Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0649 and Psyr_0650 are separated by 244 nucleotides Psyr_0650 and Psyr_0651 are separated by 606 nucleotides Psyr_0651 and Psyr_0652 are separated by 59 nucleotides
Psyr_0649: Psyr_0649 - transcriptional regulator, AraC family, at 737,097 to 737,900
_0649
Psyr_0650: Psyr_0650 - Protein of unknown function RIO1, at 738,145 to 739,041
_0650
Psyr_0651: Psyr_0651 - Helix-turn-helix, Fis-type, at 739,648 to 739,947
_0651
Psyr_0652: Psyr_0652 - Integrase, catalytic region, at 740,007 to 740,789
_0652
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.898 kb on + strand at 737.898 kb on + strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.935 kb on - strand at 737.935 kb on - strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.974 kb on + strand at 737.975 kb on - strand at 738.009 kb on + strand at 738.094 kb on - strand at 738.136 kb on + strand at 738.156 kb on + strand at 738.157 kb on - strand at 738.238 kb on + strand, within Psyr_0650 at 738.238 kb on + strand, within Psyr_0650 at 738.238 kb on + strand, within Psyr_0650 at 738.238 kb on + strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.280 kb on + strand, within Psyr_0650 at 738.280 kb on + strand, within Psyr_0650 at 738.280 kb on + strand, within Psyr_0650 at 738.281 kb on - strand, within Psyr_0650 at 738.515 kb on + strand, within Psyr_0650 at 738.515 kb on + strand, within Psyr_0650 at 738.526 kb on + strand, within Psyr_0650 at 738.778 kb on + strand, within Psyr_0650 at 738.778 kb on + strand, within Psyr_0650 at 738.779 kb on - strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.923 kb on + strand, within Psyr_0650 at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.251 kb on + strand at 739.251 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.318 kb on + strand at 739.318 kb on + strand at 739.319 kb on - strand at 739.319 kb on - strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.390 kb on - strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.533 kb on + strand at 739.533 kb on + strand at 739.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 737,181 + Psyr_0649 0.10 -0.6 737,181 + Psyr_0649 0.10 +0.8 737,181 + Psyr_0649 0.10 -1.4 737,181 + Psyr_0649 0.10 -1.1 737,181 + Psyr_0649 0.10 +1.1 737,182 - Psyr_0649 0.11 +1.2 737,182 - Psyr_0649 0.11 -0.3 737,182 - Psyr_0649 0.11 -2.2 737,388 + Psyr_0649 0.36 -0.3 737,388 + Psyr_0649 0.36 -0.5 737,388 + Psyr_0649 0.36 -3.0 737,388 + Psyr_0649 0.36 +1.5 737,388 + Psyr_0649 0.36 +0.9 737,388 + Psyr_0649 0.36 -0.8 737,389 - Psyr_0649 0.36 -0.1 737,389 - Psyr_0649 0.36 -1.6 737,389 - Psyr_0649 0.36 +0.2 737,389 - Psyr_0649 0.36 +0.1 737,389 - Psyr_0649 0.36 -2.8 737,389 - Psyr_0649 0.36 +0.2 737,389 - Psyr_0649 0.36 -0.7 737,389 - Psyr_0649 0.36 -1.8 737,389 - Psyr_0649 0.36 -3.7 737,898 + -0.4 737,898 + -1.3 737,899 - -0.8 737,899 - +1.8 737,899 - +1.7 737,899 - +1.8 737,899 - +1.1 737,899 - +2.5 737,934 + +0.0 737,934 + -0.8 737,934 + +0.1 737,934 + -1.2 737,934 + +2.2 737,935 - +0.7 737,935 - -0.9 737,955 + -1.6 737,955 + -0.8 737,955 + -0.0 737,955 + +1.0 737,956 - +0.8 737,956 - -0.4 737,956 - +0.8 737,956 - +1.2 737,974 + +1.0 737,975 - -0.5 738,009 + +0.3 738,094 - +0.1 738,136 + +0.4 738,156 + +0.0 738,157 - -2.5 738,238 + Psyr_0650 0.10 -0.1 738,238 + Psyr_0650 0.10 -0.2 738,238 + Psyr_0650 0.10 +1.2 738,238 + Psyr_0650 0.10 -1.0 738,239 - Psyr_0650 0.10 -0.4 738,239 - Psyr_0650 0.10 -0.8 738,239 - Psyr_0650 0.10 -0.1 738,239 - Psyr_0650 0.10 -3.1 738,239 - Psyr_0650 0.10 -1.6 738,239 - Psyr_0650 0.10 +0.2 738,239 - Psyr_0650 0.10 +1.6 738,280 + Psyr_0650 0.15 -2.7 738,280 + Psyr_0650 0.15 +0.9 738,280 + Psyr_0650 0.15 -0.8 738,281 - Psyr_0650 0.15 +1.5 738,515 + Psyr_0650 0.41 +1.4 738,515 + Psyr_0650 0.41 -1.4 738,526 + Psyr_0650 0.42 -0.9 738,778 + Psyr_0650 0.71 -0.0 738,778 + Psyr_0650 0.71 -0.4 738,779 - Psyr_0650 0.71 +1.4 738,817 + Psyr_0650 0.75 +0.9 738,817 + Psyr_0650 0.75 -2.1 738,817 + Psyr_0650 0.75 -1.0 738,818 - Psyr_0650 0.75 -0.0 738,818 - Psyr_0650 0.75 -0.6 738,818 - Psyr_0650 0.75 -0.0 738,838 + Psyr_0650 0.77 -0.5 738,838 + Psyr_0650 0.77 +0.7 738,838 + Psyr_0650 0.77 +3.0 738,839 - Psyr_0650 0.77 +0.8 738,839 - Psyr_0650 0.77 +0.8 738,839 - Psyr_0650 0.77 -0.4 738,839 - Psyr_0650 0.77 -0.3 738,841 + Psyr_0650 0.78 +0.5 738,841 + Psyr_0650 0.78 -0.2 738,842 - Psyr_0650 0.78 +0.3 738,842 - Psyr_0650 0.78 +2.2 738,842 - Psyr_0650 0.78 +0.7 738,923 + Psyr_0650 0.87 +1.2 739,151 + +1.6 739,151 + -0.7 739,151 + +0.4 739,151 + +0.4 739,151 + +1.5 739,151 + +2.4 739,251 + +0.1 739,251 + -0.3 739,291 + -0.1 739,291 + -0.8 739,291 + -0.8 739,291 + +1.7 739,292 - -0.4 739,292 - -2.2 739,292 - +0.7 739,292 - +1.8 739,292 - +1.0 739,318 + -1.2 739,318 + -1.8 739,319 - +0.2 739,319 - +0.4 739,389 + +0.6 739,389 + +2.2 739,389 + +1.7 739,390 - -0.8 739,393 + +0.7 739,393 + +1.4 739,393 + -1.3 739,533 + +0.1 739,533 + -1.8 739,590 - +0.8
Or see this region's nucleotide sequence