Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0569 and Psyr_0570 overlap by 1 nucleotides Psyr_0570 and Psyr_0571 are separated by 0 nucleotides
Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607
_0569
Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553
_0570
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Position (kb) 647
648
649
650 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.500 kb on + strand at 647.500 kb on + strand at 647.500 kb on + strand at 647.501 kb on - strand at 647.501 kb on - strand at 647.501 kb on - strand at 647.578 kb on - strand at 647.894 kb on + strand, within Psyr_0570 at 648.106 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.427 kb on - strand, within Psyr_0570 at 648.427 kb on - strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.846 kb on + strand, within Psyr_0570 at 648.853 kb on - strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.534 kb on + strand at 649.534 kb on + strand at 649.565 kb on - strand at 649.622 kb on - strand at 649.774 kb on - strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.863 kb on - strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.062 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.218 kb on + strand, within Psyr_0571 at 650.428 kb on + strand at 650.432 kb on + strand at 650.432 kb on + strand at 650.536 kb on + strand at 650.536 kb on + strand at 650.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 647,404 + Psyr_0569 0.86 -1.1 647,404 + Psyr_0569 0.86 -1.4 647,404 + Psyr_0569 0.86 -0.9 647,404 + Psyr_0569 0.86 -1.8 647,404 + Psyr_0569 0.86 -2.6 647,404 + Psyr_0569 0.86 -3.9 647,404 + Psyr_0569 0.86 +1.6 647,404 + Psyr_0569 0.86 -2.4 647,404 + Psyr_0569 0.86 -1.6 647,404 + Psyr_0569 0.86 -0.9 647,405 - Psyr_0569 0.86 -2.5 647,405 - Psyr_0569 0.86 +0.2 647,405 - Psyr_0569 0.86 -1.8 647,405 - Psyr_0569 0.86 -0.0 647,405 - Psyr_0569 0.86 +1.2 647,405 - Psyr_0569 0.86 -1.6 647,405 - Psyr_0569 0.86 +0.2 647,405 - Psyr_0569 0.86 +1.2 647,405 - Psyr_0569 0.86 -0.4 647,405 - Psyr_0569 0.86 -0.4 647,405 - Psyr_0569 0.86 -0.7 647,500 + -1.5 647,500 + +0.6 647,500 + +0.2 647,501 - +1.5 647,501 - -1.6 647,501 - -1.4 647,578 - +0.2 647,894 + Psyr_0570 0.15 -0.9 648,106 + Psyr_0570 0.26 +1.2 648,426 + Psyr_0570 0.42 -2.7 648,426 + Psyr_0570 0.42 +2.5 648,426 + Psyr_0570 0.42 -1.6 648,426 + Psyr_0570 0.42 -1.1 648,427 - Psyr_0570 0.42 -1.4 648,427 - Psyr_0570 0.42 -2.1 648,628 + Psyr_0570 0.52 +0.3 648,628 + Psyr_0570 0.52 -1.1 648,628 + Psyr_0570 0.52 -1.6 648,628 + Psyr_0570 0.52 -2.6 648,628 + Psyr_0570 0.52 -0.2 648,628 + Psyr_0570 0.52 -1.5 648,628 + Psyr_0570 0.52 +0.4 648,628 + Psyr_0570 0.52 -0.4 648,628 + Psyr_0570 0.52 -2.0 648,628 + Psyr_0570 0.52 +1.8 648,628 + Psyr_0570 0.52 -0.5 648,628 + Psyr_0570 0.52 -0.8 648,628 + Psyr_0570 0.52 -0.4 648,629 - Psyr_0570 0.52 -0.7 648,629 - Psyr_0570 0.52 -1.4 648,629 - Psyr_0570 0.52 -2.1 648,629 - Psyr_0570 0.52 -0.3 648,629 - Psyr_0570 0.52 -1.6 648,629 - Psyr_0570 0.52 -0.8 648,629 - Psyr_0570 0.52 -2.9 648,629 - Psyr_0570 0.52 +0.3 648,629 - Psyr_0570 0.52 +0.3 648,629 - Psyr_0570 0.52 +0.3 648,630 + Psyr_0570 0.53 +0.2 648,630 + Psyr_0570 0.53 +1.2 648,630 + Psyr_0570 0.53 +0.6 648,630 + Psyr_0570 0.53 -2.6 648,846 + Psyr_0570 0.64 -0.0 648,853 - Psyr_0570 0.64 +2.2 649,007 + Psyr_0570 0.72 -0.7 649,007 + Psyr_0570 0.72 +0.4 649,007 + Psyr_0570 0.72 -1.8 649,008 - Psyr_0570 0.72 -1.4 649,008 - Psyr_0570 0.72 -0.5 649,011 + Psyr_0570 0.72 +1.5 649,011 + Psyr_0570 0.72 -0.8 649,011 + Psyr_0570 0.72 +0.3 649,011 + Psyr_0570 0.72 +0.3 649,011 + Psyr_0570 0.72 +0.6 649,011 + Psyr_0570 0.72 -0.8 649,011 + Psyr_0570 0.72 -0.5 649,011 + Psyr_0570 0.72 -0.2 649,012 - Psyr_0570 0.72 -0.8 649,012 - Psyr_0570 0.72 +0.2 649,012 - Psyr_0570 0.72 -1.6 649,080 + Psyr_0570 0.76 +0.5 649,080 + Psyr_0570 0.76 +0.2 649,080 + Psyr_0570 0.76 +0.1 649,080 + Psyr_0570 0.76 +1.0 649,080 + Psyr_0570 0.76 -1.1 649,080 + Psyr_0570 0.76 -2.4 649,080 + Psyr_0570 0.76 +0.2 649,080 + Psyr_0570 0.76 -0.4 649,080 + Psyr_0570 0.76 +1.2 649,081 - Psyr_0570 0.76 -1.8 649,081 - Psyr_0570 0.76 -1.8 649,081 - Psyr_0570 0.76 -0.5 649,081 - Psyr_0570 0.76 -1.7 649,081 - Psyr_0570 0.76 -0.6 649,096 + Psyr_0570 0.76 -1.1 649,096 + Psyr_0570 0.76 -0.4 649,534 + -1.8 649,534 + +0.5 649,565 - +1.1 649,622 - +1.2 649,774 - Psyr_0571 0.23 -0.8 649,839 - Psyr_0571 0.29 -0.8 649,862 + Psyr_0571 0.32 +2.7 649,862 + Psyr_0571 0.32 +0.8 649,862 + Psyr_0571 0.32 +1.2 649,863 - Psyr_0571 0.32 -2.5 650,015 + Psyr_0571 0.47 +0.7 650,016 - Psyr_0571 0.48 +1.2 650,016 - Psyr_0571 0.48 -1.8 650,016 - Psyr_0571 0.48 -0.6 650,016 - Psyr_0571 0.48 -2.0 650,062 - Psyr_0571 0.52 +0.6 650,154 + Psyr_0571 0.62 -1.4 650,155 - Psyr_0571 0.62 +1.7 650,218 + Psyr_0571 0.68 +2.2 650,428 + +2.4 650,432 + +0.2 650,432 + +0.6 650,536 + -1.6 650,536 + -1.9 650,544 + +1.1
Or see this region's nucleotide sequence