Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17260

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17255 and ABZR87_RS17260 are separated by 451 nucleotidesABZR87_RS17260 and ABZR87_RS17265 are separated by 96 nucleotidesABZR87_RS17265 and ABZR87_RS17270 are separated by 9 nucleotidesABZR87_RS17270 and ABZR87_RS17275 are separated by 106 nucleotides ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007 _RS17255 ABZR87_RS17260: ABZR87_RS17260 - ferric iron uptake transcriptional regulator, at 230,459 to 230,914 _RS17260 ABZR87_RS17265: ABZR87_RS17265 - hypothetical protein, at 231,011 to 231,262 _RS17265 ABZR87_RS17270: ABZR87_RS17270 - hypothetical protein, at 231,272 to 231,577 _RS17270 ABZR87_RS17275: ABZR87_RS17275 - DUF6587 family protein, at 231,684 to 232,004 _RS17275 Position (kb) 230 231Strain fitness (log2 ratio) -2 -1 0 1 2at 229.462 kb on + strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.487 kb on - strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.813 kb on + strand, within ABZR87_RS17255at 229.814 kb on - strand, within ABZR87_RS17255at 229.867 kb on + strand, within ABZR87_RS17255at 229.868 kb on - strand, within ABZR87_RS17255at 229.952 kb on + strandat 229.953 kb on - strandat 229.981 kb on + strandat 230.006 kb on - strandat 230.006 kb on - strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.264 kb on + strandat 230.265 kb on - strandat 230.265 kb on - strandat 230.415 kb on + strandat 230.415 kb on + strandat 230.415 kb on + strandat 230.432 kb on + strandat 230.432 kb on + strandat 230.433 kb on - strandat 230.433 kb on - strandat 230.494 kb on + strandat 230.494 kb on + strandat 230.579 kb on + strand, within ABZR87_RS17260at 230.579 kb on + strand, within ABZR87_RS17260at 230.580 kb on - strand, within ABZR87_RS17260at 230.580 kb on - strand, within ABZR87_RS17260at 230.580 kb on - strand, within ABZR87_RS17260at 230.627 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.674 kb on + strand, within ABZR87_RS17260at 230.675 kb on - strand, within ABZR87_RS17260at 230.675 kb on - strand, within ABZR87_RS17260at 230.675 kb on - strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.699 kb on + strand, within ABZR87_RS17260at 230.700 kb on - strand, within ABZR87_RS17260at 230.700 kb on - strand, within ABZR87_RS17260at 230.849 kb on + strand, within ABZR87_RS17260at 230.850 kb on - strand, within ABZR87_RS17260at 230.925 kb on + strandat 230.926 kb on - strandat 230.926 kb on - strandat 230.941 kb on + strandat 230.942 kb on - strandat 230.995 kb on + strandat 231.239 kb on + strandat 231.239 kb on + strandat 231.239 kb on + strandat 231.239 kb on + strandat 231.239 kb on + strandat 231.240 kb on - strandat 231.240 kb on - strandat 231.273 kb on + strandat 231.273 kb on + strandat 231.274 kb on - strandat 231.426 kb on - strand, within ABZR87_RS17270at 231.609 kb on + strandat 231.610 kb on - strandat 231.610 kb on - strandat 231.685 kb on + strandat 231.686 kb on - strandat 231.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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229,462 + ABZR87_RS17255 0.56 +0.6
229,462 + ABZR87_RS17255 0.56 -0.7
229,463 - ABZR87_RS17255 0.57 +0.2
229,463 - ABZR87_RS17255 0.57 -0.9
229,463 - ABZR87_RS17255 0.57 +0.4
229,486 + ABZR87_RS17255 0.58 +0.4
229,486 + ABZR87_RS17255 0.58 +0.1
229,487 - ABZR87_RS17255 0.58 -0.3
229,519 + ABZR87_RS17255 0.61 -0.4
229,519 + ABZR87_RS17255 0.61 +0.7
229,520 - ABZR87_RS17255 0.61 +1.0
229,520 - ABZR87_RS17255 0.61 -1.0
229,813 + ABZR87_RS17255 0.84 -0.2
229,813 + ABZR87_RS17255 0.84 +0.0
229,813 + ABZR87_RS17255 0.84 -0.5
229,813 + ABZR87_RS17255 0.84 -2.0
229,814 - ABZR87_RS17255 0.85 +1.5
229,867 + ABZR87_RS17255 0.89 +1.6
229,868 - ABZR87_RS17255 0.89 -0.7
229,952 + -0.9
229,953 - -1.4
229,981 + -0.7
230,006 - -1.1
230,006 - +1.3
230,264 + -0.2
230,264 + +0.3
230,264 + -1.5
230,264 + +0.0
230,264 + -0.1
230,265 - +0.3
230,265 - +0.8
230,415 + -0.3
230,415 + +1.8
230,415 + -1.0
230,432 + +0.2
230,432 + -0.5
230,433 - -0.4
230,433 - -1.1
230,494 + +2.0
230,494 + +1.6
230,579 + ABZR87_RS17260 0.26 -2.3
230,579 + ABZR87_RS17260 0.26 +0.2
230,580 - ABZR87_RS17260 0.27 -1.0
230,580 - ABZR87_RS17260 0.27 +0.5
230,580 - ABZR87_RS17260 0.27 +0.2
230,627 + ABZR87_RS17260 0.37 -0.1
230,674 + ABZR87_RS17260 0.47 -0.0
230,674 + ABZR87_RS17260 0.47 -1.9
230,674 + ABZR87_RS17260 0.47 +0.6
230,674 + ABZR87_RS17260 0.47 +0.1
230,674 + ABZR87_RS17260 0.47 +0.2
230,674 + ABZR87_RS17260 0.47 +0.1
230,675 - ABZR87_RS17260 0.47 -0.1
230,675 - ABZR87_RS17260 0.47 +0.2
230,675 - ABZR87_RS17260 0.47 +0.8
230,699 + ABZR87_RS17260 0.53 +0.6
230,699 + ABZR87_RS17260 0.53 +0.2
230,699 + ABZR87_RS17260 0.53 -1.4
230,699 + ABZR87_RS17260 0.53 +0.7
230,699 + ABZR87_RS17260 0.53 +0.9
230,699 + ABZR87_RS17260 0.53 -0.1
230,699 + ABZR87_RS17260 0.53 -0.3
230,700 - ABZR87_RS17260 0.53 -0.1
230,700 - ABZR87_RS17260 0.53 -0.4
230,849 + ABZR87_RS17260 0.86 -0.2
230,850 - ABZR87_RS17260 0.86 +1.5
230,925 + -1.3
230,926 - +1.3
230,926 - -1.1
230,941 + +1.4
230,942 - +0.8
230,995 + +1.7
231,239 + -0.1
231,239 + +0.6
231,239 + +0.3
231,239 + +0.3
231,239 + -1.1
231,240 - -0.8
231,240 - -0.4
231,273 + -0.5
231,273 + +0.6
231,274 - +1.0
231,426 - ABZR87_RS17270 0.50 +0.4
231,609 + +1.7
231,610 - -0.3
231,610 - +0.5
231,685 + -0.7
231,686 - -0.9
231,686 - -0.9

Or see this region's nucleotide sequence