Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0415 and Psyr_0416 are separated by 3 nucleotides Psyr_0416 and Psyr_0417 are separated by 0 nucleotides
Psyr_0415: Psyr_0415 - N-acyl-D-amino-acid deacylase, at 453,090 to 454,565
_0415
Psyr_0416: Psyr_0416 - transcriptional regulator, RpiR family, at 454,569 to 455,429
_0416
Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779
_0417
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 453.588 kb on + strand, within Psyr_0415 at 453.653 kb on + strand, within Psyr_0415 at 453.653 kb on + strand, within Psyr_0415 at 453.654 kb on - strand, within Psyr_0415 at 453.725 kb on - strand, within Psyr_0415 at 453.731 kb on - strand, within Psyr_0415 at 453.864 kb on + strand, within Psyr_0415 at 453.864 kb on + strand, within Psyr_0415 at 453.864 kb on + strand, within Psyr_0415 at 453.865 kb on - strand, within Psyr_0415 at 453.928 kb on + strand, within Psyr_0415 at 453.928 kb on + strand, within Psyr_0415 at 453.928 kb on + strand, within Psyr_0415 at 453.929 kb on - strand, within Psyr_0415 at 453.929 kb on - strand, within Psyr_0415 at 453.929 kb on - strand, within Psyr_0415 at 453.929 kb on - strand, within Psyr_0415 at 454.003 kb on + strand, within Psyr_0415 at 454.210 kb on + strand, within Psyr_0415 at 454.210 kb on + strand, within Psyr_0415 at 454.210 kb on + strand, within Psyr_0415 at 454.210 kb on + strand, within Psyr_0415 at 454.558 kb on + strand at 454.558 kb on + strand at 454.559 kb on - strand at 454.606 kb on + strand at 454.606 kb on + strand at 454.607 kb on - strand at 454.607 kb on - strand at 454.731 kb on - strand, within Psyr_0416 at 454.731 kb on - strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.732 kb on + strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.733 kb on - strand, within Psyr_0416 at 454.831 kb on + strand, within Psyr_0416 at 454.832 kb on - strand, within Psyr_0416 at 454.832 kb on - strand, within Psyr_0416 at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.409 kb on + strand at 455.410 kb on - strand at 455.410 kb on - strand at 455.410 kb on - strand at 455.536 kb on + strand at 455.536 kb on + strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.832 kb on + strand, within Psyr_0417 at 455.833 kb on - strand, within Psyr_0417 at 455.833 kb on - strand, within Psyr_0417 at 455.833 kb on - strand, within Psyr_0417 at 456.011 kb on + strand, within Psyr_0417 at 456.012 kb on - strand, within Psyr_0417 at 456.012 kb on - strand, within Psyr_0417 at 456.181 kb on + strand, within Psyr_0417 at 456.182 kb on - strand, within Psyr_0417 at 456.182 kb on - strand, within Psyr_0417 at 456.229 kb on + strand, within Psyr_0417 at 456.229 kb on + strand, within Psyr_0417 at 456.230 kb on - strand, within Psyr_0417 at 456.230 kb on - strand, within Psyr_0417 at 456.230 kb on - strand, within Psyr_0417 at 456.259 kb on + strand, within Psyr_0417
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 453,588 + Psyr_0415 0.34 +2.2 453,653 + Psyr_0415 0.38 +0.1 453,653 + Psyr_0415 0.38 +0.7 453,654 - Psyr_0415 0.38 -0.2 453,725 - Psyr_0415 0.43 +1.5 453,731 - Psyr_0415 0.43 +0.3 453,864 + Psyr_0415 0.52 -1.0 453,864 + Psyr_0415 0.52 -0.5 453,864 + Psyr_0415 0.52 +0.0 453,865 - Psyr_0415 0.53 +0.9 453,928 + Psyr_0415 0.57 +1.1 453,928 + Psyr_0415 0.57 -0.2 453,928 + Psyr_0415 0.57 -0.6 453,929 - Psyr_0415 0.57 +0.6 453,929 - Psyr_0415 0.57 +2.2 453,929 - Psyr_0415 0.57 +2.1 453,929 - Psyr_0415 0.57 -0.0 454,003 + Psyr_0415 0.62 +1.4 454,210 + Psyr_0415 0.76 +2.7 454,210 + Psyr_0415 0.76 -1.1 454,210 + Psyr_0415 0.76 +0.7 454,210 + Psyr_0415 0.76 -1.2 454,558 + +0.4 454,558 + +0.8 454,559 - -0.0 454,606 + +1.0 454,606 + -0.4 454,607 - +0.3 454,607 - -1.0 454,731 - Psyr_0416 0.19 -0.2 454,731 - Psyr_0416 0.19 +0.5 454,732 + Psyr_0416 0.19 -2.6 454,732 + Psyr_0416 0.19 -0.3 454,732 + Psyr_0416 0.19 -2.5 454,732 + Psyr_0416 0.19 -0.1 454,732 + Psyr_0416 0.19 -0.5 454,732 + Psyr_0416 0.19 +1.0 454,732 + Psyr_0416 0.19 -0.2 454,732 + Psyr_0416 0.19 -0.9 454,732 + Psyr_0416 0.19 +0.3 454,732 + Psyr_0416 0.19 +0.5 454,732 + Psyr_0416 0.19 +2.9 454,733 - Psyr_0416 0.19 -1.6 454,733 - Psyr_0416 0.19 +0.6 454,733 - Psyr_0416 0.19 -2.0 454,733 - Psyr_0416 0.19 -0.6 454,733 - Psyr_0416 0.19 +1.9 454,733 - Psyr_0416 0.19 +1.2 454,733 - Psyr_0416 0.19 +0.3 454,733 - Psyr_0416 0.19 -0.6 454,733 - Psyr_0416 0.19 -0.1 454,831 + Psyr_0416 0.30 -0.5 454,832 - Psyr_0416 0.31 -1.6 454,832 - Psyr_0416 0.31 +1.6 455,409 + +0.7 455,409 + -0.0 455,409 + -0.5 455,409 + +2.0 455,409 + +1.0 455,409 + +1.3 455,409 + +0.3 455,409 + +1.3 455,409 + +2.0 455,410 - -0.3 455,410 - +0.2 455,410 - -0.9 455,536 + +1.3 455,536 + -0.8 455,537 - -0.3 455,537 - -1.9 455,832 + Psyr_0417 0.30 -1.4 455,833 - Psyr_0417 0.30 +0.2 455,833 - Psyr_0417 0.30 +0.6 455,833 - Psyr_0417 0.30 -0.3 456,011 + Psyr_0417 0.43 +1.1 456,012 - Psyr_0417 0.43 -0.2 456,012 - Psyr_0417 0.43 -2.6 456,181 + Psyr_0417 0.56 +0.7 456,182 - Psyr_0417 0.56 +0.7 456,182 - Psyr_0417 0.56 -0.7 456,229 + Psyr_0417 0.59 -0.1 456,229 + Psyr_0417 0.59 +1.1 456,230 - Psyr_0417 0.59 +0.9 456,230 - Psyr_0417 0.59 -0.2 456,230 - Psyr_0417 0.59 +0.0 456,259 + Psyr_0417 0.61 +2.4
Or see this region's nucleotide sequence