Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22295

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22290 and AO356_22295 overlap by 4 nucleotidesAO356_22295 and AO356_22300 are separated by 196 nucleotides AO356_22290: AO356_22290 - oxidoreductase, at 4,985,088 to 4,986,263 _22290 AO356_22295: AO356_22295 - AP endonuclease, at 4,986,260 to 4,987,339 _22295 AO356_22300: AO356_22300 - MFS transporter, at 4,987,536 to 4,988,768 _22300 Position (kb) 4986 4987 4988Strain fitness (log2 ratio) -2 -1 0 1at 4985.493 kb on + strand, within AO356_22290at 4985.494 kb on - strand, within AO356_22290at 4985.511 kb on + strand, within AO356_22290at 4985.512 kb on - strand, within AO356_22290at 4985.639 kb on + strand, within AO356_22290at 4985.758 kb on + strand, within AO356_22290at 4985.758 kb on + strand, within AO356_22290at 4986.070 kb on - strand, within AO356_22290at 4986.304 kb on + strandat 4986.304 kb on + strandat 4986.386 kb on + strand, within AO356_22295at 4986.386 kb on + strand, within AO356_22295at 4986.386 kb on + strand, within AO356_22295at 4986.386 kb on + strand, within AO356_22295at 4986.387 kb on - strand, within AO356_22295at 4986.387 kb on - strand, within AO356_22295at 4986.387 kb on - strand, within AO356_22295at 4986.387 kb on - strand, within AO356_22295at 4986.422 kb on + strand, within AO356_22295at 4986.423 kb on - strand, within AO356_22295at 4986.458 kb on + strand, within AO356_22295at 4986.458 kb on + strand, within AO356_22295at 4986.459 kb on - strand, within AO356_22295at 4986.717 kb on - strand, within AO356_22295at 4986.723 kb on - strand, within AO356_22295at 4986.723 kb on - strand, within AO356_22295at 4986.927 kb on - strand, within AO356_22295at 4986.927 kb on - strand, within AO356_22295at 4986.962 kb on + strand, within AO356_22295at 4986.962 kb on + strand, within AO356_22295at 4986.963 kb on - strand, within AO356_22295at 4986.963 kb on - strand, within AO356_22295at 4987.052 kb on + strand, within AO356_22295at 4987.052 kb on + strand, within AO356_22295at 4987.053 kb on - strand, within AO356_22295at 4987.151 kb on + strand, within AO356_22295at 4987.329 kb on + strandat 4987.330 kb on - strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.521 kb on - strandat 4987.521 kb on - strandat 4987.586 kb on + strandat 4987.788 kb on + strand, within AO356_22300at 4987.789 kb on - strand, within AO356_22300at 4987.797 kb on + strand, within AO356_22300at 4987.830 kb on + strand, within AO356_22300at 4987.831 kb on - strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.854 kb on + strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4988.033 kb on + strand, within AO356_22300at 4988.034 kb on - strand, within AO356_22300at 4988.034 kb on - strand, within AO356_22300at 4988.076 kb on + strand, within AO356_22300at 4988.076 kb on + strand, within AO356_22300at 4988.185 kb on - strand, within AO356_22300at 4988.235 kb on + strand, within AO356_22300at 4988.235 kb on + strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.239 kb on - strand, within AO356_22300

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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4,985,493 + AO356_22290 0.34 +0.5
4,985,494 - AO356_22290 0.35 +0.4
4,985,511 + AO356_22290 0.36 +0.8
4,985,512 - AO356_22290 0.36 +0.5
4,985,639 + AO356_22290 0.47 -0.0
4,985,758 + AO356_22290 0.57 -0.1
4,985,758 + AO356_22290 0.57 +1.1
4,986,070 - AO356_22290 0.84 +0.9
4,986,304 + -2.0
4,986,304 + -0.4
4,986,386 + AO356_22295 0.12 +0.2
4,986,386 + AO356_22295 0.12 +1.1
4,986,386 + AO356_22295 0.12 +0.8
4,986,386 + AO356_22295 0.12 +0.2
4,986,387 - AO356_22295 0.12 -0.5
4,986,387 - AO356_22295 0.12 -0.4
4,986,387 - AO356_22295 0.12 +0.5
4,986,387 - AO356_22295 0.12 +0.3
4,986,422 + AO356_22295 0.15 -1.1
4,986,423 - AO356_22295 0.15 -0.7
4,986,458 + AO356_22295 0.18 -1.1
4,986,458 + AO356_22295 0.18 +0.6
4,986,459 - AO356_22295 0.18 -0.6
4,986,717 - AO356_22295 0.42 -0.6
4,986,723 - AO356_22295 0.43 -0.1
4,986,723 - AO356_22295 0.43 +0.2
4,986,927 - AO356_22295 0.62 -0.5
4,986,927 - AO356_22295 0.62 -0.0
4,986,962 + AO356_22295 0.65 -0.4
4,986,962 + AO356_22295 0.65 +0.4
4,986,963 - AO356_22295 0.65 +0.2
4,986,963 - AO356_22295 0.65 +0.6
4,987,052 + AO356_22295 0.73 +0.3
4,987,052 + AO356_22295 0.73 -0.3
4,987,053 - AO356_22295 0.73 +0.9
4,987,151 + AO356_22295 0.82 -0.1
4,987,329 + +0.1
4,987,330 - -0.3
4,987,520 + +0.0
4,987,520 + +0.0
4,987,520 + +0.2
4,987,520 + -0.2
4,987,520 + +0.5
4,987,521 - +0.8
4,987,521 - -0.3
4,987,586 + -1.3
4,987,788 + AO356_22300 0.20 +0.7
4,987,789 - AO356_22300 0.21 -0.2
4,987,797 + AO356_22300 0.21 +0.5
4,987,830 + AO356_22300 0.24 +0.8
4,987,831 - AO356_22300 0.24 -0.5
4,987,834 + AO356_22300 0.24 +0.6
4,987,834 + AO356_22300 0.24 +1.2
4,987,834 + AO356_22300 0.24 -0.4
4,987,834 + AO356_22300 0.24 -1.6
4,987,835 - AO356_22300 0.24 +0.3
4,987,835 - AO356_22300 0.24 +0.4
4,987,835 - AO356_22300 0.24 -0.6
4,987,835 - AO356_22300 0.24 +0.5
4,987,835 - AO356_22300 0.24 +0.6
4,987,835 - AO356_22300 0.24 +0.8
4,987,835 - AO356_22300 0.24 +0.8
4,987,835 - AO356_22300 0.24 -0.1
4,987,842 + AO356_22300 0.25 -0.1
4,987,842 + AO356_22300 0.25 +0.5
4,987,842 + AO356_22300 0.25 +0.8
4,987,842 + AO356_22300 0.25 +0.6
4,987,842 + AO356_22300 0.25 +1.3
4,987,842 + AO356_22300 0.25 -0.4
4,987,843 - AO356_22300 0.25 +0.3
4,987,843 - AO356_22300 0.25 +0.3
4,987,843 - AO356_22300 0.25 +1.4
4,987,843 - AO356_22300 0.25 -0.6
4,987,843 - AO356_22300 0.25 +0.7
4,987,843 - AO356_22300 0.25 -0.3
4,987,854 + AO356_22300 0.26 -2.2
4,987,855 - AO356_22300 0.26 -1.2
4,987,855 - AO356_22300 0.26 -0.6
4,987,855 - AO356_22300 0.26 +0.6
4,987,855 - AO356_22300 0.26 +0.2
4,987,855 - AO356_22300 0.26 -0.9
4,988,033 + AO356_22300 0.40 -0.4
4,988,034 - AO356_22300 0.40 -0.6
4,988,034 - AO356_22300 0.40 -0.0
4,988,076 + AO356_22300 0.44 +0.4
4,988,076 + AO356_22300 0.44 -0.5
4,988,185 - AO356_22300 0.53 +0.1
4,988,235 + AO356_22300 0.57 -1.7
4,988,235 + AO356_22300 0.57 +0.6
4,988,236 - AO356_22300 0.57 +0.4
4,988,236 - AO356_22300 0.57 +1.0
4,988,236 - AO356_22300 0.57 -1.0
4,988,239 - AO356_22300 0.57 -0.5

Or see this region's nucleotide sequence