Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2432

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
2,813,554	+		Psyr_2431	0.52	-0.9
2,813,554	+		Psyr_2431	0.52	+0.4
2,813,554	+		Psyr_2431	0.52	+0.3
2,813,554	+		Psyr_2431	0.52	+0.5
2,813,555	-		Psyr_2431	0.52	+0.7
2,813,555	-		Psyr_2431	0.52	-0.5
2,813,555	-		Psyr_2431	0.52	+1.0
2,813,555	-		Psyr_2431	0.52	-1.7
2,813,564	+		Psyr_2431	0.53	+1.1
2,813,564	+		Psyr_2431	0.53	+0.1
2,813,565	-		Psyr_2431	0.53	+0.6
2,813,685	+		Psyr_2431	0.64	-1.1
2,813,698	+		Psyr_2431	0.65	-0.7
2,813,698	+		Psyr_2431	0.65	+2.4
2,813,698	+		Psyr_2431	0.65	-0.3
2,813,698	+		Psyr_2431	0.65	+2.6
2,813,698	+		Psyr_2431	0.65	-3.0
2,813,698	+		Psyr_2431	0.65	+1.0
2,813,699	-		Psyr_2431	0.65	-2.3
2,813,699	-		Psyr_2431	0.65	-0.8
2,813,699	-		Psyr_2431	0.65	-0.6
2,813,725	+		Psyr_2431	0.67	-1.0
2,813,726	-		Psyr_2431	0.67	+0.1
2,813,726	-		Psyr_2431	0.67	-0.6
2,813,876	-		Psyr_2431	0.81	-1.0
2,813,876	-		Psyr_2431	0.81	-0.7
2,813,876	-		Psyr_2431	0.81	+0.6
2,813,906	+		Psyr_2431	0.83	+0.3
2,813,906	+		Psyr_2431	0.83	-0.3
2,813,906	+				-1.6
2,813,907	-		Psyr_2431	0.83	-0.6
2,814,025	+				+0.7
2,814,025	+				+1.1
2,814,031	+				+0.7
2,814,031	+				-0.3
2,814,031	+				-0.5
2,814,032	-				+1.1
2,814,032	-				+3.3
2,814,032	-				-1.6
2,814,032	-				-0.1
2,814,045	+				+3.5
2,814,069	-				-1.1
2,814,069	-				-0.4
2,814,075	-				+0.3
2,814,162	-				+0.7
2,814,217	-				-0.3
2,814,249	+				+0.3
2,814,250	-				-0.7
2,814,250	-				-1.2
2,814,269	-				+0.5
2,814,269	-				-1.7
2,814,269	-				-1.8
2,814,349	-				+0.6
2,814,476	+				-1.9
2,814,477	-				-0.7
2,814,541	+				+2.0
2,814,542	-				+1.7
2,814,542	-				+1.4
2,814,566	+				+1.0
2,814,566	+				+1.8
2,814,567	-				+0.7
2,814,567	-				-1.9
2,814,770	-		Psyr_2432	0.16	-0.2
2,814,772	+		Psyr_2432	0.17	-1.0
2,814,773	-		Psyr_2432	0.17	+0.1
2,814,846	-		Psyr_2432	0.19	-1.3
2,814,846	-		Psyr_2432	0.19	-0.3
2,814,846	-		Psyr_2432	0.19	+0.5
2,814,846	-		Psyr_2432	0.19	+1.3
2,814,846	-		Psyr_2432	0.19	-0.7
2,814,846	-		Psyr_2432	0.19	+0.9
2,814,846	-		Psyr_2432	0.19	+0.2
2,814,846	-		Psyr_2432	0.19	-0.5
2,814,858	-		Psyr_2432	0.20	+0.1
2,814,858	-		Psyr_2432	0.20	-1.3
2,814,884	+		Psyr_2432	0.20	-1.3
2,814,885	-		Psyr_2432	0.20	+0.7
2,814,890	+		Psyr_2432	0.21	-2.3
2,814,893	+		Psyr_2432	0.21	+0.3
2,814,893	+		Psyr_2432	0.21	-0.0
2,814,893	+		Psyr_2432	0.21	+0.3
2,814,894	-		Psyr_2432	0.21	-2.4
2,814,894	-		Psyr_2432	0.21	+0.7
2,814,894	-		Psyr_2432	0.21	-0.5
2,814,894	-		Psyr_2432	0.21	-0.2
2,814,894	-		Psyr_2432	0.21	-1.8
2,815,050	-		Psyr_2432	0.26	-1.7
2,815,065	+		Psyr_2432	0.27	-0.5
2,815,066	-		Psyr_2432	0.27	-1.1
2,815,140	-		Psyr_2432	0.29	+1.0
2,815,146	+		Psyr_2432	0.29	+1.1
2,815,146	+		Psyr_2432	0.29	+1.9
2,815,146	+		Psyr_2432	0.29	-1.6
2,815,147	-		Psyr_2432	0.29	-0.9
2,815,147	-				-0.9
2,815,147	-		Psyr_2432	0.29	+2.2
2,815,147	-		Psyr_2432	0.29	-0.4
2,815,147	-		Psyr_2432	0.29	+1.5
2,815,147	-		Psyr_2432	0.29	-0.1
2,815,147	-		Psyr_2432	0.29	+2.3
2,815,147	-		Psyr_2432	0.29	-2.3
2,815,157	+		Psyr_2432	0.30	-0.1
2,815,158	-		Psyr_2432	0.30	+0.5
2,815,158	-		Psyr_2432	0.30	+0.7
2,815,448	+		Psyr_2432	0.40	+0.5
2,815,448	+		Psyr_2432	0.40	-0.6
2,815,460	+		Psyr_2432	0.40	+1.2
2,815,496	+		Psyr_2432	0.41	+0.3
2,815,496	+		Psyr_2432	0.41	+2.4
2,815,496	+		Psyr_2432	0.41	+0.1
2,815,496	+		Psyr_2432	0.41	+0.7
2,815,496	+		Psyr_2432	0.41	+2.5
2,815,496	+		Psyr_2432	0.41	-0.7
2,815,497	-		Psyr_2432	0.41	-1.3
2,815,497	-		Psyr_2432	0.41	+1.4
2,815,497	-		Psyr_2432	0.41	-0.3
2,815,497	-		Psyr_2432	0.41	-1.0
2,815,559	+		Psyr_2432	0.44	-2.4
2,815,559	+		Psyr_2432	0.44	+2.5
2,815,560	-		Psyr_2432	0.44	+0.8
2,815,560	-		Psyr_2432	0.44	-0.3
2,815,567	-		Psyr_2432	0.44	-1.7
2,815,595	+		Psyr_2432	0.45	-0.2
2,815,596	-		Psyr_2432	0.45	-0.4
2,815,638	+		Psyr_2432	0.46	+3.0
2,815,638	+		Psyr_2432	0.46	+1.0
2,815,728	-		Psyr_2432	0.49	-0.3
2,815,745	+		Psyr_2432	0.50	+1.5
2,815,745	+		Psyr_2432	0.50	-0.6
2,815,746	-		Psyr_2432	0.50	+0.9
2,815,746	-		Psyr_2432	0.50	+0.4
2,815,746	-		Psyr_2432	0.50	+1.4
2,815,746	-		Psyr_2432	0.50	+0.3
2,815,746	-		Psyr_2432	0.50	+0.0
2,815,747	+		Psyr_2432	0.50	+1.5
2,815,747	+		Psyr_2432	0.50	-0.3
2,815,747	+		Psyr_2432	0.50	-0.3
2,815,747	+		Psyr_2432	0.50	-0.0
2,815,747	+		Psyr_2432	0.50	-2.6
2,815,747	+		Psyr_2432	0.50	+0.5
2,815,747	+		Psyr_2432	0.50	-0.9
2,815,747	+		Psyr_2432	0.50	+0.7
2,815,748	-		Psyr_2432	0.50	-2.9
2,815,748	-		Psyr_2432	0.50	-0.1
2,815,748	-		Psyr_2432	0.50	+1.3
2,815,748	-		Psyr_2432	0.50	-1.9
2,815,748	-		Psyr_2432	0.50	-1.1
2,816,224	-		Psyr_2432	0.66	+0.3
2,816,284	+		Psyr_2432	0.69	+2.0
2,816,285	-		Psyr_2432	0.69	-3.0
2,816,360	+		Psyr_2432	0.71	-2.2
2,816,473	+		Psyr_2432	0.75	-0.9
2,816,474	-		Psyr_2432	0.75	+1.9
2,816,474	-		Psyr_2432	0.75	-1.3
2,816,642	+		Psyr_2432	0.81	-0.0
2,816,642	+		Psyr_2432	0.81	+0.6
2,816,642	+		Psyr_2432	0.81	-0.0
2,816,642	+		Psyr_2432	0.81	+0.9
2,816,642	+		Psyr_2432	0.81	-0.4
2,816,643	-		Psyr_2432	0.81	-0.7
2,816,643	-		Psyr_2432	0.81	+1.2
2,816,643	-		Psyr_2432	0.81	+1.0
2,816,643	-		Psyr_2432	0.81	-0.6
2,816,643	-		Psyr_2432	0.81	-0.4
2,816,723	+		Psyr_2432	0.84	-0.0
2,816,723	+		Psyr_2432	0.84	-1.2
2,816,758	-		Psyr_2432	0.85	+0.2
2,816,758	-		Psyr_2432	0.85	-0.1
2,816,758	-		Psyr_2432	0.85	-0.4
2,816,930	+				-2.3
2,817,137	+				+0.4
2,817,137	+				+0.1
2,817,137	+				+0.5
2,817,137	+				+1.4
2,817,138	-				+2.3
2,817,138	-				+0.1
2,817,373	+				+0.8
2,817,373	+				+1.9
2,817,374	-				+0.3
2,817,557	+		Psyr_2433	0.34	-3.4
2,817,557	+		Psyr_2433	0.34	+0.1
2,817,558	-		Psyr_2433	0.34	-0.4
2,817,558	-		Psyr_2433	0.34	+0.1
2,817,607	+		Psyr_2433	0.43	-0.9
2,817,608	-		Psyr_2433	0.43	-0.9
2,817,705	+		Psyr_2433	0.61	-0.5
2,817,788	+		Psyr_2433	0.76	-1.7
2,817,789	-		Psyr_2433	0.76	-1.3
2,817,789	-		Psyr_2433	0.76	-1.0
2,817,789	-		Psyr_2433	0.76	+0.9
2,817,789	-		Psyr_2433	0.76	-1.6
2,817,985	+				-0.3
2,818,184	-				-1.3