Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotides ABZR87_RS18785 and ABZR87_RS18790 are separated by 127 nucleotides ABZR87_RS18790 and ABZR87_RS18795 are separated by 90 nucleotides
ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861
_RS18780
ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632
_RS18785
ABZR87_RS18790: ABZR87_RS18790 - LysR family transcriptional regulator, at 567,760 to 568,707
_RS18790
ABZR87_RS18795: ABZR87_RS18795 - MDR family MFS transporter, at 568,798 to 570,390
_RS18795
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 566.859 kb on + strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.860 kb on - strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.108 kb on + strand, within ABZR87_RS18785 at 567.108 kb on + strand, within ABZR87_RS18785 at 567.109 kb on - strand, within ABZR87_RS18785 at 567.158 kb on - strand, within ABZR87_RS18785 at 567.158 kb on - strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.203 kb on + strand, within ABZR87_RS18785 at 567.203 kb on + strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.271 kb on + strand, within ABZR87_RS18785 at 567.271 kb on + strand, within ABZR87_RS18785 at 567.272 kb on - strand, within ABZR87_RS18785 at 567.272 kb on - strand, within ABZR87_RS18785 at 567.272 kb on - strand, within ABZR87_RS18785 at 567.343 kb on + strand, within ABZR87_RS18785 at 567.343 kb on + strand, within ABZR87_RS18785 at 567.344 kb on - strand, within ABZR87_RS18785 at 567.344 kb on - strand, within ABZR87_RS18785 at 567.670 kb on + strand at 567.671 kb on - strand at 567.671 kb on - strand at 567.722 kb on - strand at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.955 kb on + strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.956 kb on - strand, within ABZR87_RS18790 at 567.957 kb on + strand, within ABZR87_RS18790 at 567.957 kb on + strand, within ABZR87_RS18790 at 567.957 kb on + strand, within ABZR87_RS18790 at 567.957 kb on + strand, within ABZR87_RS18790 at 567.957 kb on + strand, within ABZR87_RS18790 at 567.958 kb on - strand, within ABZR87_RS18790 at 567.958 kb on - strand, within ABZR87_RS18790 at 567.958 kb on - strand, within ABZR87_RS18790 at 568.175 kb on - strand, within ABZR87_RS18790 at 568.408 kb on + strand, within ABZR87_RS18790 at 568.408 kb on + strand, within ABZR87_RS18790 at 568.408 kb on + strand, within ABZR87_RS18790 at 568.408 kb on + strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.409 kb on - strand, within ABZR87_RS18790 at 568.438 kb on + strand, within ABZR87_RS18790 at 568.438 kb on + strand, within ABZR87_RS18790 at 568.439 kb on - strand, within ABZR87_RS18790 at 568.439 kb on - strand, within ABZR87_RS18790 at 568.439 kb on - strand, within ABZR87_RS18790 at 568.439 kb on - strand, within ABZR87_RS18790 at 568.546 kb on + strand, within ABZR87_RS18790 at 568.546 kb on + strand, within ABZR87_RS18790 at 568.546 kb on + strand, within ABZR87_RS18790 at 568.547 kb on - strand, within ABZR87_RS18790 at 568.547 kb on - strand, within ABZR87_RS18790 at 568.578 kb on - strand, within ABZR87_RS18790 at 568.675 kb on + strand at 568.733 kb on + strand at 568.733 kb on + strand at 568.733 kb on + strand at 568.734 kb on - strand at 569.050 kb on + strand, within ABZR87_RS18795 at 569.051 kb on - strand, within ABZR87_RS18795 at 569.083 kb on + strand, within ABZR87_RS18795 at 569.083 kb on + strand, within ABZR87_RS18795 at 569.083 kb on + strand, within ABZR87_RS18795 at 569.083 kb on + strand, within ABZR87_RS18795 at 569.084 kb on - strand, within ABZR87_RS18795 at 569.084 kb on - strand, within ABZR87_RS18795 at 569.084 kb on - strand, within ABZR87_RS18795 at 569.084 kb on - strand, within ABZR87_RS18795 at 569.084 kb on - strand, within ABZR87_RS18795 at 569.084 kb on - strand, within ABZR87_RS18795 at 569.104 kb on + strand, within ABZR87_RS18795 at 569.104 kb on + strand, within ABZR87_RS18795 at 569.294 kb on - strand, within ABZR87_RS18795 at 569.302 kb on + strand, within ABZR87_RS18795 at 569.303 kb on - strand, within ABZR87_RS18795 at 569.303 kb on - strand, within ABZR87_RS18795 at 569.303 kb on - strand, within ABZR87_RS18795 at 569.303 kb on - strand, within ABZR87_RS18795 at 569.303 kb on - strand, within ABZR87_RS18795 at 569.356 kb on + strand, within ABZR87_RS18795 at 569.368 kb on + strand, within ABZR87_RS18795 at 569.368 kb on + strand, within ABZR87_RS18795 at 569.368 kb on + strand, within ABZR87_RS18795 at 569.368 kb on + strand, within ABZR87_RS18795 at 569.368 kb on + strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.369 kb on - strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.582 kb on + strand, within ABZR87_RS18795 at 569.583 kb on - strand, within ABZR87_RS18795 at 569.583 kb on - strand, within ABZR87_RS18795 at 569.583 kb on - strand, within ABZR87_RS18795 at 569.583 kb on - strand, within ABZR87_RS18795 at 569.588 kb on + strand, within ABZR87_RS18795 at 569.589 kb on - strand, within ABZR87_RS18795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 566,859 + -0.4 566,859 + +0.9 566,859 + +1.0 566,860 - -0.1 567,027 + -2.3 567,027 + -1.4 567,027 + -0.6 567,027 + +1.0 567,027 + -2.0 567,027 + +0.1 567,028 - +1.7 567,028 - -0.2 567,028 - -0.2 567,108 + ABZR87_RS18785 0.16 +0.8 567,108 + ABZR87_RS18785 0.16 -0.3 567,109 - ABZR87_RS18785 0.16 -2.6 567,158 - ABZR87_RS18785 0.24 +0.1 567,158 - ABZR87_RS18785 0.24 +0.6 567,199 + ABZR87_RS18785 0.31 -0.4 567,199 + ABZR87_RS18785 0.31 -0.9 567,199 + ABZR87_RS18785 0.31 +0.2 567,199 + ABZR87_RS18785 0.31 +0.2 567,199 + ABZR87_RS18785 0.31 -0.1 567,199 + ABZR87_RS18785 0.31 -0.4 567,199 + ABZR87_RS18785 0.31 +0.2 567,199 + ABZR87_RS18785 0.31 +3.6 567,199 + ABZR87_RS18785 0.31 +0.1 567,200 - ABZR87_RS18785 0.31 +0.9 567,200 - ABZR87_RS18785 0.31 +0.9 567,200 - ABZR87_RS18785 0.31 +0.3 567,200 - ABZR87_RS18785 0.31 -0.9 567,200 - ABZR87_RS18785 0.31 -0.0 567,200 - ABZR87_RS18785 0.31 -0.5 567,203 + ABZR87_RS18785 0.31 -0.6 567,203 + ABZR87_RS18785 0.31 -0.1 567,204 - ABZR87_RS18785 0.32 +0.5 567,204 - ABZR87_RS18785 0.32 -0.8 567,204 - ABZR87_RS18785 0.32 -1.3 567,271 + ABZR87_RS18785 0.42 +0.3 567,271 + ABZR87_RS18785 0.42 -0.4 567,272 - ABZR87_RS18785 0.42 -1.1 567,272 - ABZR87_RS18785 0.42 -1.3 567,272 - ABZR87_RS18785 0.42 +5.3 567,343 + ABZR87_RS18785 0.54 -0.7 567,343 + ABZR87_RS18785 0.54 -0.1 567,344 - ABZR87_RS18785 0.54 -0.4 567,344 - ABZR87_RS18785 0.54 -0.1 567,670 + +0.2 567,671 - +2.2 567,671 - -2.2 567,722 - +0.3 567,955 + ABZR87_RS18790 0.21 -0.4 567,955 + ABZR87_RS18790 0.21 -0.9 567,955 + ABZR87_RS18790 0.21 +0.6 567,955 + ABZR87_RS18790 0.21 -1.2 567,955 + ABZR87_RS18790 0.21 +0.9 567,955 + ABZR87_RS18790 0.21 +1.0 567,955 + ABZR87_RS18790 0.21 +0.2 567,955 + ABZR87_RS18790 0.21 -0.0 567,955 + ABZR87_RS18790 0.21 -0.1 567,955 + ABZR87_RS18790 0.21 -1.9 567,956 - ABZR87_RS18790 0.21 +1.0 567,956 - ABZR87_RS18790 0.21 +2.1 567,956 - ABZR87_RS18790 0.21 -0.4 567,956 - ABZR87_RS18790 0.21 -0.3 567,956 - ABZR87_RS18790 0.21 +0.4 567,956 - ABZR87_RS18790 0.21 +2.7 567,956 - ABZR87_RS18790 0.21 -1.1 567,957 + ABZR87_RS18790 0.21 -0.7 567,957 + ABZR87_RS18790 0.21 -0.3 567,957 + ABZR87_RS18790 0.21 +0.1 567,957 + ABZR87_RS18790 0.21 -1.0 567,957 + ABZR87_RS18790 0.21 -1.8 567,958 - ABZR87_RS18790 0.21 -0.7 567,958 - ABZR87_RS18790 0.21 -0.2 567,958 - ABZR87_RS18790 0.21 -0.1 568,175 - ABZR87_RS18790 0.44 +0.4 568,408 + ABZR87_RS18790 0.68 -0.3 568,408 + ABZR87_RS18790 0.68 +2.7 568,408 + ABZR87_RS18790 0.68 -0.1 568,408 + ABZR87_RS18790 0.68 -0.6 568,409 - ABZR87_RS18790 0.68 +0.5 568,409 - ABZR87_RS18790 0.68 +1.0 568,409 - ABZR87_RS18790 0.68 -0.2 568,409 - ABZR87_RS18790 0.68 -0.1 568,409 - ABZR87_RS18790 0.68 -1.7 568,409 - ABZR87_RS18790 0.68 +1.2 568,409 - ABZR87_RS18790 0.68 +0.7 568,438 + ABZR87_RS18790 0.72 +0.4 568,438 + ABZR87_RS18790 0.72 -1.4 568,439 - ABZR87_RS18790 0.72 +0.1 568,439 - ABZR87_RS18790 0.72 +0.5 568,439 - ABZR87_RS18790 0.72 -0.9 568,439 - ABZR87_RS18790 0.72 -0.1 568,546 + ABZR87_RS18790 0.83 +0.8 568,546 + ABZR87_RS18790 0.83 +1.0 568,546 + ABZR87_RS18790 0.83 -0.7 568,547 - ABZR87_RS18790 0.83 +0.1 568,547 - ABZR87_RS18790 0.83 +0.3 568,578 - ABZR87_RS18790 0.86 +0.1 568,675 + -1.5 568,733 + +0.4 568,733 + -0.2 568,733 + -0.4 568,734 - -0.3 569,050 + ABZR87_RS18795 0.16 +0.9 569,051 - ABZR87_RS18795 0.16 -0.4 569,083 + ABZR87_RS18795 0.18 +0.7 569,083 + ABZR87_RS18795 0.18 -0.5 569,083 + ABZR87_RS18795 0.18 +2.0 569,083 + ABZR87_RS18795 0.18 -0.4 569,084 - ABZR87_RS18795 0.18 -0.3 569,084 - ABZR87_RS18795 0.18 -0.1 569,084 - ABZR87_RS18795 0.18 -0.1 569,084 - ABZR87_RS18795 0.18 -0.9 569,084 - ABZR87_RS18795 0.18 +2.2 569,084 - ABZR87_RS18795 0.18 +0.4 569,104 + ABZR87_RS18795 0.19 +0.1 569,104 + ABZR87_RS18795 0.19 -1.3 569,294 - ABZR87_RS18795 0.31 +0.1 569,302 + ABZR87_RS18795 0.32 -0.5 569,303 - ABZR87_RS18795 0.32 +1.0 569,303 - ABZR87_RS18795 0.32 -0.0 569,303 - ABZR87_RS18795 0.32 +0.6 569,303 - ABZR87_RS18795 0.32 -0.5 569,303 - ABZR87_RS18795 0.32 +0.7 569,356 + ABZR87_RS18795 0.35 +0.4 569,368 + ABZR87_RS18795 0.36 +0.5 569,368 + ABZR87_RS18795 0.36 +0.2 569,368 + ABZR87_RS18795 0.36 +0.9 569,368 + ABZR87_RS18795 0.36 -1.0 569,368 + ABZR87_RS18795 0.36 +1.5 569,369 - ABZR87_RS18795 0.36 -0.5 569,369 - ABZR87_RS18795 0.36 -1.8 569,369 - ABZR87_RS18795 0.36 -0.1 569,369 - ABZR87_RS18795 0.36 -1.4 569,369 - ABZR87_RS18795 0.36 +0.9 569,369 - ABZR87_RS18795 0.36 -0.3 569,369 - ABZR87_RS18795 0.36 -0.4 569,369 - ABZR87_RS18795 0.36 -1.3 569,369 - ABZR87_RS18795 0.36 -0.5 569,369 - ABZR87_RS18795 0.36 +0.4 569,369 - ABZR87_RS18795 0.36 -0.2 569,369 - ABZR87_RS18795 0.36 +0.1 569,582 + ABZR87_RS18795 0.49 -0.0 569,582 + ABZR87_RS18795 0.49 +0.1 569,582 + ABZR87_RS18795 0.49 -0.3 569,582 + ABZR87_RS18795 0.49 +0.6 569,582 + ABZR87_RS18795 0.49 -1.0 569,582 + ABZR87_RS18795 0.49 +1.5 569,582 + ABZR87_RS18795 0.49 +1.4 569,582 + ABZR87_RS18795 0.49 +2.2 569,582 + ABZR87_RS18795 0.49 -0.0 569,583 - ABZR87_RS18795 0.49 +0.9 569,583 - ABZR87_RS18795 0.49 +0.2 569,583 - ABZR87_RS18795 0.49 +1.5 569,583 - ABZR87_RS18795 0.49 +1.9 569,588 + ABZR87_RS18795 0.50 +0.4 569,589 - ABZR87_RS18795 0.50 -1.2
Or see this region's nucleotide sequence