Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17960

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17950 and ABZR87_RS17955 are separated by 25 nucleotidesABZR87_RS17955 and ABZR87_RS17960 are separated by 18 nucleotidesABZR87_RS17960 and ABZR87_RS17965 are separated by 78 nucleotidesABZR87_RS17965 and ABZR87_RS17970 are separated by 124 nucleotides ABZR87_RS17950: ABZR87_RS17950 - flagellar motor protein MotB, at 381,422 to 382,369 _RS17950 ABZR87_RS17955: ABZR87_RS17955 - response regulator, at 382,395 to 382,808 _RS17955 ABZR87_RS17960: ABZR87_RS17960 - chemotaxis protein CheA, at 382,827 to 385,001 _RS17960 ABZR87_RS17965: ABZR87_RS17965 - chemotaxis protein CheW, at 385,080 to 385,571 _RS17965 ABZR87_RS17970: ABZR87_RS17970 - methyl-accepting chemotaxis protein, at 385,696 to 387,540 _RS17970 Position (kb) 382 383 384 385 386Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 381.947 kb on + strand, within ABZR87_RS17950at 381.947 kb on + strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.949 kb on + strand, within ABZR87_RS17950at 382.037 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.191 kb on - strand, within ABZR87_RS17950at 382.191 kb on - strand, within ABZR87_RS17950at 382.191 kb on - strand, within ABZR87_RS17950at 382.367 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.827 kb on - strandat 383.140 kb on - strand, within ABZR87_RS17960at 383.157 kb on - strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.179 kb on - strand, within ABZR87_RS17960at 383.179 kb on - strand, within ABZR87_RS17960at 383.179 kb on - strand, within ABZR87_RS17960at 383.952 kb on + strand, within ABZR87_RS17960at 383.952 kb on + strand, within ABZR87_RS17960at 383.952 kb on + strand, within ABZR87_RS17960at 383.952 kb on + strand, within ABZR87_RS17960at 383.952 kb on + strand, within ABZR87_RS17960at 383.953 kb on - strand, within ABZR87_RS17960at 384.084 kb on - strand, within ABZR87_RS17960at 384.387 kb on + strand, within ABZR87_RS17960at 384.423 kb on + strand, within ABZR87_RS17960at 384.424 kb on - strand, within ABZR87_RS17960at 384.634 kb on - strand, within ABZR87_RS17960at 384.634 kb on - strand, within ABZR87_RS17960at 384.634 kb on - strand, within ABZR87_RS17960at 384.654 kb on + strand, within ABZR87_RS17960at 384.655 kb on - strand, within ABZR87_RS17960at 384.655 kb on - strand, within ABZR87_RS17960at 384.655 kb on - strand, within ABZR87_RS17960at 384.655 kb on - strand, within ABZR87_RS17960at 384.801 kb on + strandat 384.801 kb on + strandat 384.802 kb on - strandat 384.802 kb on - strandat 384.802 kb on - strandat 384.872 kb on - strandat 384.999 kb on + strandat 385.128 kb on + strandat 385.128 kb on + strandat 385.128 kb on + strandat 385.129 kb on - strandat 385.129 kb on - strandat 385.159 kb on - strand, within ABZR87_RS17965at 385.197 kb on + strand, within ABZR87_RS17965at 385.197 kb on + strand, within ABZR87_RS17965at 385.197 kb on + strand, within ABZR87_RS17965at 385.327 kb on - strand, within ABZR87_RS17965at 385.327 kb on - strand, within ABZR87_RS17965at 385.327 kb on - strand, within ABZR87_RS17965at 385.327 kb on - strand, within ABZR87_RS17965at 385.327 kb on - strand, within ABZR87_RS17965at 385.461 kb on + strand, within ABZR87_RS17965at 385.617 kb on + strandat 385.617 kb on + strandat 385.617 kb on + strandat 385.617 kb on + strandat 385.617 kb on + strandat 385.618 kb on - strandat 385.618 kb on - strandat 385.618 kb on - strandat 385.661 kb on + strandat 385.662 kb on - strandat 385.662 kb on - strandat 385.662 kb on - strandat 385.662 kb on - strandat 385.807 kb on - strandat 385.825 kb on + strandat 385.826 kb on - strandat 385.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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381,947 + ABZR87_RS17950 0.55 -0.1
381,947 + ABZR87_RS17950 0.55 -0.5
381,948 - ABZR87_RS17950 0.55 -1.9
381,948 - ABZR87_RS17950 0.55 +1.0
381,948 - ABZR87_RS17950 0.55 +6.5
381,948 - ABZR87_RS17950 0.55 +1.6
381,948 - ABZR87_RS17950 0.55 +0.5
381,948 - ABZR87_RS17950 0.55 +0.7
381,949 + ABZR87_RS17950 0.56 -1.2
382,037 + ABZR87_RS17950 0.65 +0.6
382,190 + ABZR87_RS17950 0.81 +0.4
382,190 + ABZR87_RS17950 0.81 +1.1
382,190 + ABZR87_RS17950 0.81 +1.1
382,190 + ABZR87_RS17950 0.81 +1.5
382,190 + ABZR87_RS17950 0.81 -0.0
382,191 - ABZR87_RS17950 0.81 +1.1
382,191 - ABZR87_RS17950 0.81 +0.3
382,191 - ABZR87_RS17950 0.81 +0.7
382,367 + +0.8
382,826 + -0.8
382,826 + -1.4
382,826 + +0.1
382,826 + -0.2
382,826 + +0.5
382,826 + +0.0
382,826 + +1.0
382,827 - +0.7
383,140 - ABZR87_RS17960 0.14 -0.8
383,157 - ABZR87_RS17960 0.15 -0.2
383,178 + ABZR87_RS17960 0.16 -0.9
383,178 + ABZR87_RS17960 0.16 -0.8
383,178 + ABZR87_RS17960 0.16 -1.7
383,178 + ABZR87_RS17960 0.16 +0.2
383,179 - ABZR87_RS17960 0.16 -0.4
383,179 - ABZR87_RS17960 0.16 +0.3
383,179 - ABZR87_RS17960 0.16 +2.7
383,952 + ABZR87_RS17960 0.52 -0.5
383,952 + ABZR87_RS17960 0.52 -0.2
383,952 + ABZR87_RS17960 0.52 -0.4
383,952 + ABZR87_RS17960 0.52 -1.2
383,952 + ABZR87_RS17960 0.52 +0.9
383,953 - ABZR87_RS17960 0.52 -0.4
384,084 - ABZR87_RS17960 0.58 +1.1
384,387 + ABZR87_RS17960 0.72 +0.5
384,423 + ABZR87_RS17960 0.73 -0.0
384,424 - ABZR87_RS17960 0.73 -0.5
384,634 - ABZR87_RS17960 0.83 -2.6
384,634 - ABZR87_RS17960 0.83 +0.9
384,634 - ABZR87_RS17960 0.83 +1.1
384,654 + ABZR87_RS17960 0.84 -1.6
384,655 - ABZR87_RS17960 0.84 +0.0
384,655 - ABZR87_RS17960 0.84 -1.0
384,655 - ABZR87_RS17960 0.84 -0.9
384,655 - ABZR87_RS17960 0.84 +0.2
384,801 + +0.2
384,801 + -0.5
384,802 - +0.9
384,802 - -2.4
384,802 - -2.0
384,872 - -0.3
384,999 + +0.2
385,128 + +1.0
385,128 + +1.2
385,128 + -0.4
385,129 - -1.5
385,129 - -1.2
385,159 - ABZR87_RS17965 0.16 -1.2
385,197 + ABZR87_RS17965 0.24 -0.9
385,197 + ABZR87_RS17965 0.24 +0.6
385,197 + ABZR87_RS17965 0.24 +4.7
385,327 - ABZR87_RS17965 0.50 +0.1
385,327 - ABZR87_RS17965 0.50 -0.1
385,327 - ABZR87_RS17965 0.50 +0.4
385,327 - ABZR87_RS17965 0.50 -0.9
385,327 - ABZR87_RS17965 0.50 -2.1
385,461 + ABZR87_RS17965 0.77 +0.6
385,617 + -0.3
385,617 + +0.4
385,617 + +0.0
385,617 + +1.0
385,617 + +0.6
385,618 - -0.8
385,618 - -0.9
385,618 - -0.7
385,661 + +3.2
385,662 - +0.2
385,662 - +0.3
385,662 - -1.4
385,662 - +0.2
385,807 - +2.9
385,825 + +0.0
385,826 - +0.2
385,826 - -1.3

Or see this region's nucleotide sequence