Experiment: Minimal media pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01945 and AO356_01950 overlap by 4 nucleotides AO356_01950 and AO356_01955 are separated by 80 nucleotides AO356_01955 and AO356_01960 are separated by 6 nucleotides
AO356_01945: AO356_01945 - hypothetical protein, at 433,721 to 433,999
_01945
AO356_01950: AO356_01950 - hypothetical protein, at 433,996 to 434,481
_01950
AO356_01955: AO356_01955 - hypothetical protein, at 434,562 to 435,134
_01955
AO356_01960: AO356_01960 - Presumed portal vertex protein, at 435,141 to 436,163
_01960
Position (kb)
433
434
435 Strain fitness (log2 ratio)
-2
-1
0
1 at 433.001 kb on + strand at 433.011 kb on - strand at 433.057 kb on - strand at 433.095 kb on + strand at 433.115 kb on + strand at 433.115 kb on + strand at 433.116 kb on - strand at 433.157 kb on - strand at 433.188 kb on + strand at 433.189 kb on - strand at 433.189 kb on - strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.205 kb on - strand at 433.205 kb on - strand at 433.249 kb on + strand at 433.249 kb on + strand at 433.249 kb on + strand at 433.249 kb on + strand at 433.250 kb on - strand at 433.250 kb on - strand at 433.250 kb on - strand at 433.266 kb on - strand at 433.266 kb on - strand at 433.330 kb on + strand at 433.330 kb on + strand at 433.330 kb on + strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.334 kb on + strand at 433.335 kb on - strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.487 kb on - strand at 433.487 kb on - strand at 433.487 kb on - strand at 433.500 kb on - strand at 433.523 kb on + strand at 433.560 kb on + strand at 433.595 kb on - strand at 433.640 kb on - strand at 433.673 kb on + strand at 433.674 kb on - strand at 433.675 kb on + strand at 433.676 kb on - strand at 433.858 kb on - strand, within AO356_01945 at 433.923 kb on - strand, within AO356_01945 at 433.979 kb on - strand at 433.995 kb on + strand at 433.995 kb on + strand at 434.039 kb on + strand at 434.064 kb on - strand, within AO356_01950 at 434.116 kb on + strand, within AO356_01950 at 434.223 kb on - strand, within AO356_01950 at 434.275 kb on - strand, within AO356_01950 at 434.327 kb on + strand, within AO356_01950 at 434.327 kb on + strand, within AO356_01950 at 434.351 kb on + strand, within AO356_01950 at 434.380 kb on + strand, within AO356_01950 at 434.380 kb on + strand, within AO356_01950 at 434.381 kb on - strand, within AO356_01950 at 434.413 kb on - strand, within AO356_01950 at 434.479 kb on + strand at 434.523 kb on - strand at 434.655 kb on - strand, within AO356_01955 at 434.659 kb on - strand, within AO356_01955 at 434.743 kb on + strand, within AO356_01955 at 434.927 kb on + strand, within AO356_01955 at 434.941 kb on + strand, within AO356_01955 at 434.974 kb on + strand, within AO356_01955 at 434.980 kb on - strand, within AO356_01955 at 435.035 kb on + strand, within AO356_01955 at 435.086 kb on + strand at 435.086 kb on + strand at 435.087 kb on - strand at 435.128 kb on + strand at 435.132 kb on + strand at 435.132 kb on + strand at 435.133 kb on - strand at 435.142 kb on + strand at 435.142 kb on + strand at 435.144 kb on + strand at 435.144 kb on + strand at 435.160 kb on + strand at 435.248 kb on - strand, within AO356_01960 at 435.323 kb on + strand, within AO356_01960 at 435.324 kb on - strand, within AO356_01960 at 435.324 kb on - strand, within AO356_01960 at 435.429 kb on - strand, within AO356_01960 at 435.442 kb on + strand, within AO356_01960 at 435.442 kb on + strand, within AO356_01960 at 435.443 kb on - strand, within AO356_01960
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH8 remove 433,001 + +0.8 433,011 - -0.4 433,057 - +0.2 433,095 + +1.1 433,115 + -0.2 433,115 + +0.0 433,116 - +0.3 433,157 - +0.9 433,188 + -0.2 433,189 - +1.0 433,189 - -0.3 433,204 + -0.2 433,204 + -0.4 433,204 + -0.0 433,204 + -0.6 433,204 + -0.5 433,205 - -0.9 433,205 - -0.5 433,249 + +0.6 433,249 + -0.8 433,249 + +0.1 433,249 + +0.1 433,250 - -0.5 433,250 - +0.9 433,250 - -0.5 433,266 - +0.1 433,266 - +0.0 433,330 + -0.0 433,330 + -1.4 433,330 + -0.9 433,331 - +0.8 433,331 - +1.1 433,331 - +0.8 433,331 - +0.7 433,331 - -0.6 433,334 + +0.2 433,335 - +0.3 433,467 + +0.3 433,467 + +0.8 433,467 + +0.4 433,467 + -1.6 433,467 + +1.2 433,467 + -0.3 433,467 + +0.2 433,467 + -0.2 433,467 + +0.1 433,467 + -0.3 433,467 + -0.4 433,467 + -0.4 433,467 + +0.6 433,467 + -0.2 433,468 - +0.3 433,468 - +0.0 433,468 - +0.4 433,468 - -0.4 433,468 - +0.1 433,468 - +0.0 433,468 - +0.4 433,468 - -0.1 433,468 - +1.3 433,468 - -0.6 433,468 - +0.3 433,468 - -0.7 433,468 - +0.2 433,468 - +0.4 433,468 - +0.5 433,468 - -0.0 433,487 - +0.3 433,487 - +0.6 433,487 - +0.4 433,500 - +0.4 433,523 + -0.6 433,560 + -0.1 433,595 - -0.3 433,640 - -1.3 433,673 + -1.1 433,674 - -0.0 433,675 + +0.5 433,676 - -2.3 433,858 - AO356_01945 0.49 -0.1 433,923 - AO356_01945 0.72 +0.4 433,979 - -0.8 433,995 + +0.1 433,995 + +0.1 434,039 + +0.7 434,064 - AO356_01950 0.14 +0.4 434,116 + AO356_01950 0.25 +0.2 434,223 - AO356_01950 0.47 +0.4 434,275 - AO356_01950 0.57 +0.5 434,327 + AO356_01950 0.68 +1.3 434,327 + AO356_01950 0.68 -0.8 434,351 + AO356_01950 0.73 -0.3 434,380 + AO356_01950 0.79 -1.3 434,380 + AO356_01950 0.79 -0.1 434,381 - AO356_01950 0.79 -0.6 434,413 - AO356_01950 0.86 -0.1 434,479 + +0.2 434,523 - +0.3 434,655 - AO356_01955 0.16 -1.3 434,659 - AO356_01955 0.17 +1.3 434,743 + AO356_01955 0.32 -0.4 434,927 + AO356_01955 0.64 +0.3 434,941 + AO356_01955 0.66 +0.6 434,974 + AO356_01955 0.72 +1.0 434,980 - AO356_01955 0.73 -0.2 435,035 + AO356_01955 0.83 +1.0 435,086 + -1.5 435,086 + +0.1 435,087 - -0.1 435,128 + -0.1 435,132 + +0.4 435,132 + +1.4 435,133 - -1.0 435,142 + -0.2 435,142 + -1.2 435,144 + +1.0 435,144 + -0.2 435,160 + +0.6 435,248 - AO356_01960 0.10 +1.1 435,323 + AO356_01960 0.18 -2.0 435,324 - AO356_01960 0.18 +0.1 435,324 - AO356_01960 0.18 +0.3 435,429 - AO356_01960 0.28 -0.7 435,442 + AO356_01960 0.29 -0.4 435,442 + AO356_01960 0.29 +1.3 435,443 - AO356_01960 0.30 +1.0
Or see this region's nucleotide sequence