Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0417

Experiment: apoplastic; Green bean; 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0415 and Psyr_0416 are separated by 3 nucleotidesPsyr_0416 and Psyr_0417 are separated by 0 nucleotidesPsyr_0417 and Psyr_0418 are separated by 269 nucleotidesPsyr_0418 and Psyr_0419 overlap by 4 nucleotides Psyr_0415: Psyr_0415 - N-acyl-D-amino-acid deacylase, at 453,090 to 454,565 _0415 Psyr_0416: Psyr_0416 - transcriptional regulator, RpiR family, at 454,569 to 455,429 _0416 Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779 _0417 Psyr_0418: Psyr_0418 - conserved domain protein, at 457,049 to 457,696 _0418 Psyr_0419: Psyr_0419 - conserved hypothetical protein, at 457,693 to 458,958 _0419 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 454.558 kb on + strandat 454.558 kb on + strandat 454.559 kb on - strandat 454.606 kb on + strandat 454.606 kb on + strandat 454.607 kb on - strandat 454.607 kb on - strandat 454.731 kb on - strand, within Psyr_0416at 454.731 kb on - strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.831 kb on + strand, within Psyr_0416at 454.832 kb on - strand, within Psyr_0416at 454.832 kb on - strand, within Psyr_0416at 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.536 kb on + strandat 455.536 kb on + strandat 455.537 kb on - strandat 455.537 kb on - strandat 455.832 kb on + strand, within Psyr_0417at 455.833 kb on - strand, within Psyr_0417at 455.833 kb on - strand, within Psyr_0417at 455.833 kb on - strand, within Psyr_0417at 456.011 kb on + strand, within Psyr_0417at 456.012 kb on - strand, within Psyr_0417at 456.012 kb on - strand, within Psyr_0417at 456.181 kb on + strand, within Psyr_0417at 456.182 kb on - strand, within Psyr_0417at 456.182 kb on - strand, within Psyr_0417at 456.229 kb on + strand, within Psyr_0417at 456.229 kb on + strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.259 kb on + strand, within Psyr_0417at 456.473 kb on + strand, within Psyr_0417at 456.610 kb on + strand, within Psyr_0417at 456.610 kb on + strand, within Psyr_0417at 456.610 kb on + strand, within Psyr_0417at 456.610 kb on + strand, within Psyr_0417at 456.611 kb on - strand, within Psyr_0417at 456.611 kb on - strand, within Psyr_0417at 456.746 kb on - strandat 456.761 kb on + strandat 456.780 kb on - strandat 456.881 kb on + strandat 456.882 kb on - strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.924 kb on + strandat 456.931 kb on - strandat 457.078 kb on - strandat 457.105 kb on + strandat 457.105 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.111 kb on + strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.112 kb on - strandat 457.140 kb on - strand, within Psyr_0418at 457.140 kb on - strand, within Psyr_0418at 457.140 kb on - strand, within Psyr_0418at 457.230 kb on + strand, within Psyr_0418at 457.231 kb on - strand, within Psyr_0418at 457.389 kb on + strand, within Psyr_0418at 457.389 kb on + strand, within Psyr_0418at 457.390 kb on - strand, within Psyr_0418at 457.390 kb on - strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.476 kb on + strand, within Psyr_0418at 457.477 kb on - strand, within Psyr_0418at 457.523 kb on + strand, within Psyr_0418at 457.523 kb on + strand, within Psyr_0418at 457.524 kb on - strand, within Psyr_0418at 457.524 kb on - strand, within Psyr_0418at 457.539 kb on + strand, within Psyr_0418at 457.540 kb on - strand, within Psyr_0418at 457.614 kb on + strand, within Psyr_0418at 457.614 kb on + strand, within Psyr_0418at 457.615 kb on - strand, within Psyr_0418at 457.615 kb on - strand, within Psyr_0418at 457.750 kb on + strandat 457.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days
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454,558 + +0.4
454,558 + +0.8
454,559 - -0.0
454,606 + +1.0
454,606 + -0.4
454,607 - +0.3
454,607 - -1.0
454,731 - Psyr_0416 0.19 -0.2
454,731 - Psyr_0416 0.19 +0.5
454,732 + Psyr_0416 0.19 -2.6
454,732 + Psyr_0416 0.19 -0.3
454,732 + Psyr_0416 0.19 -2.5
454,732 + Psyr_0416 0.19 -0.1
454,732 + Psyr_0416 0.19 -0.5
454,732 + Psyr_0416 0.19 +1.0
454,732 + Psyr_0416 0.19 -0.2
454,732 + Psyr_0416 0.19 -0.9
454,732 + Psyr_0416 0.19 +0.3
454,732 + Psyr_0416 0.19 +0.5
454,732 + Psyr_0416 0.19 +2.9
454,733 - Psyr_0416 0.19 -1.6
454,733 - Psyr_0416 0.19 +0.6
454,733 - Psyr_0416 0.19 -2.0
454,733 - Psyr_0416 0.19 -0.6
454,733 - Psyr_0416 0.19 +1.9
454,733 - Psyr_0416 0.19 +1.2
454,733 - Psyr_0416 0.19 +0.3
454,733 - Psyr_0416 0.19 -0.6
454,733 - Psyr_0416 0.19 -0.1
454,831 + Psyr_0416 0.30 -0.5
454,832 - Psyr_0416 0.31 -1.6
454,832 - Psyr_0416 0.31 +1.6
455,409 + +0.7
455,409 + -0.0
455,409 + -0.5
455,409 + +2.0
455,409 + +1.0
455,409 + +1.3
455,409 + +0.3
455,409 + +1.3
455,409 + +2.0
455,410 - -0.3
455,410 - +0.2
455,410 - -0.9
455,536 + +1.3
455,536 + -0.8
455,537 - -0.3
455,537 - -1.9
455,832 + Psyr_0417 0.30 -1.4
455,833 - Psyr_0417 0.30 +0.2
455,833 - Psyr_0417 0.30 +0.6
455,833 - Psyr_0417 0.30 -0.3
456,011 + Psyr_0417 0.43 +1.1
456,012 - Psyr_0417 0.43 -0.2
456,012 - Psyr_0417 0.43 -2.6
456,181 + Psyr_0417 0.56 +0.7
456,182 - Psyr_0417 0.56 +0.7
456,182 - Psyr_0417 0.56 -0.7
456,229 + Psyr_0417 0.59 -0.1
456,229 + Psyr_0417 0.59 +1.1
456,230 - Psyr_0417 0.59 +0.9
456,230 - Psyr_0417 0.59 -0.2
456,230 - Psyr_0417 0.59 +0.0
456,259 + Psyr_0417 0.61 +2.4
456,473 + Psyr_0417 0.77 -2.4
456,610 + Psyr_0417 0.87 -1.5
456,610 + Psyr_0417 0.87 +0.6
456,610 + Psyr_0417 0.87 -1.5
456,610 + Psyr_0417 0.87 -0.9
456,611 - Psyr_0417 0.87 -0.9
456,611 - Psyr_0417 0.87 -0.3
456,746 - -2.3
456,761 + +0.1
456,780 - +0.2
456,881 + +0.6
456,882 - -1.0
456,924 + -2.3
456,924 + -1.9
456,924 + -0.7
456,924 + +0.1
456,931 - -1.7
457,078 - +1.1
457,105 + -1.7
457,105 + -1.7
457,111 + +0.3
457,111 + +2.3
457,111 + -2.2
457,111 + +2.0
457,111 + -1.3
457,111 + -0.0
457,111 + +1.3
457,112 - +1.7
457,112 - +1.2
457,112 - -0.1
457,112 - +0.4
457,112 - +1.8
457,112 - +0.2
457,140 - Psyr_0418 0.14 -0.4
457,140 - Psyr_0418 0.14 +1.2
457,140 - Psyr_0418 0.14 +0.5
457,230 + Psyr_0418 0.28 +0.0
457,231 - Psyr_0418 0.28 +1.8
457,389 + Psyr_0418 0.52 +3.0
457,389 + Psyr_0418 0.52 +0.3
457,390 - Psyr_0418 0.53 +0.6
457,390 - Psyr_0418 0.53 +0.9
457,476 + Psyr_0418 0.66 +0.2
457,476 + Psyr_0418 0.66 +1.7
457,476 + Psyr_0418 0.66 -2.8
457,477 - Psyr_0418 0.66 -0.5
457,523 + Psyr_0418 0.73 +1.3
457,523 + Psyr_0418 0.73 +0.6
457,524 - Psyr_0418 0.73 -0.3
457,524 - Psyr_0418 0.73 +1.9
457,539 + Psyr_0418 0.76 -0.0
457,540 - Psyr_0418 0.76 +0.4
457,614 + Psyr_0418 0.87 +1.5
457,614 + Psyr_0418 0.87 +0.7
457,615 - Psyr_0418 0.87 -0.4
457,615 - Psyr_0418 0.87 -1.5
457,750 + -0.0
457,751 - -0.4

Or see this region's nucleotide sequence