Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21710 and ABZR87_RS21715 are separated by 24 nucleotides ABZR87_RS21715 and ABZR87_RS21720 are separated by 101 nucleotides ABZR87_RS21720 and ABZR87_RS21725 are separated by 196 nucleotides
ABZR87_RS21710: ABZR87_RS21710 - efflux RND transporter periplasmic adaptor subunit, at 1,256,074 to 1,257,264
_RS21710
ABZR87_RS21715: ABZR87_RS21715 - TolC family protein, at 1,257,289 to 1,258,458
_RS21715
ABZR87_RS21720: ABZR87_RS21720 - hypothetical protein, at 1,258,560 to 1,258,913
_RS21720
ABZR87_RS21725: ABZR87_RS21725 - heavy metal response regulator transcription factor, at 1,259,110 to 1,259,784
_RS21725
Position (kb) 1257
1258
1259 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1256.423 kb on + strand, within ABZR87_RS21710 at 1256.423 kb on + strand, within ABZR87_RS21710 at 1256.423 kb on + strand, within ABZR87_RS21710 at 1256.423 kb on + strand, within ABZR87_RS21710 at 1256.424 kb on - strand, within ABZR87_RS21710 at 1256.424 kb on - strand, within ABZR87_RS21710 at 1256.424 kb on - strand, within ABZR87_RS21710 at 1256.424 kb on - strand, within ABZR87_RS21710 at 1256.751 kb on - strand, within ABZR87_RS21710 at 1257.353 kb on + strand at 1257.354 kb on - strand at 1257.354 kb on - strand at 1257.976 kb on + strand, within ABZR87_RS21715 at 1258.358 kb on + strand at 1258.358 kb on + strand at 1258.561 kb on + strand at 1258.561 kb on + strand at 1258.562 kb on - strand at 1258.583 kb on - strand at 1258.583 kb on - strand at 1258.625 kb on - strand, within ABZR87_RS21720 at 1258.625 kb on - strand, within ABZR87_RS21720 at 1258.682 kb on - strand, within ABZR87_RS21720 at 1258.682 kb on - strand, within ABZR87_RS21720 at 1258.715 kb on + strand, within ABZR87_RS21720 at 1258.716 kb on - strand, within ABZR87_RS21720 at 1258.716 kb on - strand, within ABZR87_RS21720 at 1258.717 kb on + strand, within ABZR87_RS21720 at 1258.718 kb on - strand, within ABZR87_RS21720 at 1259.064 kb on + strand at 1259.064 kb on + strand at 1259.065 kb on - strand at 1259.065 kb on - strand at 1259.153 kb on - strand at 1259.242 kb on + strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.398 kb on + strand, within ABZR87_RS21725 at 1259.398 kb on + strand, within ABZR87_RS21725 at 1259.398 kb on + strand, within ABZR87_RS21725 at 1259.399 kb on - strand, within ABZR87_RS21725
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,256,423 + ABZR87_RS21710 0.29 +0.1 1,256,423 + ABZR87_RS21710 0.29 -0.5 1,256,423 + ABZR87_RS21710 0.29 -0.6 1,256,423 + ABZR87_RS21710 0.29 -0.3 1,256,424 - ABZR87_RS21710 0.29 -1.0 1,256,424 - ABZR87_RS21710 0.29 +0.5 1,256,424 - ABZR87_RS21710 0.29 -1.0 1,256,424 - ABZR87_RS21710 0.29 +0.1 1,256,751 - ABZR87_RS21710 0.57 -0.8 1,257,353 + +0.2 1,257,354 - -0.1 1,257,354 - -0.9 1,257,976 + ABZR87_RS21715 0.59 +1.1 1,258,358 + -1.0 1,258,358 + +0.0 1,258,561 + -0.6 1,258,561 + -0.2 1,258,562 - +0.6 1,258,583 - +1.5 1,258,583 - +0.9 1,258,625 - ABZR87_RS21720 0.18 -0.0 1,258,625 - ABZR87_RS21720 0.18 -0.6 1,258,682 - ABZR87_RS21720 0.34 +0.7 1,258,682 - ABZR87_RS21720 0.34 +1.4 1,258,715 + ABZR87_RS21720 0.44 +2.9 1,258,716 - ABZR87_RS21720 0.44 +0.6 1,258,716 - ABZR87_RS21720 0.44 +0.0 1,258,717 + ABZR87_RS21720 0.44 -0.1 1,258,718 - ABZR87_RS21720 0.45 +1.1 1,259,064 + +0.3 1,259,064 + +1.4 1,259,065 - -2.3 1,259,065 - +0.4 1,259,153 - +1.1 1,259,242 + ABZR87_RS21725 0.20 +0.2 1,259,243 - ABZR87_RS21725 0.20 +0.3 1,259,243 - ABZR87_RS21725 0.20 -0.1 1,259,243 - ABZR87_RS21725 0.20 -0.4 1,259,243 - ABZR87_RS21725 0.20 +0.7 1,259,243 - ABZR87_RS21725 0.20 +0.2 1,259,398 + ABZR87_RS21725 0.43 -0.1 1,259,398 + ABZR87_RS21725 0.43 +0.6 1,259,398 + ABZR87_RS21725 0.43 -0.5 1,259,399 - ABZR87_RS21725 0.43 -0.4
Or see this region's nucleotide sequence