Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20540

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20535 and ABZR87_RS20540 are separated by 55 nucleotidesABZR87_RS20540 and ABZR87_RS20545 are separated by 129 nucleotidesABZR87_RS20545 and ABZR87_RS20550 overlap by 4 nucleotides ABZR87_RS20535: ABZR87_RS20535 - elongation factor G, at 992,840 to 994,942 _RS20535 ABZR87_RS20540: ABZR87_RS20540 - LysR family transcriptional regulator, at 994,998 to 995,912 _RS20540 ABZR87_RS20545: ABZR87_RS20545 - aldo/keto reductase, at 996,042 to 996,875 _RS20545 ABZR87_RS20550: ABZR87_RS20550 - SLC13 family permease, at 996,872 to 998,029 _RS20550 Position (kb) 994 995 996Strain fitness (log2 ratio) -2 -1 0 1 2 3at 994.421 kb on + strand, within ABZR87_RS20535at 994.422 kb on - strand, within ABZR87_RS20535at 994.568 kb on + strand, within ABZR87_RS20535at 994.568 kb on + strand, within ABZR87_RS20535at 994.569 kb on - strand, within ABZR87_RS20535at 994.569 kb on - strand, within ABZR87_RS20535at 994.569 kb on - strand, within ABZR87_RS20535at 994.700 kb on + strand, within ABZR87_RS20535at 994.700 kb on + strand, within ABZR87_RS20535at 994.865 kb on + strandat 994.866 kb on - strandat 994.866 kb on - strandat 994.866 kb on - strandat 994.866 kb on - strandat 994.866 kb on - strandat 994.887 kb on - strandat 994.973 kb on + strandat 994.999 kb on + strandat 995.000 kb on - strandat 995.000 kb on - strandat 995.033 kb on + strandat 995.034 kb on - strandat 995.060 kb on - strandat 995.074 kb on + strandat 995.075 kb on - strandat 995.083 kb on + strandat 995.083 kb on + strandat 995.084 kb on - strandat 995.314 kb on + strand, within ABZR87_RS20540at 995.314 kb on + strand, within ABZR87_RS20540at 995.314 kb on + strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.704 kb on + strand, within ABZR87_RS20540at 995.704 kb on + strand, within ABZR87_RS20540at 995.879 kb on + strandat 995.879 kb on + strandat 995.880 kb on - strandat 995.880 kb on - strandat 995.935 kb on + strandat 995.936 kb on - strandat 995.970 kb on + strandat 995.980 kb on - strandat 996.183 kb on + strand, within ABZR87_RS20545at 996.183 kb on + strand, within ABZR87_RS20545at 996.183 kb on + strand, within ABZR87_RS20545at 996.183 kb on + strand, within ABZR87_RS20545at 996.184 kb on - strand, within ABZR87_RS20545at 996.184 kb on - strand, within ABZR87_RS20545at 996.184 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.449 kb on + strand, within ABZR87_RS20545at 996.449 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.523 kb on - strand, within ABZR87_RS20545at 996.550 kb on + strand, within ABZR87_RS20545at 996.551 kb on - strand, within ABZR87_RS20545at 996.558 kb on + strand, within ABZR87_RS20545at 996.559 kb on - strand, within ABZR87_RS20545at 996.591 kb on + strand, within ABZR87_RS20545at 996.680 kb on + strand, within ABZR87_RS20545at 996.680 kb on + strand, within ABZR87_RS20545at 996.681 kb on - strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.705 kb on - strand, within ABZR87_RS20545at 996.705 kb on - strand, within ABZR87_RS20545at 996.705 kb on - strand, within ABZR87_RS20545at 996.829 kb on - strandat 996.829 kb on - strandat 996.829 kb on - strandat 996.829 kb on - strandat 996.874 kb on - strandat 996.897 kb on + strandat 996.897 kb on + strandat 996.897 kb on + strandat 996.898 kb on - strandat 996.898 kb on - strandat 996.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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994,421 + ABZR87_RS20535 0.75 -1.5
994,422 - ABZR87_RS20535 0.75 -0.2
994,568 + ABZR87_RS20535 0.82 -0.2
994,568 + ABZR87_RS20535 0.82 -1.8
994,569 - ABZR87_RS20535 0.82 +0.2
994,569 - ABZR87_RS20535 0.82 -0.6
994,569 - ABZR87_RS20535 0.82 -0.7
994,700 + ABZR87_RS20535 0.88 +3.2
994,700 + ABZR87_RS20535 0.88 -2.2
994,865 + +0.5
994,866 - -0.5
994,866 - -0.9
994,866 - -1.1
994,866 - +0.4
994,866 - -1.4
994,887 - -1.5
994,973 + +1.0
994,999 + +1.3
995,000 - -0.4
995,000 - -1.8
995,033 + -0.3
995,034 - +0.5
995,060 - -0.3
995,074 + +0.4
995,075 - +0.6
995,083 + +0.2
995,083 + +0.6
995,084 - -0.3
995,314 + ABZR87_RS20540 0.35 -0.3
995,314 + ABZR87_RS20540 0.35 -0.1
995,314 + ABZR87_RS20540 0.35 -0.8
995,315 - ABZR87_RS20540 0.35 +1.2
995,315 - ABZR87_RS20540 0.35 +0.2
995,315 - ABZR87_RS20540 0.35 +0.3
995,315 - ABZR87_RS20540 0.35 +1.8
995,315 - ABZR87_RS20540 0.35 -0.2
995,315 - ABZR87_RS20540 0.35 +0.5
995,380 + ABZR87_RS20540 0.42 -1.0
995,380 + ABZR87_RS20540 0.42 +0.6
995,380 + ABZR87_RS20540 0.42 -0.8
995,380 + ABZR87_RS20540 0.42 -0.6
995,704 + ABZR87_RS20540 0.77 -0.1
995,704 + ABZR87_RS20540 0.77 +0.5
995,879 + -0.2
995,879 + +0.2
995,880 - -0.3
995,880 - -0.9
995,935 + -0.5
995,936 - -0.2
995,970 + -1.3
995,980 - -0.6
996,183 + ABZR87_RS20545 0.17 +0.5
996,183 + ABZR87_RS20545 0.17 -0.7
996,183 + ABZR87_RS20545 0.17 -0.7
996,183 + ABZR87_RS20545 0.17 +1.2
996,184 - ABZR87_RS20545 0.17 -0.4
996,184 - ABZR87_RS20545 0.17 +0.4
996,184 - ABZR87_RS20545 0.17 -1.2
996,337 - ABZR87_RS20545 0.35 +0.7
996,337 - ABZR87_RS20545 0.35 +0.2
996,337 - ABZR87_RS20545 0.35 +0.4
996,337 - ABZR87_RS20545 0.35 -0.1
996,348 + ABZR87_RS20545 0.37 -0.0
996,348 + ABZR87_RS20545 0.37 -0.7
996,348 + ABZR87_RS20545 0.37 -1.6
996,348 + ABZR87_RS20545 0.37 +3.1
996,348 + ABZR87_RS20545 0.37 +1.0
996,349 - ABZR87_RS20545 0.37 +0.7
996,349 - ABZR87_RS20545 0.37 +0.4
996,349 - ABZR87_RS20545 0.37 +0.2
996,349 - ABZR87_RS20545 0.37 +0.2
996,349 - ABZR87_RS20545 0.37 -0.4
996,349 - ABZR87_RS20545 0.37 -0.0
996,349 - ABZR87_RS20545 0.37 +0.2
996,349 - ABZR87_RS20545 0.37 +0.1
996,449 + ABZR87_RS20545 0.49 +0.1
996,449 + ABZR87_RS20545 0.49 -0.0
996,522 + ABZR87_RS20545 0.58 +0.1
996,522 + ABZR87_RS20545 0.58 +0.6
996,522 + ABZR87_RS20545 0.58 -0.0
996,522 + ABZR87_RS20545 0.58 -0.4
996,523 - ABZR87_RS20545 0.58 +0.2
996,550 + ABZR87_RS20545 0.61 -1.4
996,551 - ABZR87_RS20545 0.61 -1.1
996,558 + ABZR87_RS20545 0.62 +1.0
996,559 - ABZR87_RS20545 0.62 -0.4
996,591 + ABZR87_RS20545 0.66 +0.0
996,680 + ABZR87_RS20545 0.76 +0.3
996,680 + ABZR87_RS20545 0.76 +1.4
996,681 - ABZR87_RS20545 0.77 -0.0
996,704 + ABZR87_RS20545 0.79 -1.3
996,704 + ABZR87_RS20545 0.79 -1.2
996,704 + ABZR87_RS20545 0.79 +1.4
996,704 + ABZR87_RS20545 0.79 +0.2
996,704 + ABZR87_RS20545 0.79 +0.2
996,704 + ABZR87_RS20545 0.79 +0.7
996,704 + ABZR87_RS20545 0.79 -2.2
996,704 + ABZR87_RS20545 0.79 +0.1
996,704 + ABZR87_RS20545 0.79 +0.4
996,705 - ABZR87_RS20545 0.79 -0.1
996,705 - ABZR87_RS20545 0.79 -0.5
996,705 - ABZR87_RS20545 0.79 +1.2
996,829 - -1.4
996,829 - +0.6
996,829 - +0.5
996,829 - +1.4
996,874 - +1.3
996,897 + -0.7
996,897 + -0.1
996,897 + -0.6
996,898 - -0.4
996,898 - +2.8
996,898 - -0.7

Or see this region's nucleotide sequence