Experiment: Minimal media pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00160 and AO356_00165 are separated by 9 nucleotides AO356_00165 and AO356_00170 overlap by 19 nucleotides AO356_00170 and AO356_00175 overlap by 4 nucleotides AO356_00175 and AO356_00180 are separated by 9 nucleotides
AO356_00160: AO356_00160 - chemotaxis protein, at 29,493 to 30,164
_00160
AO356_00165: AO356_00165 - hypothetical protein, at 30,174 to 30,893
_00165
AO356_00170: AO356_00170 - lytic transglycosylase, at 30,875 to 31,423
_00170
AO356_00175: AO356_00175 - conjugal transfer protein, at 31,420 to 31,935
_00175
AO356_00180: AO356_00180 - conjugal transfer protein TraG, at 31,945 to 34,050
_00180
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 30.029 kb on + strand, within AO356_00160 at 30.187 kb on + strand at 30.472 kb on + strand, within AO356_00165 at 30.473 kb on - strand, within AO356_00165 at 30.522 kb on + strand, within AO356_00165 at 30.522 kb on + strand, within AO356_00165 at 30.523 kb on - strand, within AO356_00165 at 30.629 kb on - strand, within AO356_00165 at 30.629 kb on - strand, within AO356_00165 at 30.696 kb on - strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.699 kb on + strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.700 kb on - strand, within AO356_00165 at 30.703 kb on + strand, within AO356_00165 at 30.703 kb on + strand, within AO356_00165 at 30.703 kb on + strand, within AO356_00165 at 30.704 kb on - strand, within AO356_00165 at 30.792 kb on - strand, within AO356_00165 at 30.898 kb on + strand at 31.126 kb on - strand, within AO356_00170 at 31.189 kb on - strand, within AO356_00170 at 31.266 kb on + strand, within AO356_00170 at 31.319 kb on + strand, within AO356_00170 at 31.437 kb on + strand at 31.461 kb on - strand at 31.461 kb on - strand at 31.554 kb on + strand, within AO356_00175 at 31.554 kb on + strand, within AO356_00175 at 31.555 kb on - strand, within AO356_00175 at 31.555 kb on - strand, within AO356_00175 at 31.689 kb on - strand, within AO356_00175 at 31.845 kb on + strand, within AO356_00175 at 31.845 kb on + strand, within AO356_00175 at 31.846 kb on - strand, within AO356_00175 at 31.898 kb on - strand at 31.993 kb on + strand at 31.993 kb on + strand at 31.994 kb on - strand at 31.994 kb on - strand at 31.994 kb on - strand at 31.994 kb on - strand at 32.000 kb on + strand at 32.035 kb on + strand at 32.092 kb on + strand at 32.093 kb on - strand at 32.094 kb on + strand at 32.146 kb on - strand at 32.146 kb on - strand at 32.155 kb on - strand at 32.373 kb on + strand, within AO356_00180 at 32.374 kb on - strand, within AO356_00180
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH8 remove 30,029 + AO356_00160 0.80 -0.0 30,187 + +0.6 30,472 + AO356_00165 0.41 -1.0 30,473 - AO356_00165 0.42 +1.9 30,522 + AO356_00165 0.48 +1.2 30,522 + AO356_00165 0.48 -0.4 30,523 - AO356_00165 0.48 -0.1 30,629 - AO356_00165 0.63 +0.2 30,629 - AO356_00165 0.63 +0.9 30,696 - AO356_00165 0.72 +0.5 30,699 + AO356_00165 0.73 +0.8 30,699 + AO356_00165 0.73 +0.5 30,699 + AO356_00165 0.73 +0.8 30,699 + AO356_00165 0.73 +0.5 30,699 + AO356_00165 0.73 -0.4 30,700 - AO356_00165 0.73 +0.3 30,700 - AO356_00165 0.73 -0.9 30,700 - AO356_00165 0.73 -0.2 30,700 - AO356_00165 0.73 +0.8 30,703 + AO356_00165 0.73 +0.2 30,703 + AO356_00165 0.73 -0.6 30,703 + AO356_00165 0.73 +0.5 30,704 - AO356_00165 0.74 -0.0 30,792 - AO356_00165 0.86 -0.2 30,898 + +0.4 31,126 - AO356_00170 0.46 +0.6 31,189 - AO356_00170 0.57 +0.5 31,266 + AO356_00170 0.71 +1.6 31,319 + AO356_00170 0.81 +1.0 31,437 + -0.9 31,461 - +1.0 31,461 - +0.3 31,554 + AO356_00175 0.26 -1.9 31,554 + AO356_00175 0.26 -1.1 31,555 - AO356_00175 0.26 +0.8 31,555 - AO356_00175 0.26 +1.4 31,689 - AO356_00175 0.52 +0.9 31,845 + AO356_00175 0.82 +0.2 31,845 + AO356_00175 0.82 -0.2 31,846 - AO356_00175 0.83 -1.7 31,898 - +0.5 31,993 + +0.1 31,993 + +0.3 31,994 - -0.5 31,994 - +0.1 31,994 - -1.1 31,994 - +0.7 32,000 + -0.2 32,035 + -1.7 32,092 + +0.7 32,093 - +1.0 32,094 + -1.3 32,146 - +0.2 32,146 - +0.8 32,155 - -0.1 32,373 + AO356_00180 0.20 +0.8 32,374 - AO356_00180 0.20 +0.6
Or see this region's nucleotide sequence