Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18825 and ABZR87_RS18830 are separated by 7 nucleotides ABZR87_RS18830 and ABZR87_RS18835 are separated by 86 nucleotides ABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotides
ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022
_RS18825
ABZR87_RS18830: ABZR87_RS18830 - NIPSNAP family protein, at 578,030 to 578,335
_RS18830
ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453
_RS18835
ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838
_RS18840
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.928 kb on + strand at 577.928 kb on + strand at 577.928 kb on + strand at 578.039 kb on + strand at 578.040 kb on - strand at 578.040 kb on - strand at 578.065 kb on - strand, within ABZR87_RS18830 at 578.094 kb on + strand, within ABZR87_RS18830 at 578.142 kb on + strand, within ABZR87_RS18830 at 578.142 kb on + strand, within ABZR87_RS18830 at 578.151 kb on + strand, within ABZR87_RS18830 at 578.220 kb on + strand, within ABZR87_RS18830 at 578.220 kb on + strand, within ABZR87_RS18830 at 578.221 kb on - strand, within ABZR87_RS18830 at 578.275 kb on - strand, within ABZR87_RS18830 at 578.275 kb on - strand, within ABZR87_RS18830 at 578.313 kb on + strand at 578.313 kb on + strand at 578.314 kb on - strand at 578.314 kb on - strand at 578.369 kb on + strand at 578.370 kb on - strand at 578.370 kb on - strand at 578.421 kb on - strand at 578.426 kb on + strand at 578.426 kb on + strand at 578.427 kb on - strand at 578.427 kb on - strand at 578.427 kb on - strand at 578.427 kb on - strand at 578.427 kb on - strand at 578.429 kb on + strand at 578.465 kb on + strand at 578.466 kb on - strand at 578.466 kb on - strand at 578.471 kb on + strand at 578.471 kb on + strand at 578.472 kb on - strand at 578.472 kb on - strand at 578.472 kb on - strand at 578.481 kb on - strand at 578.600 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.022 kb on + strand, within ABZR87_RS18835 at 579.023 kb on - strand, within ABZR87_RS18835 at 579.023 kb on - strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.179 kb on + strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.350 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.369 kb on - strand at 579.565 kb on + strand at 579.565 kb on + strand at 579.565 kb on + strand at 579.566 kb on - strand at 579.566 kb on - strand at 579.583 kb on + strand at 579.583 kb on + strand at 579.604 kb on + strand, within ABZR87_RS18840 at 579.604 kb on + strand, within ABZR87_RS18840 at 579.604 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.613 kb on - strand, within ABZR87_RS18840 at 579.616 kb on + strand, within ABZR87_RS18840 at 579.617 kb on - strand, within ABZR87_RS18840 at 579.688 kb on + strand, within ABZR87_RS18840 at 579.689 kb on - strand, within ABZR87_RS18840 at 579.689 kb on - strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.961 kb on + strand, within ABZR87_RS18840 at 579.961 kb on + strand, within ABZR87_RS18840 at 580.229 kb on - strand, within ABZR87_RS18840 at 580.367 kb on - strand, within ABZR87_RS18840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 577,928 + -0.2 577,928 + -1.9 577,928 + +0.6 578,039 + +0.4 578,040 - -0.5 578,040 - +0.2 578,065 - ABZR87_RS18830 0.11 +2.1 578,094 + ABZR87_RS18830 0.21 -1.2 578,142 + ABZR87_RS18830 0.37 +0.2 578,142 + ABZR87_RS18830 0.37 -1.7 578,151 + ABZR87_RS18830 0.40 -1.3 578,220 + ABZR87_RS18830 0.62 +0.7 578,220 + ABZR87_RS18830 0.62 +0.7 578,221 - ABZR87_RS18830 0.62 -1.0 578,275 - ABZR87_RS18830 0.80 +0.5 578,275 - ABZR87_RS18830 0.80 -0.2 578,313 + -0.1 578,313 + +0.2 578,314 - -0.1 578,314 - -0.6 578,369 + -0.7 578,370 - -0.1 578,370 - +0.6 578,421 - +1.5 578,426 + -1.8 578,426 + -1.9 578,427 - -0.4 578,427 - +0.5 578,427 - -0.5 578,427 - -0.5 578,427 - -0.7 578,429 + +0.6 578,465 + +0.5 578,466 - -0.3 578,466 - -0.7 578,471 + +2.7 578,471 + -1.1 578,472 - +0.2 578,472 - +1.7 578,472 - +0.2 578,481 - -1.3 578,600 + ABZR87_RS18835 0.17 -0.1 579,020 + ABZR87_RS18835 0.58 -1.1 579,020 + ABZR87_RS18835 0.58 -0.2 579,020 + ABZR87_RS18835 0.58 +1.0 579,020 + ABZR87_RS18835 0.58 -0.8 579,020 + ABZR87_RS18835 0.58 +0.9 579,020 + ABZR87_RS18835 0.58 +0.8 579,020 + ABZR87_RS18835 0.58 +0.0 579,020 + ABZR87_RS18835 0.58 -0.1 579,020 + ABZR87_RS18835 0.58 -1.6 579,021 - ABZR87_RS18835 0.58 +0.7 579,021 - ABZR87_RS18835 0.58 -0.1 579,021 - ABZR87_RS18835 0.58 +0.7 579,021 - ABZR87_RS18835 0.58 -0.3 579,021 - ABZR87_RS18835 0.58 +0.6 579,021 - ABZR87_RS18835 0.58 -0.4 579,021 - ABZR87_RS18835 0.58 -0.6 579,021 - ABZR87_RS18835 0.58 +0.0 579,021 - ABZR87_RS18835 0.58 -1.4 579,022 + ABZR87_RS18835 0.58 +0.4 579,023 - ABZR87_RS18835 0.58 -0.7 579,023 - ABZR87_RS18835 0.58 +1.3 579,071 + ABZR87_RS18835 0.63 -0.8 579,071 + ABZR87_RS18835 0.63 -0.4 579,071 + ABZR87_RS18835 0.63 +0.6 579,072 - ABZR87_RS18835 0.63 +0.8 579,072 - ABZR87_RS18835 0.63 +0.6 579,072 - ABZR87_RS18835 0.63 -1.2 579,072 - ABZR87_RS18835 0.63 -0.4 579,072 - ABZR87_RS18835 0.63 +0.9 579,179 + ABZR87_RS18835 0.73 +0.1 579,180 - ABZR87_RS18835 0.73 +0.4 579,180 - ABZR87_RS18835 0.73 -0.6 579,180 - ABZR87_RS18835 0.73 -1.1 579,350 + -1.7 579,368 + -0.6 579,368 + +0.7 579,368 + +0.0 579,368 + +1.2 579,368 + -0.9 579,369 - -0.1 579,565 + +0.8 579,565 + +1.0 579,565 + -0.2 579,566 - +1.7 579,566 - -0.3 579,583 + +1.5 579,583 + +0.6 579,604 + ABZR87_RS18840 0.11 +0.2 579,604 + ABZR87_RS18840 0.11 +0.9 579,604 + ABZR87_RS18840 0.11 -0.2 579,612 + ABZR87_RS18840 0.12 +0.8 579,612 + ABZR87_RS18840 0.12 -0.9 579,612 + ABZR87_RS18840 0.12 +0.7 579,612 + ABZR87_RS18840 0.12 -0.3 579,613 - ABZR87_RS18840 0.12 +1.8 579,616 + ABZR87_RS18840 0.12 -1.4 579,617 - ABZR87_RS18840 0.12 -0.8 579,688 + ABZR87_RS18840 0.17 +0.1 579,689 - ABZR87_RS18840 0.17 -0.2 579,689 - ABZR87_RS18840 0.17 -2.3 579,724 + ABZR87_RS18840 0.20 +2.0 579,724 + ABZR87_RS18840 0.20 +0.3 579,724 + ABZR87_RS18840 0.20 +0.7 579,724 + ABZR87_RS18840 0.20 +1.5 579,724 + ABZR87_RS18840 0.20 +2.0 579,725 - ABZR87_RS18840 0.20 +1.1 579,725 - ABZR87_RS18840 0.20 +0.8 579,725 - ABZR87_RS18840 0.20 -1.0 579,725 - ABZR87_RS18840 0.20 +1.1 579,961 + ABZR87_RS18840 0.37 +0.0 579,961 + ABZR87_RS18840 0.37 +1.3 580,229 - ABZR87_RS18840 0.56 +1.1 580,367 - ABZR87_RS18840 0.66 +1.6
Or see this region's nucleotide sequence