Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03520

Experiment: formate N-free with 10mM Ammonium chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03510 and MMP_RS03515 are separated by 85 nucleotidesMMP_RS03515 and MMP_RS03520 are separated by 9 nucleotidesMMP_RS03520 and MMP_RS03525 are separated by 102 nucleotides MMP_RS03510: MMP_RS03510 - 30S ribosomal protein S3ae, at 658,446 to 659,123 _RS03510 MMP_RS03515: MMP_RS03515 - DMT family transporter, at 659,209 to 660,099 _RS03515 MMP_RS03520: MMP_RS03520 - YwbE family protein, at 660,109 to 660,303 _RS03520 MMP_RS03525: MMP_RS03525 - ketopantoate reductase family protein, at 660,406 to 661,326 _RS03525 Position (kb) 660 661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 659.277 kb on + strandat 659.301 kb on - strand, within MMP_RS03515at 659.302 kb on + strand, within MMP_RS03515at 659.366 kb on - strand, within MMP_RS03515at 659.404 kb on - strand, within MMP_RS03515at 659.405 kb on + strand, within MMP_RS03515at 659.405 kb on + strand, within MMP_RS03515at 659.433 kb on - strand, within MMP_RS03515at 659.440 kb on - strand, within MMP_RS03515at 659.443 kb on - strand, within MMP_RS03515at 659.444 kb on + strand, within MMP_RS03515at 659.447 kb on - strand, within MMP_RS03515at 659.465 kb on - strand, within MMP_RS03515at 659.466 kb on + strand, within MMP_RS03515at 659.470 kb on - strand, within MMP_RS03515at 659.495 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.660 kb on - strand, within MMP_RS03515at 659.661 kb on + strand, within MMP_RS03515at 659.695 kb on - strand, within MMP_RS03515at 659.743 kb on + strand, within MMP_RS03515at 659.751 kb on - strand, within MMP_RS03515at 659.751 kb on - strand, within MMP_RS03515at 659.778 kb on - strand, within MMP_RS03515at 659.781 kb on + strand, within MMP_RS03515at 659.897 kb on + strand, within MMP_RS03515at 659.956 kb on - strand, within MMP_RS03515at 659.959 kb on + strand, within MMP_RS03515at 659.959 kb on + strand, within MMP_RS03515at 660.015 kb on - strandat 660.027 kb on + strandat 660.058 kb on - strandat 660.098 kb on + strandat 660.153 kb on + strand, within MMP_RS03520at 660.159 kb on + strand, within MMP_RS03520at 660.301 kb on - strandat 660.301 kb on - strandat 660.332 kb on + strandat 660.350 kb on - strandat 660.366 kb on - strandat 660.562 kb on - strand, within MMP_RS03525at 660.562 kb on - strand, within MMP_RS03525at 660.563 kb on + strand, within MMP_RS03525at 660.564 kb on - strand, within MMP_RS03525at 660.612 kb on - strand, within MMP_RS03525at 660.616 kb on + strand, within MMP_RS03525at 660.618 kb on + strand, within MMP_RS03525at 660.735 kb on - strand, within MMP_RS03525at 660.735 kb on - strand, within MMP_RS03525at 660.762 kb on - strand, within MMP_RS03525at 660.762 kb on - strand, within MMP_RS03525at 660.797 kb on - strand, within MMP_RS03525at 660.863 kb on - strand, within MMP_RS03525at 660.875 kb on - strand, within MMP_RS03525at 660.922 kb on + strand, within MMP_RS03525at 660.952 kb on - strand, within MMP_RS03525at 660.953 kb on + strand, within MMP_RS03525at 660.966 kb on + strand, within MMP_RS03525at 660.985 kb on + strand, within MMP_RS03525at 661.042 kb on + strand, within MMP_RS03525at 661.046 kb on - strand, within MMP_RS03525at 661.049 kb on + strand, within MMP_RS03525at 661.056 kb on + strand, within MMP_RS03525at 661.089 kb on + strand, within MMP_RS03525at 661.194 kb on - strand, within MMP_RS03525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
remove
659,277 + -0.2
659,301 - MMP_RS03515 0.10 -0.5
659,302 + MMP_RS03515 0.10 +0.2
659,366 - MMP_RS03515 0.18 -0.1
659,404 - MMP_RS03515 0.22 +1.0
659,405 + MMP_RS03515 0.22 +0.4
659,405 + MMP_RS03515 0.22 +0.2
659,433 - MMP_RS03515 0.25 +0.1
659,440 - MMP_RS03515 0.26 -0.7
659,443 - MMP_RS03515 0.26 +0.3
659,444 + MMP_RS03515 0.26 -0.1
659,447 - MMP_RS03515 0.27 -0.1
659,465 - MMP_RS03515 0.29 -0.3
659,466 + MMP_RS03515 0.29 -0.2
659,470 - MMP_RS03515 0.29 +0.2
659,495 - MMP_RS03515 0.32 -1.1
659,660 - MMP_RS03515 0.51 -0.2
659,660 - MMP_RS03515 0.51 -0.0
659,660 - MMP_RS03515 0.51 +0.2
659,660 - MMP_RS03515 0.51 +0.1
659,660 - MMP_RS03515 0.51 +0.2
659,661 + MMP_RS03515 0.51 -0.5
659,695 - MMP_RS03515 0.55 -0.4
659,743 + MMP_RS03515 0.60 +0.7
659,751 - MMP_RS03515 0.61 -0.5
659,751 - MMP_RS03515 0.61 -0.1
659,778 - MMP_RS03515 0.64 -0.6
659,781 + MMP_RS03515 0.64 +0.4
659,897 + MMP_RS03515 0.77 -0.2
659,956 - MMP_RS03515 0.84 -1.2
659,959 + MMP_RS03515 0.84 +0.1
659,959 + MMP_RS03515 0.84 +0.5
660,015 - +0.0
660,027 + -0.0
660,058 - -0.1
660,098 + -0.2
660,153 + MMP_RS03520 0.23 +0.4
660,159 + MMP_RS03520 0.26 -2.0
660,301 - +0.5
660,301 - -1.7
660,332 + -0.1
660,350 - -1.2
660,366 - -0.3
660,562 - MMP_RS03525 0.17 -0.8
660,562 - MMP_RS03525 0.17 +1.0
660,563 + MMP_RS03525 0.17 +0.1
660,564 - MMP_RS03525 0.17 +0.3
660,612 - MMP_RS03525 0.22 -3.8
660,616 + MMP_RS03525 0.23 -0.4
660,618 + MMP_RS03525 0.23 -0.4
660,735 - MMP_RS03525 0.36 -0.1
660,735 - MMP_RS03525 0.36 -0.3
660,762 - MMP_RS03525 0.39 -0.7
660,762 - MMP_RS03525 0.39 -0.1
660,797 - MMP_RS03525 0.42 -1.0
660,863 - MMP_RS03525 0.50 -1.1
660,875 - MMP_RS03525 0.51 +0.1
660,922 + MMP_RS03525 0.56 -0.3
660,952 - MMP_RS03525 0.59 +0.3
660,953 + MMP_RS03525 0.59 -0.2
660,966 + MMP_RS03525 0.61 -0.6
660,985 + MMP_RS03525 0.63 +0.1
661,042 + MMP_RS03525 0.69 +0.7
661,046 - MMP_RS03525 0.69 +0.8
661,049 + MMP_RS03525 0.70 -0.1
661,056 + MMP_RS03525 0.71 -0.2
661,089 + MMP_RS03525 0.74 +0.6
661,194 - MMP_RS03525 0.86 -1.1

Or see this region's nucleotide sequence