Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4007

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
4,770,085	+				-1.1
4,770,085	+				+0.1
4,770,085	+				+1.2
4,770,085	+				-2.4
4,770,085	+				+0.3
4,770,085	+				-1.6
4,770,085	+				+1.7
4,770,085	+				+0.5
4,770,085	+				-0.3
4,770,085	+				+2.6
4,770,085	+				+1.3
4,770,085	+				-1.0
4,770,085	+				+3.1
4,770,086	-				+0.3
4,770,086	-				+0.2
4,770,086	-				+0.4
4,770,086	-				+0.5
4,770,086	-				+1.4
4,770,086	-				-0.5
4,770,086	-				+1.4
4,770,086	-				+1.1
4,770,086	-				+1.6
4,770,086	-				-1.4
4,770,086	-				-1.2
4,770,086	-				-2.5
4,770,086	-				+0.7
4,770,087	+				-1.4
4,770,087	+				-0.0
4,770,087	+				-0.6
4,770,087	+				+0.3
4,770,087	+				+2.4
4,770,088	-				+0.6
4,770,088	-				-1.2
4,770,088	-				-0.4
4,770,088	-				+0.8
4,770,088	-				-0.1
4,770,191	+				-0.4
4,770,301	+		Psyr_4006	0.20	+1.7
4,770,301	+		Psyr_4006	0.20	-1.1
4,770,302	-		Psyr_4006	0.20	+0.2
4,770,302	-		Psyr_4006	0.20	+0.5
4,770,302	-		Psyr_4006	0.20	+1.5
4,770,302	-		Psyr_4006	0.20	+0.9
4,770,302	-		Psyr_4006	0.20	+0.7
4,770,302	-		Psyr_4006	0.20	-2.7
4,770,319	+		Psyr_4006	0.23	-0.1
4,770,319	+		Psyr_4006	0.23	-2.9
4,770,423	+		Psyr_4006	0.39	-2.3
4,770,424	-		Psyr_4006	0.39	+0.3
4,770,424	-		Psyr_4006	0.39	+0.5
4,770,424	-		Psyr_4006	0.39	+0.1
4,770,424	-		Psyr_4006	0.39	+1.8
4,770,665	+		Psyr_4006	0.75	-1.7
4,770,682	+		Psyr_4006	0.78	-1.1
4,770,682	+		Psyr_4006	0.78	-2.1
4,770,682	+		Psyr_4006	0.78	+2.7
4,770,683	-		Psyr_4006	0.78	+0.5
4,770,683	-		Psyr_4006	0.78	+2.7
4,770,683	-		Psyr_4006	0.78	+1.1
4,770,683	-		Psyr_4006	0.78	-2.0
4,770,754	+		Psyr_4006	0.89	+1.5
4,770,833	+				-1.3
4,770,834	-				-1.2
4,770,834	-				-1.0
4,770,834	-				-2.9
4,770,834	-				+2.2
4,770,885	+				+1.1
4,770,942	-				-3.1
4,771,008	+				+1.2
4,771,009	-				+0.7
4,771,009	-				-0.4
4,771,009	-				-1.0
4,771,009	-				-0.5
4,771,009	-				-2.1
4,771,013	-				+2.3
4,771,045	+				+0.1
4,771,045	+				-1.5
4,771,045	+				-1.3
4,771,046	-				+1.0
4,771,103	+				-1.8
4,771,196	-				+1.0
4,771,196	-				-0.5
4,771,205	+		Psyr_4007	0.11	+0.1
4,771,224	+		Psyr_4007	0.12	-1.9
4,771,224	+		Psyr_4007	0.12	+1.0
4,771,224	+		Psyr_4007	0.12	+0.3
4,771,224	+		Psyr_4007	0.12	-1.7
4,771,225	-		Psyr_4007	0.12	-3.9
4,771,225	-		Psyr_4007	0.12	-2.2
4,771,225	-		Psyr_4007	0.12	-1.0
4,771,377	+		Psyr_4007	0.25	-1.1
4,771,377	+		Psyr_4007	0.25	-1.3
4,771,378	-		Psyr_4007	0.25	-1.9
4,771,378	-				-0.5
4,771,440	+		Psyr_4007	0.31	-0.8
4,771,440	+		Psyr_4007	0.31	-1.8
4,771,441	-		Psyr_4007	0.31	+0.1
4,771,551	+		Psyr_4007	0.40	-3.9
4,771,571	+		Psyr_4007	0.42	-1.1
4,771,571	+		Psyr_4007	0.42	-1.1
4,771,571	+		Psyr_4007	0.42	-0.3
4,771,571	+		Psyr_4007	0.42	-1.2
4,771,571	+		Psyr_4007	0.42	-0.9
4,771,572	-		Psyr_4007	0.42	-0.9
4,771,572	-		Psyr_4007	0.42	-0.2
4,771,671	+		Psyr_4007	0.51	-2.1
4,771,671	+		Psyr_4007	0.51	+1.3
4,771,671	+		Psyr_4007	0.51	+0.2
4,771,671	+		Psyr_4007	0.51	-0.6
4,771,671	+		Psyr_4007	0.51	-0.1
4,771,671	+		Psyr_4007	0.51	-1.2
4,771,671	+		Psyr_4007	0.51	-1.9
4,771,671	+		Psyr_4007	0.51	-0.1
4,771,671	+		Psyr_4007	0.51	-3.0
4,771,671	+		Psyr_4007	0.51	+0.5
4,771,671	+		Psyr_4007	0.51	-0.2
4,771,671	+		Psyr_4007	0.51	-2.2
4,771,671	+		Psyr_4007	0.51	-1.3
4,771,671	+		Psyr_4007	0.51	-2.7
4,771,672	-		Psyr_4007	0.51	-1.2
4,771,672	-		Psyr_4007	0.51	+0.7
4,771,672	-		Psyr_4007	0.51	-1.2
4,771,672	-		Psyr_4007	0.51	-0.3
4,771,672	-		Psyr_4007	0.51	-1.6
4,771,672	-		Psyr_4007	0.51	-1.2
4,771,797	+		Psyr_4007	0.61	-0.3
4,771,831	+		Psyr_4007	0.64	-1.2
4,771,832	-		Psyr_4007	0.65	-0.2
4,772,042	+		Psyr_4007	0.83	-3.0
4,772,042	+		Psyr_4007	0.83	-0.0
4,772,043	-		Psyr_4007	0.83	-3.0
4,772,133	+				+3.4
4,772,133	+				-1.0
4,772,134	-				-0.2
4,772,134	-				-1.9
4,772,134	-				-0.5
4,772,134	-				-3.1
4,772,217	-				-1.5
4,772,349	+				-1.9
4,772,391	+				-2.3
4,772,392	-				-0.7
4,772,475	+				-0.2
4,772,475	+				-1.1
4,772,476	-				-2.3
4,772,493	-				+0.4
4,772,493	-				-2.6
4,772,715	+		Psyr_4008	0.15	-0.5
4,772,715	+		Psyr_4008	0.15	-1.4
4,772,715	+		Psyr_4008	0.15	-2.3
4,772,715	+		Psyr_4008	0.15	-1.2
4,772,715	+		Psyr_4008	0.15	+2.9
4,772,715	+		Psyr_4008	0.15	+0.4
4,772,715	+		Psyr_4008	0.15	+0.6
4,772,715	+		Psyr_4008	0.15	+1.8
4,772,715	+		Psyr_4008	0.15	+0.3
4,772,715	+		Psyr_4008	0.15	-1.0
4,772,715	+		Psyr_4008	0.15	+1.7
4,772,715	+		Psyr_4008	0.15	+1.5
4,772,715	+		Psyr_4008	0.15	-2.2
4,772,715	+		Psyr_4008	0.15	-0.9
4,772,715	+		Psyr_4008	0.15	-2.2
4,772,715	+		Psyr_4008	0.15	-1.9
4,772,715	+		Psyr_4008	0.15	-0.6
4,772,715	+		Psyr_4008	0.15	-0.3
4,772,716	-		Psyr_4008	0.15	+0.7
4,772,716	-		Psyr_4008	0.15	+0.1
4,772,716	-		Psyr_4008	0.15	-2.6
4,772,716	-		Psyr_4008	0.15	-0.8
4,772,716	-		Psyr_4008	0.15	-1.9
4,772,716	-		Psyr_4008	0.15	-0.5
4,772,716	-		Psyr_4008	0.15	+0.5
4,772,716	-		Psyr_4008	0.15	-0.6
4,772,716	-		Psyr_4008	0.15	+0.1
4,772,716	-		Psyr_4008	0.15	-0.9
4,772,716	-		Psyr_4008	0.15	-0.9
4,772,791	-		Psyr_4008	0.17	+0.4
4,772,801	+		Psyr_4008	0.18	-3.4
4,772,802	-		Psyr_4008	0.18	-0.6
4,772,802	-		Psyr_4008	0.18	-0.3
4,772,802	-		Psyr_4008	0.18	+0.3
4,772,802	-		Psyr_4008	0.18	-1.6
4,772,802	-		Psyr_4008	0.18	+0.9
4,772,802	-		Psyr_4008	0.18	+0.6
4,773,045	-		Psyr_4008	0.25	-1.9
4,773,069	+		Psyr_4008	0.26	-0.8
4,773,069	+		Psyr_4008	0.26	+4.3