Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01805

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01795 and AO356_01800 are separated by 26 nucleotidesAO356_01800 and AO356_01805 are separated by 140 nucleotidesAO356_01805 and AO356_01810 overlap by 4 nucleotides AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284 _01795 AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562 _01800 AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599 _01805 AO356_01810: AO356_01810 - MFS transporter, at 404,596 to 405,756 _01810 Position (kb) 403 404 405Strain fitness (log2 ratio) -2 -1 0 1at 403.154 kb on - strand, within AO356_01795at 403.204 kb on + strand, within AO356_01795at 403.205 kb on - strand, within AO356_01795at 403.271 kb on - strandat 403.277 kb on + strandat 403.278 kb on - strandat 403.278 kb on - strandat 403.278 kb on - strandat 403.312 kb on + strandat 403.312 kb on + strandat 403.312 kb on + strandat 403.312 kb on + strandat 403.555 kb on + strandat 403.555 kb on + strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.586 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.713 kb on - strandat 403.713 kb on - strandat 403.727 kb on + strandat 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.834 kb on + strand, within AO356_01805at 403.835 kb on - strand, within AO356_01805at 403.905 kb on - strand, within AO356_01805at 404.025 kb on - strand, within AO356_01805at 404.466 kb on - strand, within AO356_01805at 404.472 kb on + strand, within AO356_01805at 404.472 kb on + strand, within AO356_01805at 404.513 kb on + strandat 404.513 kb on + strandat 404.514 kb on - strandat 404.597 kb on + strandat 404.598 kb on - strandat 404.598 kb on - strandat 404.598 kb on - strandat 405.007 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.099 kb on - strand, within AO356_01810at 405.227 kb on + strand, within AO356_01810at 405.228 kb on - strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.232 kb on - strand, within AO356_01810at 405.232 kb on - strand, within AO356_01810

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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403,154 - AO356_01795 0.83 +1.0
403,204 + AO356_01795 0.89 +0.2
403,205 - AO356_01795 0.89 -1.3
403,271 - -0.8
403,277 + +0.5
403,278 - -0.5
403,278 - +0.2
403,278 - +1.6
403,312 + +0.7
403,312 + +1.2
403,312 + -0.3
403,312 + -2.0
403,555 + +0.6
403,555 + -2.2
403,556 - +0.4
403,556 - +1.4
403,556 - +0.1
403,556 - -0.1
403,556 - +1.2
403,556 - -0.1
403,586 + -1.8
403,628 + -0.2
403,628 + +1.1
403,628 + +0.9
403,628 + +0.0
403,628 + -0.8
403,628 + -0.3
403,628 + +1.6
403,628 + -0.0
403,628 + +0.6
403,628 + +0.0
403,628 + +0.5
403,628 + -0.8
403,628 + -0.8
403,629 - -0.6
403,629 - +0.7
403,629 - +0.8
403,629 - +0.1
403,713 - -0.0
403,713 - +1.2
403,727 + +0.3
403,832 + AO356_01805 0.14 -0.1
403,832 + AO356_01805 0.14 -0.6
403,832 + AO356_01805 0.14 +0.3
403,832 + AO356_01805 0.14 +1.4
403,832 + AO356_01805 0.14 -0.4
403,832 + AO356_01805 0.14 -0.3
403,832 + AO356_01805 0.14 +0.8
403,832 + AO356_01805 0.14 +0.2
403,833 - AO356_01805 0.14 +0.3
403,833 - AO356_01805 0.14 +0.5
403,833 - AO356_01805 0.14 +0.5
403,833 - AO356_01805 0.14 +1.4
403,833 - AO356_01805 0.14 +0.4
403,834 + AO356_01805 0.15 -0.1
403,835 - AO356_01805 0.15 +0.3
403,905 - AO356_01805 0.23 +0.2
404,025 - AO356_01805 0.36 -0.8
404,466 - AO356_01805 0.85 +0.5
404,472 + AO356_01805 0.86 -0.1
404,472 + AO356_01805 0.86 +0.8
404,513 + -1.0
404,513 + +0.2
404,514 - -0.2
404,597 + +0.2
404,598 - +0.6
404,598 - +0.2
404,598 - -0.4
405,007 + AO356_01810 0.35 +0.1
405,092 + AO356_01810 0.43 +0.1
405,092 + AO356_01810 0.43 +0.5
405,092 + AO356_01810 0.43 -1.6
405,093 - AO356_01810 0.43 +0.8
405,093 - AO356_01810 0.43 -0.7
405,093 - AO356_01810 0.43 +0.8
405,093 - AO356_01810 0.43 +0.1
405,093 - AO356_01810 0.43 +0.2
405,093 - AO356_01810 0.43 +0.9
405,098 + AO356_01810 0.43 -0.8
405,098 + AO356_01810 0.43 +0.8
405,098 + AO356_01810 0.43 -0.4
405,099 - AO356_01810 0.43 +1.0
405,227 + AO356_01810 0.54 -0.0
405,228 - AO356_01810 0.54 +0.0
405,231 + AO356_01810 0.55 +1.0
405,231 + AO356_01810 0.55 -0.2
405,231 + AO356_01810 0.55 +0.7
405,232 - AO356_01810 0.55 -0.5
405,232 - AO356_01810 0.55 +0.5

Or see this region's nucleotide sequence