Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07530

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07515 and AO356_07520 are separated by 97 nucleotidesAO356_07520 and AO356_07525 are separated by 59 nucleotidesAO356_07525 and AO356_07530 overlap by 4 nucleotidesAO356_07530 and AO356_07535 are separated by 7 nucleotides AO356_07515: AO356_07515 - Fur family transcriptional regulator, at 1,665,133 to 1,665,537 _07515 AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162 _07520 AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524 _07525 AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964 _07530 AO356_07535: AO356_07535 - symporter, at 1,666,972 to 1,668,375 _07535 Position (kb) 1666 1667Strain fitness (log2 ratio) -1 0 1at 1666.160 kb on + strandat 1666.224 kb on - strandat 1666.502 kb on + strandat 1666.502 kb on + strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1667.000 kb on - strandat 1667.000 kb on - strandat 1667.000 kb on - strandat 1667.025 kb on - strandat 1667.025 kb on - strandat 1667.025 kb on - strandat 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.636 kb on + strand, within AO356_07535at 1667.636 kb on + strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.645 kb on + strand, within AO356_07535at 1667.646 kb on - strand, within AO356_07535at 1667.646 kb on - strand, within AO356_07535at 1667.646 kb on - strand, within AO356_07535at 1667.787 kb on - strand, within AO356_07535at 1667.787 kb on - strand, within AO356_07535at 1667.952 kb on - strand, within AO356_07535at 1667.952 kb on - strand, within AO356_07535

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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1,666,160 + -0.8
1,666,224 - +0.7
1,666,502 + +0.2
1,666,502 + +1.0
1,666,503 - -0.2
1,666,503 - +0.8
1,666,503 - +1.2
1,666,514 - -0.2
1,666,514 - -0.3
1,666,514 - +0.5
1,666,967 - +0.8
1,666,967 - -0.9
1,666,967 - +0.5
1,666,967 - +0.5
1,666,967 - +0.9
1,666,967 - +0.1
1,666,967 - -1.0
1,666,967 - +1.1
1,666,967 - +0.5
1,666,967 - -0.4
1,667,000 - -0.9
1,667,000 - +0.4
1,667,000 - -0.1
1,667,025 - -0.6
1,667,025 - +0.0
1,667,025 - -0.1
1,667,267 - AO356_07535 0.21 -0.1
1,667,267 - AO356_07535 0.21 +0.3
1,667,267 - AO356_07535 0.21 +0.2
1,667,267 - AO356_07535 0.21 +0.3
1,667,267 - AO356_07535 0.21 +0.6
1,667,267 - AO356_07535 0.21 +0.0
1,667,267 - AO356_07535 0.21 -0.3
1,667,267 - AO356_07535 0.21 +0.5
1,667,267 - AO356_07535 0.21 +0.4
1,667,269 - AO356_07535 0.21 -0.1
1,667,269 - AO356_07535 0.21 +0.4
1,667,269 - AO356_07535 0.21 +0.5
1,667,269 - AO356_07535 0.21 -0.5
1,667,269 - AO356_07535 0.21 +0.7
1,667,269 - AO356_07535 0.21 -0.3
1,667,269 - AO356_07535 0.21 -0.2
1,667,269 - AO356_07535 0.21 -0.1
1,667,269 - AO356_07535 0.21 -1.0
1,667,269 - AO356_07535 0.21 +0.1
1,667,269 - AO356_07535 0.21 -0.2
1,667,269 - AO356_07535 0.21 -0.4
1,667,367 - AO356_07535 0.28 +0.1
1,667,367 - AO356_07535 0.28 -0.5
1,667,367 - AO356_07535 0.28 -0.2
1,667,367 - AO356_07535 0.28 +0.1
1,667,367 - AO356_07535 0.28 -0.1
1,667,367 - AO356_07535 0.28 +1.2
1,667,367 - AO356_07535 0.28 -0.0
1,667,367 - AO356_07535 0.28 +0.3
1,667,367 - AO356_07535 0.28 -0.8
1,667,636 + AO356_07535 0.47 -0.8
1,667,636 + AO356_07535 0.47 +1.0
1,667,637 - AO356_07535 0.47 -0.0
1,667,637 - AO356_07535 0.47 +0.8
1,667,637 - AO356_07535 0.47 -0.2
1,667,637 - AO356_07535 0.47 +0.8
1,667,637 - AO356_07535 0.47 +1.0
1,667,637 - AO356_07535 0.47 -1.5
1,667,645 + AO356_07535 0.48 -0.2
1,667,646 - AO356_07535 0.48 -0.8
1,667,646 - AO356_07535 0.48 +0.9
1,667,646 - AO356_07535 0.48 -0.0
1,667,787 - AO356_07535 0.58 -0.2
1,667,787 - AO356_07535 0.58 +0.6
1,667,952 - AO356_07535 0.70 -0.2
1,667,952 - AO356_07535 0.70 +0.5

Or see this region's nucleotide sequence