2
4,851,186 - Psyr_4067 0.32 -0.4
4,851,186 - Psyr_4067 0.32 -2.9
4,851,186 - Psyr_4067 0.32 +0.6
4,851,260 + Psyr_4067 0.42 -0.8
4,851,260 + Psyr_4067 0.42 -2.5
4,851,260 + Psyr_4067 0.42 -0.4
4,851,261 - Psyr_4067 0.42 -1.7
4,851,261 - Psyr_4067 0.42 -0.3
4,851,261 - Psyr_4067 0.42 -0.9
4,851,261 - Psyr_4067 0.42 +0.5
4,851,454 + Psyr_4067 0.69 -0.9
4,851,455 - Psyr_4067 0.69 -1.3
4,851,455 - Psyr_4067 0.69 -0.4
4,851,492 - Psyr_4067 0.74 -1.2
4,851,492 - Psyr_4067 0.74 -0.5
4,851,495 + Psyr_4067 0.75 -0.7
4,851,495 + Psyr_4067 0.75 -0.6
4,851,495 + Psyr_4067 0.75 +0.6
4,851,495 + Psyr_4067 0.75 +1.3
4,851,496 - Psyr_4067 0.75 -0.2
4,851,496 - Psyr_4067 0.75 +0.7
4,851,496 - Psyr_4067 0.75 -1.4
4,851,496 - Psyr_4067 0.75 -2.0
4,851,496 - Psyr_4067 0.75 -3.2
4,851,496 - Psyr_4067 0.75 -2.7
4,851,518 + Psyr_4067 0.78 +0.1
4,851,518 + Psyr_4067 0.78 -0.7
4,851,684 + -1.4
4,851,691 + -0.7
4,851,691 + -1.2
4,851,691 + -1.2
4,851,691 + -0.6
4,851,691 + -0.6
4,851,691 + +0.1
4,851,692 - -0.3
4,851,692 - +1.7
4,851,692 - -0.4
4,851,692 - -0.0
4,851,696 - +0.5
4,851,696 - +0.9
4,851,702 + +0.9
4,851,702 + -1.6
4,851,702 + +0.1
4,851,702 + +0.1
4,851,702 + -1.7
4,851,702 + +1.8
4,851,702 + -2.7
4,851,702 + -1.7
4,851,702 + -2.4
4,851,702 + +1.4
4,851,702 + -0.3
4,851,702 + -0.6
4,851,702 + +0.1
4,851,703 - +0.6
4,851,703 - -0.0
4,851,703 - +1.6
4,851,703 - +0.5
4,851,703 - -1.8
4,851,703 - -1.0
4,851,703 - -0.1
4,851,703 - -2.1
4,851,703 - +0.1
4,851,703 - +1.6
4,851,703 - -0.6
4,851,703 - -1.6
4,851,703 - -0.0
4,851,720 + -1.9
4,851,720 + -1.7
4,851,720 + +0.4
4,851,721 - +1.1
4,851,721 - +0.9
4,851,721 - -1.9
4,851,721 - +0.9
4,851,721 - +1.4
4,851,816 + Psyr_4068 0.20 -0.6
4,851,944 + Psyr_4068 0.38 -0.8
4,851,945 - Psyr_4068 0.38 -2.0
4,852,008 - Psyr_4068 0.48 -2.1
4,852,058 + Psyr_4068 0.55 +1.6
4,852,068 - Psyr_4068 0.57 -0.0
4,852,121 - Psyr_4068 0.64 +0.3
4,852,279 + Psyr_4068 0.88 -1.8
4,852,302 + -0.2
4,852,303 - -3.4
4,852,326 + +0.3
4,852,327 - +0.1
4,852,397 + +1.4
4,852,397 + -1.3
4,852,397 + +1.6
4,852,398 - +1.0
4,852,398 - +1.7
4,852,453 - -0.4
4,852,549 + +0.0
4,852,550 - -0.6
4,852,650 + -1.4
4,852,650 + +0.3
4,852,650 + -0.6
4,852,651 - -0.6
4,852,651 - -0.1
4,852,651 - -0.9
4,852,651 - -0.5
4,852,807 + Psyr_4069 0.19 -0.5
4,852,922 + Psyr_4069 0.28 -0.7
4,852,922 + Psyr_4069 0.28 +0.8
4,852,922 + Psyr_4069 0.28 -0.9
4,852,923 - Psyr_4069 0.28 -1.4
4,852,923 - Psyr_4069 0.28 -0.2
4,853,182 - Psyr_4069 0.48 +0.7
4,853,208 + Psyr_4069 0.50 +0.3
4,853,208 + Psyr_4069 0.50 -1.6
4,853,214 + Psyr_4069 0.50 -3.1
4,853,214 + Psyr_4069 0.50 -1.7
4,853,214 + Psyr_4069 0.50 -0.9
4,853,214 + Psyr_4069 0.50 -0.4
4,853,214 + Psyr_4069 0.50 +0.4
4,853,214 + Psyr_4069 0.50 -1.7
4,853,214 + Psyr_4069 0.50 +1.1
4,853,214 + Psyr_4069 0.50 +0.4
4,853,214 + Psyr_4069 0.50 -1.2
4,853,214 + Psyr_4069 0.50 -2.4
4,853,215 - Psyr_4069 0.50 -0.4
4,853,215 - Psyr_4069 0.50 -0.4
4,853,215 - Psyr_4069 0.50 -3.4
4,853,215 - Psyr_4069 0.50 -2.0
4,853,215 - Psyr_4069 0.50 -1.5
4,853,215 - Psyr_4069 0.50 -1.0
4,853,215 - Psyr_4069 0.50 -2.2
4,853,215 - Psyr_4069 0.50 -0.9
4,853,215 - Psyr_4069 0.50 +0.4
4,853,215 - Psyr_4069 0.50 +1.1
4,853,215 - Psyr_4069 0.50 -1.9
4,853,215 - Psyr_4069 0.50 -3.2

Or see this region's nucleotide sequence