Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4065 and Psyr_4066 are separated by 20 nucleotides Psyr_4066 and Psyr_4067 overlap by 4 nucleotides Psyr_4067 and Psyr_4068 are separated by 4 nucleotides Psyr_4068 and Psyr_4069 are separated by 200 nucleotides
Psyr_4065: Psyr_4065 - Protein of unknown function DUF1513, at 4,849,605 to 4,850,711
_4065
Psyr_4066: Psyr_4066 - conserved hypothetical protein, at 4,850,732 to 4,850,959
_4066
Psyr_4067: Psyr_4067 - Lipopolysaccharide kinase, at 4,850,956 to 4,851,678
_4067
Psyr_4068: Psyr_4068 - conserved hypothetical protein, at 4,851,683 to 4,852,363
_4068
Psyr_4069: Psyr_4069 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,852,564 to 4,853,853
_4069
Position (kb)
4851
4852
4853 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4850.709 kb on + strand at 4850.713 kb on + strand at 4850.713 kb on + strand at 4850.713 kb on + strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.929 kb on + strand, within Psyr_4066 at 4850.952 kb on - strand at 4850.977 kb on - strand at 4850.977 kb on - strand at 4851.005 kb on + strand at 4851.005 kb on + strand at 4851.063 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.454 kb on + strand, within Psyr_4067 at 4851.455 kb on - strand, within Psyr_4067 at 4851.455 kb on - strand, within Psyr_4067 at 4851.492 kb on - strand, within Psyr_4067 at 4851.492 kb on - strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.518 kb on + strand, within Psyr_4067 at 4851.518 kb on + strand, within Psyr_4067 at 4851.684 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.696 kb on - strand at 4851.696 kb on - strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.720 kb on + strand at 4851.720 kb on + strand at 4851.720 kb on + strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.816 kb on + strand, within Psyr_4068 at 4851.944 kb on + strand, within Psyr_4068 at 4851.945 kb on - strand, within Psyr_4068 at 4852.008 kb on - strand, within Psyr_4068 at 4852.058 kb on + strand, within Psyr_4068 at 4852.068 kb on - strand, within Psyr_4068 at 4852.121 kb on - strand, within Psyr_4068 at 4852.279 kb on + strand, within Psyr_4068 at 4852.302 kb on + strand at 4852.303 kb on - strand at 4852.326 kb on + strand at 4852.327 kb on - strand at 4852.397 kb on + strand at 4852.397 kb on + strand at 4852.397 kb on + strand at 4852.398 kb on - strand at 4852.398 kb on - strand at 4852.453 kb on - strand at 4852.549 kb on + strand at 4852.550 kb on - strand at 4852.650 kb on + strand at 4852.650 kb on + strand at 4852.650 kb on + strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.807 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.923 kb on - strand, within Psyr_4069 at 4852.923 kb on - strand, within Psyr_4069 at 4853.182 kb on - strand, within Psyr_4069 at 4853.208 kb on + strand, within Psyr_4069 at 4853.208 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 4,850,709 + +0.5 4,850,713 + +1.0 4,850,713 + -2.2 4,850,713 + -1.1 4,850,714 - +0.4 4,850,714 - -1.3 4,850,714 - +1.5 4,850,714 - +0.4 4,850,766 + Psyr_4066 0.15 -0.7 4,850,766 + Psyr_4066 0.15 +0.6 4,850,766 + Psyr_4066 0.15 -2.8 4,850,766 + Psyr_4066 0.15 +1.0 4,850,766 + +0.6 4,850,766 + Psyr_4066 0.15 -0.9 4,850,766 + Psyr_4066 0.15 -1.2 4,850,766 + Psyr_4066 0.15 -0.7 4,850,767 - Psyr_4066 0.15 +0.2 4,850,767 - Psyr_4066 0.15 -0.1 4,850,767 - Psyr_4066 0.15 +0.0 4,850,929 + Psyr_4066 0.86 -2.1 4,850,952 - -1.8 4,850,977 - +1.6 4,850,977 - +0.1 4,851,005 + -0.8 4,851,005 + +3.6 4,851,063 + Psyr_4067 0.15 +0.5 4,851,185 + Psyr_4067 0.32 -1.1 4,851,185 + Psyr_4067 0.32 -0.6 4,851,185 + Psyr_4067 0.32 -1.4 4,851,185 + Psyr_4067 0.32 +0.6 4,851,185 + Psyr_4067 0.32 -1.9 4,851,185 + Psyr_4067 0.32 -1.4 4,851,185 + Psyr_4067 0.32 -1.6 4,851,185 + Psyr_4067 0.32 +0.1 4,851,185 + Psyr_4067 0.32 -0.0 4,851,185 + Psyr_4067 0.32 -1.9 4,851,185 + Psyr_4067 0.32 -1.7 4,851,186 - Psyr_4067 0.32 -1.2 4,851,186 - Psyr_4067 0.32 -0.4 4,851,186 - Psyr_4067 0.32 -2.9 4,851,186 - Psyr_4067 0.32 +0.6 4,851,260 + Psyr_4067 0.42 -0.8 4,851,260 + Psyr_4067 0.42 -2.5 4,851,260 + Psyr_4067 0.42 -0.4 4,851,261 - Psyr_4067 0.42 -1.7 4,851,261 - Psyr_4067 0.42 -0.3 4,851,261 - Psyr_4067 0.42 -0.9 4,851,261 - Psyr_4067 0.42 +0.5 4,851,454 + Psyr_4067 0.69 -0.9 4,851,455 - Psyr_4067 0.69 -1.3 4,851,455 - Psyr_4067 0.69 -0.4 4,851,492 - Psyr_4067 0.74 -1.2 4,851,492 - Psyr_4067 0.74 -0.5 4,851,495 + Psyr_4067 0.75 -0.7 4,851,495 + Psyr_4067 0.75 -0.6 4,851,495 + Psyr_4067 0.75 +0.6 4,851,495 + Psyr_4067 0.75 +1.3 4,851,496 - Psyr_4067 0.75 -0.2 4,851,496 - Psyr_4067 0.75 +0.7 4,851,496 - Psyr_4067 0.75 -1.4 4,851,496 - Psyr_4067 0.75 -2.0 4,851,496 - Psyr_4067 0.75 -3.2 4,851,496 - Psyr_4067 0.75 -2.7 4,851,518 + Psyr_4067 0.78 +0.1 4,851,518 + Psyr_4067 0.78 -0.7 4,851,684 + -1.4 4,851,691 + -0.7 4,851,691 + -1.2 4,851,691 + -1.2 4,851,691 + -0.6 4,851,691 + -0.6 4,851,691 + +0.1 4,851,692 - -0.3 4,851,692 - +1.7 4,851,692 - -0.4 4,851,692 - -0.0 4,851,696 - +0.5 4,851,696 - +0.9 4,851,702 + +0.9 4,851,702 + -1.6 4,851,702 + +0.1 4,851,702 + +0.1 4,851,702 + -1.7 4,851,702 + +1.8 4,851,702 + -2.7 4,851,702 + -1.7 4,851,702 + -2.4 4,851,702 + +1.4 4,851,702 + -0.3 4,851,702 + -0.6 4,851,702 + +0.1 4,851,703 - +0.6 4,851,703 - -0.0 4,851,703 - +1.6 4,851,703 - +0.5 4,851,703 - -1.8 4,851,703 - -1.0 4,851,703 - -0.1 4,851,703 - -2.1 4,851,703 - +0.1 4,851,703 - +1.6 4,851,703 - -0.6 4,851,703 - -1.6 4,851,703 - -0.0 4,851,720 + -1.9 4,851,720 + -1.7 4,851,720 + +0.4 4,851,721 - +1.1 4,851,721 - +0.9 4,851,721 - -1.9 4,851,721 - +0.9 4,851,721 - +1.4 4,851,816 + Psyr_4068 0.20 -0.6 4,851,944 + Psyr_4068 0.38 -0.8 4,851,945 - Psyr_4068 0.38 -2.0 4,852,008 - Psyr_4068 0.48 -2.1 4,852,058 + Psyr_4068 0.55 +1.6 4,852,068 - Psyr_4068 0.57 -0.0 4,852,121 - Psyr_4068 0.64 +0.3 4,852,279 + Psyr_4068 0.88 -1.8 4,852,302 + -0.2 4,852,303 - -3.4 4,852,326 + +0.3 4,852,327 - +0.1 4,852,397 + +1.4 4,852,397 + -1.3 4,852,397 + +1.6 4,852,398 - +1.0 4,852,398 - +1.7 4,852,453 - -0.4 4,852,549 + +0.0 4,852,550 - -0.6 4,852,650 + -1.4 4,852,650 + +0.3 4,852,650 + -0.6 4,852,651 - -0.6 4,852,651 - -0.1 4,852,651 - -0.9 4,852,651 - -0.5 4,852,807 + Psyr_4069 0.19 -0.5 4,852,922 + Psyr_4069 0.28 -0.7 4,852,922 + Psyr_4069 0.28 +0.8 4,852,922 + Psyr_4069 0.28 -0.9 4,852,923 - Psyr_4069 0.28 -1.4 4,852,923 - Psyr_4069 0.28 -0.2 4,853,182 - Psyr_4069 0.48 +0.7 4,853,208 + Psyr_4069 0.50 +0.3 4,853,208 + Psyr_4069 0.50 -1.6 4,853,214 + Psyr_4069 0.50 -3.1 4,853,214 + Psyr_4069 0.50 -1.7 4,853,214 + Psyr_4069 0.50 -0.9 4,853,214 + Psyr_4069 0.50 -0.4 4,853,214 + Psyr_4069 0.50 +0.4 4,853,214 + Psyr_4069 0.50 -1.7 4,853,214 + Psyr_4069 0.50 +1.1 4,853,214 + Psyr_4069 0.50 +0.4 4,853,214 + Psyr_4069 0.50 -1.2 4,853,214 + Psyr_4069 0.50 -2.4 4,853,215 - Psyr_4069 0.50 -0.4 4,853,215 - Psyr_4069 0.50 -0.4 4,853,215 - Psyr_4069 0.50 -3.4 4,853,215 - Psyr_4069 0.50 -2.0 4,853,215 - Psyr_4069 0.50 -1.5 4,853,215 - Psyr_4069 0.50 -1.0 4,853,215 - Psyr_4069 0.50 -2.2 4,853,215 - Psyr_4069 0.50 -0.9 4,853,215 - Psyr_4069 0.50 +0.4 4,853,215 - Psyr_4069 0.50 +1.1 4,853,215 - Psyr_4069 0.50 -1.9 4,853,215 - Psyr_4069 0.50 -3.2
Or see this region's nucleotide sequence