Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18195 and ABZR87_RS18200 are separated by 111 nucleotides ABZR87_RS18200 and ABZR87_RS18205 are separated by 347 nucleotides
ABZR87_RS18195: ABZR87_RS18195 - hypothetical protein, at 443,037 to 452,582
_RS18195
ABZR87_RS18200: ABZR87_RS18200 - hypothetical protein, at 452,694 to 453,761
_RS18200
ABZR87_RS18205: ABZR87_RS18205 - nucleobase:cation symporter-2 family protein, at 454,109 to 455,536
_RS18205
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 451.725 kb on + strand at 451.738 kb on + strand at 451.739 kb on - strand at 451.739 kb on - strand at 451.754 kb on + strand at 451.791 kb on + strand at 451.791 kb on + strand at 451.791 kb on + strand at 451.812 kb on - strand at 451.883 kb on + strand at 451.883 kb on + strand at 451.926 kb on + strand at 451.926 kb on + strand at 451.927 kb on - strand at 451.927 kb on - strand at 451.927 kb on - strand at 451.927 kb on - strand at 451.968 kb on + strand at 451.968 kb on + strand at 451.969 kb on - strand at 451.969 kb on - strand at 451.969 kb on - strand at 451.969 kb on - strand at 451.969 kb on - strand at 451.970 kb on + strand at 451.970 kb on + strand at 451.970 kb on + strand at 451.971 kb on - strand at 451.971 kb on - strand at 451.971 kb on - strand at 452.033 kb on - strand at 452.034 kb on + strand at 452.034 kb on + strand at 452.034 kb on + strand at 452.035 kb on - strand at 452.035 kb on - strand at 452.173 kb on + strand at 452.173 kb on + strand at 452.174 kb on - strand at 452.195 kb on + strand at 452.195 kb on + strand at 452.196 kb on - strand at 452.196 kb on - strand at 452.196 kb on - strand at 452.196 kb on - strand at 452.196 kb on - strand at 452.286 kb on + strand at 452.286 kb on + strand at 452.286 kb on + strand at 452.287 kb on - strand at 452.409 kb on + strand at 452.444 kb on + strand at 452.444 kb on + strand at 452.445 kb on - strand at 452.555 kb on + strand at 452.580 kb on + strand at 452.580 kb on + strand at 452.580 kb on + strand at 452.692 kb on + strand at 452.692 kb on + strand at 452.693 kb on - strand at 452.727 kb on - strand at 452.752 kb on + strand at 452.753 kb on - strand at 452.753 kb on - strand at 452.753 kb on - strand at 452.921 kb on + strand, within ABZR87_RS18200 at 452.922 kb on - strand, within ABZR87_RS18200 at 452.922 kb on - strand, within ABZR87_RS18200 at 452.922 kb on - strand, within ABZR87_RS18200 at 453.029 kb on + strand, within ABZR87_RS18200 at 453.029 kb on + strand, within ABZR87_RS18200 at 453.030 kb on - strand, within ABZR87_RS18200 at 453.178 kb on + strand, within ABZR87_RS18200 at 453.178 kb on + strand, within ABZR87_RS18200 at 453.179 kb on - strand, within ABZR87_RS18200 at 453.244 kb on + strand, within ABZR87_RS18200 at 453.244 kb on + strand, within ABZR87_RS18200 at 453.244 kb on + strand, within ABZR87_RS18200 at 453.244 kb on + strand, within ABZR87_RS18200 at 453.244 kb on + strand, within ABZR87_RS18200 at 453.244 kb on + strand, within ABZR87_RS18200 at 453.245 kb on - strand, within ABZR87_RS18200 at 453.268 kb on + strand, within ABZR87_RS18200 at 453.269 kb on - strand, within ABZR87_RS18200 at 453.373 kb on + strand, within ABZR87_RS18200 at 453.373 kb on + strand, within ABZR87_RS18200 at 453.374 kb on - strand, within ABZR87_RS18200 at 453.374 kb on - strand, within ABZR87_RS18200 at 453.374 kb on - strand, within ABZR87_RS18200 at 453.699 kb on - strand at 453.781 kb on + strand at 453.781 kb on + strand at 453.781 kb on + strand at 453.781 kb on + strand at 453.796 kb on + strand at 453.797 kb on - strand at 453.924 kb on - strand at 454.238 kb on + strand at 454.238 kb on + strand at 454.238 kb on + strand at 454.238 kb on + strand at 454.238 kb on + strand at 454.238 kb on + strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.239 kb on - strand at 454.307 kb on + strand, within ABZR87_RS18205 at 454.307 kb on + strand, within ABZR87_RS18205 at 454.307 kb on + strand, within ABZR87_RS18205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 451,725 + -0.4 451,738 + -0.4 451,739 - -1.1 451,739 - -1.5 451,754 + -0.4 451,791 + +0.0 451,791 + -1.6 451,791 + -0.4 451,812 - -0.0 451,883 + +0.1 451,883 + -1.8 451,926 + +0.2 451,926 + +0.1 451,927 - -0.1 451,927 - -0.1 451,927 - +0.1 451,927 - +0.2 451,968 + +0.2 451,968 + -0.4 451,969 - -2.3 451,969 - +0.0 451,969 - +0.3 451,969 - +0.8 451,969 - -1.2 451,970 + +1.0 451,970 + +0.4 451,970 + -0.5 451,971 - +0.9 451,971 - -0.6 451,971 - -0.5 452,033 - -0.3 452,034 + -0.9 452,034 + -0.6 452,034 + +0.8 452,035 - -0.5 452,035 - -2.8 452,173 + -2.6 452,173 + +0.8 452,174 - +0.1 452,195 + +0.8 452,195 + +0.3 452,196 - +1.4 452,196 - -1.9 452,196 - +7.0 452,196 - +0.5 452,196 - +0.2 452,286 + -0.4 452,286 + -0.2 452,286 + -1.3 452,287 - +0.3 452,409 + -0.1 452,444 + +0.5 452,444 + -1.7 452,445 - -0.1 452,555 + +0.4 452,580 + +2.0 452,580 + +0.5 452,580 + -0.3 452,692 + -0.0 452,692 + -0.2 452,693 - +0.1 452,727 - -0.4 452,752 + -1.8 452,753 - -0.3 452,753 - +0.4 452,753 - -1.0 452,921 + ABZR87_RS18200 0.21 -0.8 452,922 - ABZR87_RS18200 0.21 -0.7 452,922 - ABZR87_RS18200 0.21 -0.2 452,922 - ABZR87_RS18200 0.21 -1.6 453,029 + ABZR87_RS18200 0.31 -1.3 453,029 + ABZR87_RS18200 0.31 -0.4 453,030 - ABZR87_RS18200 0.31 -0.5 453,178 + ABZR87_RS18200 0.45 +0.1 453,178 + ABZR87_RS18200 0.45 +1.8 453,179 - ABZR87_RS18200 0.45 -0.6 453,244 + ABZR87_RS18200 0.51 +0.3 453,244 + ABZR87_RS18200 0.51 +4.0 453,244 + ABZR87_RS18200 0.51 -0.3 453,244 + ABZR87_RS18200 0.51 +0.9 453,244 + ABZR87_RS18200 0.51 +1.0 453,244 + ABZR87_RS18200 0.51 -0.8 453,245 - ABZR87_RS18200 0.52 -1.4 453,268 + ABZR87_RS18200 0.54 +0.0 453,269 - ABZR87_RS18200 0.54 -1.2 453,373 + ABZR87_RS18200 0.64 +0.7 453,373 + ABZR87_RS18200 0.64 -0.3 453,374 - ABZR87_RS18200 0.64 +0.3 453,374 - ABZR87_RS18200 0.64 +1.8 453,374 - ABZR87_RS18200 0.64 -0.4 453,699 - +0.3 453,781 + +2.7 453,781 + -1.8 453,781 + -0.3 453,781 + +0.8 453,796 + +0.0 453,797 - +0.1 453,924 - -0.7 454,238 + -0.2 454,238 + -2.0 454,238 + -0.1 454,238 + +1.3 454,238 + +0.3 454,238 + +0.5 454,239 - -2.2 454,239 - +0.2 454,239 - -2.4 454,239 - +1.3 454,239 - +0.1 454,239 - -0.4 454,239 - -0.5 454,239 - +0.9 454,239 - -1.5 454,239 - -0.6 454,239 - -0.7 454,239 - -1.2 454,239 - -0.2 454,239 - -1.8 454,307 + ABZR87_RS18205 0.14 -0.3 454,307 + ABZR87_RS18205 0.14 -0.1 454,307 + ABZR87_RS18205 0.14 -0.2
Or see this region's nucleotide sequence