Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24150

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24145 and AO356_24150 are separated by 25 nucleotidesAO356_24150 and AO356_24155 are separated by 125 nucleotides AO356_24145: AO356_24145 - hypothetical protein, at 5,414,912 to 5,415,940 _24145 AO356_24150: AO356_24150 - hypothetical protein, at 5,415,966 to 5,416,412 _24150 AO356_24155: AO356_24155 - LysR family transcriptional regulator, at 5,416,538 to 5,417,431 _24155 Position (kb) 5415 5416 5417Strain fitness (log2 ratio) -2 -1 0 1 2at 5414.977 kb on - strandat 5414.977 kb on - strandat 5415.039 kb on + strand, within AO356_24145at 5415.039 kb on + strand, within AO356_24145at 5415.040 kb on - strand, within AO356_24145at 5415.040 kb on - strand, within AO356_24145at 5415.166 kb on + strand, within AO356_24145at 5415.166 kb on + strand, within AO356_24145at 5415.167 kb on - strand, within AO356_24145at 5415.228 kb on + strand, within AO356_24145at 5415.237 kb on + strand, within AO356_24145at 5415.237 kb on + strand, within AO356_24145at 5415.237 kb on + strand, within AO356_24145at 5415.238 kb on - strand, within AO356_24145at 5415.238 kb on - strand, within AO356_24145at 5415.253 kb on + strand, within AO356_24145at 5415.253 kb on + strand, within AO356_24145at 5415.254 kb on - strand, within AO356_24145at 5415.262 kb on + strand, within AO356_24145at 5415.262 kb on + strand, within AO356_24145at 5415.262 kb on + strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.286 kb on + strand, within AO356_24145at 5415.297 kb on + strand, within AO356_24145at 5415.297 kb on + strand, within AO356_24145at 5415.328 kb on + strand, within AO356_24145at 5415.328 kb on + strand, within AO356_24145at 5415.328 kb on + strand, within AO356_24145at 5415.329 kb on - strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.425 kb on - strand, within AO356_24145at 5415.425 kb on - strand, within AO356_24145at 5415.425 kb on - strand, within AO356_24145at 5415.499 kb on + strand, within AO356_24145at 5415.500 kb on - strand, within AO356_24145at 5415.500 kb on - strand, within AO356_24145at 5415.579 kb on + strand, within AO356_24145at 5415.579 kb on + strand, within AO356_24145at 5415.579 kb on + strand, within AO356_24145at 5415.579 kb on + strand, within AO356_24145at 5415.579 kb on + strand, within AO356_24145at 5415.579 kb on + strand, within AO356_24145at 5415.580 kb on - strand, within AO356_24145at 5415.580 kb on - strand, within AO356_24145at 5415.580 kb on - strand, within AO356_24145at 5415.580 kb on - strand, within AO356_24145at 5415.580 kb on - strand, within AO356_24145at 5415.583 kb on + strand, within AO356_24145at 5415.684 kb on + strand, within AO356_24145at 5415.685 kb on - strand, within AO356_24145at 5415.685 kb on - strand, within AO356_24145at 5415.685 kb on - strand, within AO356_24145at 5415.804 kb on + strand, within AO356_24145at 5415.831 kb on - strand, within AO356_24145at 5415.851 kb on - strandat 5415.853 kb on - strandat 5415.860 kb on - strandat 5415.878 kb on - strandat 5415.878 kb on - strandat 5415.920 kb on + strandat 5415.921 kb on - strandat 5415.921 kb on - strandat 5415.963 kb on + strandat 5416.054 kb on + strand, within AO356_24150at 5416.054 kb on + strand, within AO356_24150at 5416.054 kb on + strand, within AO356_24150at 5416.061 kb on - strand, within AO356_24150at 5416.079 kb on + strand, within AO356_24150at 5416.082 kb on - strand, within AO356_24150at 5416.109 kb on - strand, within AO356_24150at 5416.183 kb on + strand, within AO356_24150at 5416.183 kb on + strand, within AO356_24150at 5416.184 kb on - strand, within AO356_24150at 5416.184 kb on - strand, within AO356_24150at 5416.184 kb on - strand, within AO356_24150at 5416.184 kb on - strand, within AO356_24150at 5416.307 kb on + strand, within AO356_24150at 5416.308 kb on - strand, within AO356_24150at 5416.308 kb on - strand, within AO356_24150at 5416.360 kb on + strand, within AO356_24150at 5416.361 kb on - strand, within AO356_24150at 5416.361 kb on - strand, within AO356_24150at 5416.361 kb on - strand, within AO356_24150at 5416.361 kb on - strand, within AO356_24150at 5416.427 kb on + strandat 5416.427 kb on + strandat 5416.439 kb on + strandat 5416.440 kb on - strandat 5416.440 kb on - strandat 5416.440 kb on - strandat 5416.466 kb on + strandat 5416.478 kb on + strandat 5416.499 kb on - strandat 5416.500 kb on + strandat 5416.500 kb on + strandat 5416.770 kb on + strand, within AO356_24155at 5416.824 kb on + strand, within AO356_24155at 5416.824 kb on + strand, within AO356_24155at 5416.824 kb on + strand, within AO356_24155at 5416.824 kb on + strand, within AO356_24155at 5416.824 kb on + strand, within AO356_24155at 5416.825 kb on - strand, within AO356_24155at 5416.825 kb on - strand, within AO356_24155at 5416.825 kb on - strand, within AO356_24155at 5416.825 kb on - strand, within AO356_24155at 5416.888 kb on - strand, within AO356_24155at 5416.896 kb on - strand, within AO356_24155at 5417.057 kb on + strand, within AO356_24155at 5417.058 kb on - strand, within AO356_24155at 5417.058 kb on - strand, within AO356_24155at 5417.058 kb on - strand, within AO356_24155at 5417.058 kb on - strand, within AO356_24155at 5417.125 kb on + strand, within AO356_24155at 5417.125 kb on + strand, within AO356_24155at 5417.126 kb on - strand, within AO356_24155at 5417.126 kb on - strand, within AO356_24155at 5417.147 kb on + strand, within AO356_24155at 5417.148 kb on - strand, within AO356_24155at 5417.148 kb on - strand, within AO356_24155at 5417.148 kb on - strand, within AO356_24155at 5417.193 kb on + strand, within AO356_24155at 5417.264 kb on + strand, within AO356_24155at 5417.265 kb on - strand, within AO356_24155at 5417.265 kb on - strand, within AO356_24155at 5417.354 kb on + strandat 5417.360 kb on + strandat 5417.360 kb on + strandat 5417.361 kb on - strandat 5417.361 kb on - strandat 5417.363 kb on + strandat 5417.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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5,414,977 - +0.0
5,414,977 - -0.9
5,415,039 + AO356_24145 0.12 +0.1
5,415,039 + AO356_24145 0.12 +0.0
5,415,040 - AO356_24145 0.12 +0.9
5,415,040 - AO356_24145 0.12 +1.6
5,415,166 + AO356_24145 0.25 +0.5
5,415,166 + AO356_24145 0.25 -1.0
5,415,167 - AO356_24145 0.25 -0.9
5,415,228 + AO356_24145 0.31 -0.2
5,415,237 + AO356_24145 0.32 +0.5
5,415,237 + AO356_24145 0.32 -0.3
5,415,237 + AO356_24145 0.32 -1.2
5,415,238 - AO356_24145 0.32 -0.4
5,415,238 - AO356_24145 0.32 +0.4
5,415,253 + AO356_24145 0.33 +1.7
5,415,253 + AO356_24145 0.33 -0.1
5,415,254 - AO356_24145 0.33 +0.5
5,415,262 + AO356_24145 0.34 -2.1
5,415,262 + AO356_24145 0.34 -0.6
5,415,262 + AO356_24145 0.34 +1.2
5,415,263 - AO356_24145 0.34 -0.9
5,415,263 - AO356_24145 0.34 +1.8
5,415,263 - AO356_24145 0.34 -0.5
5,415,263 - AO356_24145 0.34 +0.1
5,415,263 - AO356_24145 0.34 +0.4
5,415,286 + AO356_24145 0.36 +0.4
5,415,297 + AO356_24145 0.37 +0.5
5,415,297 + AO356_24145 0.37 +0.1
5,415,328 + AO356_24145 0.40 +0.2
5,415,328 + AO356_24145 0.40 -0.6
5,415,328 + AO356_24145 0.40 -0.5
5,415,329 - AO356_24145 0.41 +0.3
5,415,420 + AO356_24145 0.49 +0.1
5,415,420 + AO356_24145 0.49 +0.9
5,415,420 + AO356_24145 0.49 +0.7
5,415,420 + AO356_24145 0.49 +0.4
5,415,420 + AO356_24145 0.49 +1.0
5,415,420 + AO356_24145 0.49 +1.1
5,415,420 + AO356_24145 0.49 -0.3
5,415,420 + AO356_24145 0.49 +0.6
5,415,420 + AO356_24145 0.49 -0.2
5,415,421 - AO356_24145 0.49 +0.4
5,415,421 - AO356_24145 0.49 -1.3
5,415,421 - AO356_24145 0.49 +0.5
5,415,421 - AO356_24145 0.49 -0.1
5,415,421 - AO356_24145 0.49 +0.7
5,415,421 - AO356_24145 0.49 +0.1
5,415,421 - AO356_24145 0.49 -0.1
5,415,421 - AO356_24145 0.49 +0.4
5,415,421 - AO356_24145 0.49 -1.0
5,415,421 - AO356_24145 0.49 +0.6
5,415,421 - AO356_24145 0.49 +1.2
5,415,424 + AO356_24145 0.50 +0.3
5,415,424 + AO356_24145 0.50 +0.7
5,415,424 + AO356_24145 0.50 +1.8
5,415,424 + AO356_24145 0.50 +0.5
5,415,424 + AO356_24145 0.50 +1.1
5,415,424 + AO356_24145 0.50 +0.5
5,415,424 + AO356_24145 0.50 -0.1
5,415,425 - AO356_24145 0.50 +1.5
5,415,425 - AO356_24145 0.50 +0.4
5,415,425 - AO356_24145 0.50 +0.4
5,415,499 + AO356_24145 0.57 -0.4
5,415,500 - AO356_24145 0.57 -0.4
5,415,500 - AO356_24145 0.57 -0.7
5,415,579 + AO356_24145 0.65 +1.3
5,415,579 + AO356_24145 0.65 -0.0
5,415,579 + AO356_24145 0.65 +0.9
5,415,579 + AO356_24145 0.65 -0.0
5,415,579 + AO356_24145 0.65 -0.6
5,415,579 + AO356_24145 0.65 +2.4
5,415,580 - AO356_24145 0.65 -1.2
5,415,580 - AO356_24145 0.65 -1.1
5,415,580 - AO356_24145 0.65 -0.5
5,415,580 - AO356_24145 0.65 +0.8
5,415,580 - AO356_24145 0.65 +0.4
5,415,583 + AO356_24145 0.65 +1.6
5,415,684 + AO356_24145 0.75 +0.1
5,415,685 - AO356_24145 0.75 +0.6
5,415,685 - AO356_24145 0.75 -0.0
5,415,685 - AO356_24145 0.75 +0.4
5,415,804 + AO356_24145 0.87 -1.0
5,415,831 - AO356_24145 0.89 +0.7
5,415,851 - +0.6
5,415,853 - +0.3
5,415,860 - -0.6
5,415,878 - -1.0
5,415,878 - +0.8
5,415,920 + -0.6
5,415,921 - +1.0
5,415,921 - -1.2
5,415,963 + +0.2
5,416,054 + AO356_24150 0.20 +0.7
5,416,054 + AO356_24150 0.20 -0.2
5,416,054 + AO356_24150 0.20 +0.3
5,416,061 - AO356_24150 0.21 +0.6
5,416,079 + AO356_24150 0.25 +0.9
5,416,082 - AO356_24150 0.26 +0.5
5,416,109 - AO356_24150 0.32 -0.8
5,416,183 + AO356_24150 0.49 -0.1
5,416,183 + AO356_24150 0.49 +0.0
5,416,184 - AO356_24150 0.49 -0.7
5,416,184 - AO356_24150 0.49 +0.9
5,416,184 - AO356_24150 0.49 +0.2
5,416,184 - AO356_24150 0.49 -2.6
5,416,307 + AO356_24150 0.76 +0.0
5,416,308 - AO356_24150 0.77 -0.8
5,416,308 - AO356_24150 0.77 -0.2
5,416,360 + AO356_24150 0.88 +0.0
5,416,361 - AO356_24150 0.88 -1.0
5,416,361 - AO356_24150 0.88 -0.3
5,416,361 - AO356_24150 0.88 -0.4
5,416,361 - AO356_24150 0.88 -0.8
5,416,427 + -0.4
5,416,427 + -0.8
5,416,439 + -1.1
5,416,440 - +0.4
5,416,440 - -1.0
5,416,440 - -0.5
5,416,466 + -0.3
5,416,478 + +0.5
5,416,499 - -1.8
5,416,500 + +1.4
5,416,500 + -1.5
5,416,770 + AO356_24155 0.26 +0.4
5,416,824 + AO356_24155 0.32 -0.6
5,416,824 + AO356_24155 0.32 -1.1
5,416,824 + AO356_24155 0.32 -0.4
5,416,824 + AO356_24155 0.32 +0.7
5,416,824 + AO356_24155 0.32 +0.5
5,416,825 - AO356_24155 0.32 -2.0
5,416,825 - AO356_24155 0.32 +0.4
5,416,825 - AO356_24155 0.32 -0.7
5,416,825 - AO356_24155 0.32 +0.8
5,416,888 - AO356_24155 0.39 -0.3
5,416,896 - AO356_24155 0.40 +0.7
5,417,057 + AO356_24155 0.58 -1.2
5,417,058 - AO356_24155 0.58 +0.4
5,417,058 - AO356_24155 0.58 -0.2
5,417,058 - AO356_24155 0.58 +0.1
5,417,058 - AO356_24155 0.58 +0.1
5,417,125 + AO356_24155 0.66 +0.2
5,417,125 + AO356_24155 0.66 +1.0
5,417,126 - AO356_24155 0.66 -1.0
5,417,126 - AO356_24155 0.66 +0.4
5,417,147 + AO356_24155 0.68 +0.5
5,417,148 - AO356_24155 0.68 -0.0
5,417,148 - AO356_24155 0.68 -0.1
5,417,148 - AO356_24155 0.68 +0.9
5,417,193 + AO356_24155 0.73 +0.5
5,417,264 + AO356_24155 0.81 -0.8
5,417,265 - AO356_24155 0.81 -0.6
5,417,265 - AO356_24155 0.81 -0.1
5,417,354 + +0.3
5,417,360 + -0.3
5,417,360 + -0.5
5,417,361 - +0.7
5,417,361 - -0.8
5,417,363 + +0.2
5,417,364 - -0.1

Or see this region's nucleotide sequence