Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0730 and Psyr_0731 overlap by 4 nucleotides Psyr_0731 and Psyr_0732 are separated by 60 nucleotides Psyr_0732 and Psyr_0733 overlap by 8 nucleotides Psyr_0733 and Psyr_0734 are separated by 430 nucleotides
Psyr_0730: Psyr_0730 - CDS, at 837,051 to 837,347
_0730
Psyr_0731: Psyr_0731 - CDS, at 837,344 to 838,102
_0731
Psyr_0732: Psyr_0732 - CDS, at 838,163 to 838,300
_0732
Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249
_0733
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 837.593 kb on + strand, within Psyr_0731 at 837.593 kb on + strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 838.003 kb on + strand, within Psyr_0731 at 838.037 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.294 kb on + strand at 838.295 kb on - strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.360 kb on - strand at 838.360 kb on - strand at 838.360 kb on - strand at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.597 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.726 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.763 kb on - strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.964 kb on - strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.249 kb on + strand at 839.249 kb on + strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.293 kb on - strand at 839.293 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.339 kb on + strand at 839.339 kb on + strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.347 kb on + strand at 839.348 kb on - strand at 839.348 kb on - strand at 839.433 kb on - strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.444 kb on - strand at 839.486 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.542 kb on - strand at 839.599 kb on + strand at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 837,593 + Psyr_0731 0.33 +0.8 837,593 + Psyr_0731 0.33 -0.1 837,594 - Psyr_0731 0.33 -1.4 837,594 - Psyr_0731 0.33 -1.3 837,594 - Psyr_0731 0.33 -1.0 837,594 - Psyr_0731 0.33 -2.4 837,594 - Psyr_0731 0.33 +2.4 837,594 - Psyr_0731 0.33 -0.1 837,594 - Psyr_0731 0.33 +1.7 837,627 - Psyr_0731 0.37 +1.9 837,627 - Psyr_0731 0.37 -0.7 837,627 - Psyr_0731 0.37 +0.6 838,003 + Psyr_0731 0.87 +0.4 838,037 - -1.5 838,135 - +3.2 838,135 - +1.9 838,135 - +0.4 838,135 - +1.2 838,135 - +0.6 838,135 - -0.3 838,135 - +0.2 838,135 - -0.5 838,135 - +1.5 838,135 - +0.2 838,135 - -0.2 838,294 + +2.0 838,295 - -1.4 838,343 + +1.9 838,343 + -3.5 838,343 + +0.2 838,343 + -1.7 838,343 + +0.9 838,344 - +0.1 838,344 - +0.2 838,344 - -0.7 838,344 - -0.8 838,344 - +0.3 838,344 - +1.0 838,344 - +0.6 838,344 - -1.8 838,360 - -0.2 838,360 - +0.3 838,360 - +0.8 838,508 + Psyr_0733 0.22 +1.5 838,508 + Psyr_0733 0.22 +0.6 838,508 + Psyr_0733 0.22 +0.2 838,508 + Psyr_0733 0.22 -1.4 838,508 + Psyr_0733 0.22 +0.6 838,508 + Psyr_0733 0.22 -0.8 838,509 - Psyr_0733 0.23 -0.4 838,509 - Psyr_0733 0.23 -0.6 838,509 - Psyr_0733 0.23 +0.7 838,509 - Psyr_0733 0.23 +0.5 838,509 - Psyr_0733 0.23 +0.9 838,509 - Psyr_0733 0.23 -1.1 838,597 + Psyr_0733 0.32 -0.3 838,689 + Psyr_0733 0.41 -0.1 838,689 + Psyr_0733 0.41 +1.5 838,690 - Psyr_0733 0.41 +0.2 838,690 - Psyr_0733 0.41 -0.3 838,690 - Psyr_0733 0.41 -0.4 838,690 - Psyr_0733 0.41 -1.1 838,690 - Psyr_0733 0.41 +0.2 838,690 - Psyr_0733 0.41 +1.3 838,690 - Psyr_0733 0.41 -0.4 838,699 + Psyr_0733 0.42 -1.3 838,699 + Psyr_0733 0.42 +0.9 838,699 + +1.8 838,699 + Psyr_0733 0.42 +0.6 838,699 + Psyr_0733 0.42 -1.6 838,699 + Psyr_0733 0.42 +2.1 838,700 - Psyr_0733 0.43 -1.9 838,700 - Psyr_0733 0.43 +1.0 838,700 - Psyr_0733 0.43 -0.4 838,700 - Psyr_0733 0.43 +0.6 838,726 - Psyr_0733 0.45 +1.2 838,751 - Psyr_0733 0.48 +0.4 838,751 - Psyr_0733 0.48 +1.0 838,751 - Psyr_0733 0.48 +2.3 838,763 - Psyr_0733 0.49 +2.1 838,830 + Psyr_0733 0.56 +0.5 838,830 + Psyr_0733 0.56 -2.5 838,939 + Psyr_0733 0.68 +1.2 838,939 + Psyr_0733 0.68 +3.1 838,940 - Psyr_0733 0.68 +0.7 838,940 - Psyr_0733 0.68 +1.9 838,940 - Psyr_0733 0.68 -0.6 838,940 - Psyr_0733 0.68 -0.3 838,964 - Psyr_0733 0.70 -0.3 839,005 + Psyr_0733 0.74 +0.7 839,005 + Psyr_0733 0.74 -2.2 839,005 + Psyr_0733 0.74 +0.5 839,005 + Psyr_0733 0.74 +1.1 839,006 - Psyr_0733 0.75 -0.4 839,006 - Psyr_0733 0.75 +0.1 839,077 + Psyr_0733 0.82 +0.5 839,077 + Psyr_0733 0.82 -0.4 839,077 + Psyr_0733 0.82 +0.6 839,077 + Psyr_0733 0.82 -0.7 839,077 + Psyr_0733 0.82 +0.2 839,077 + Psyr_0733 0.82 +0.4 839,077 + Psyr_0733 0.82 -0.1 839,077 + Psyr_0733 0.82 -0.1 839,249 + +0.9 839,249 + -0.1 839,250 - -0.1 839,250 - -0.4 839,250 - -3.5 839,250 - +0.1 839,250 - +1.0 839,250 - -2.5 839,252 - +1.6 839,252 - -1.0 839,252 - +0.3 839,252 - -0.4 839,252 - -1.6 839,252 - -1.4 839,252 - -1.1 839,252 - +3.2 839,252 - +0.1 839,252 - -0.1 839,252 - +2.0 839,252 - +0.3 839,252 - +0.0 839,252 - -0.6 839,252 - -0.2 839,291 - +1.3 839,291 - -0.3 839,291 - +0.1 839,291 - -2.0 839,291 - -1.7 839,291 - +0.4 839,291 - -0.0 839,291 - -0.0 839,291 - -2.8 839,291 - -1.0 839,293 - +0.9 839,293 - +0.5 839,319 + -1.3 839,319 + +2.0 839,319 + -0.5 839,319 + -1.1 839,319 + -0.5 839,319 + +1.0 839,319 + -0.3 839,319 + +0.2 839,319 + -0.6 839,319 + +1.1 839,319 + -0.2 839,319 + +0.6 839,319 + -0.4 839,339 + +0.1 839,339 + +4.1 839,340 - +0.9 839,340 - -0.9 839,340 - +0.3 839,341 + -1.8 839,341 + -1.1 839,341 + -0.4 839,341 + -1.0 839,341 + +2.8 839,341 + +0.9 839,341 + +1.9 839,341 + -0.4 839,341 + +0.5 839,342 - -0.9 839,342 - +1.5 839,342 - -0.2 839,342 - +1.7 839,347 + +2.4 839,348 - +0.2 839,348 - +0.6 839,433 - -0.4 839,439 + +1.5 839,439 + -1.0 839,439 + -0.1 839,439 + +0.5 839,444 - +0.8 839,486 + +1.1 839,541 + +0.2 839,541 + -0.7 839,541 + -2.0 839,542 - +0.5 839,599 + +1.1 839,992 - Psyr_0734 0.70 -1.8 839,997 + Psyr_0734 0.71 -1.3 839,998 - Psyr_0734 0.72 +1.2 840,012 - Psyr_0734 0.75 -0.4 840,012 - Psyr_0734 0.75 +1.4 840,012 - Psyr_0734 0.75 -0.7 840,012 - Psyr_0734 0.75 -1.5 840,012 - Psyr_0734 0.75 +0.6
Or see this region's nucleotide sequence