Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16870

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
138,209	+		ABZR87_RS16865	0.52	-0.7
138,209	+		ABZR87_RS16865	0.52	-1.3
138,210	-		ABZR87_RS16865	0.53	-1.0
138,230	+		ABZR87_RS16865	0.54	-0.1
138,230	+		ABZR87_RS16865	0.54	+2.7
138,230	+		ABZR87_RS16865	0.54	-0.2
138,231	-		ABZR87_RS16865	0.54	-0.5
138,231	-		ABZR87_RS16865	0.54	+0.7
138,231	-		ABZR87_RS16865	0.54	-0.3
138,455	+		ABZR87_RS16865	0.70	+0.3
138,456	-		ABZR87_RS16865	0.70	-0.0
138,489	+		ABZR87_RS16865	0.73	-0.4
138,489	+		ABZR87_RS16865	0.73	-0.7
138,489	+		ABZR87_RS16865	0.73	-0.7
138,489	+		ABZR87_RS16865	0.73	-0.3
138,490	-		ABZR87_RS16865	0.73	+0.8
138,585	+		ABZR87_RS16865	0.80	-0.6
138,605	+		ABZR87_RS16865	0.81	-0.1
138,605	+		ABZR87_RS16865	0.81	+1.8
138,605	+		ABZR87_RS16865	0.81	+0.1
138,606	-		ABZR87_RS16865	0.81	+0.9
138,606	-		ABZR87_RS16865	0.81	-0.8
138,606	-		ABZR87_RS16865	0.81	-0.4
138,629	+		ABZR87_RS16865	0.83	+1.1
138,629	+		ABZR87_RS16865	0.83	+1.9
138,630	-		ABZR87_RS16865	0.83	+0.5
138,711	+		ABZR87_RS16865	0.89	+0.2
138,711	+		ABZR87_RS16865	0.89	+0.2
138,711	+		ABZR87_RS16865	0.89	+0.0
138,711	+		ABZR87_RS16865	0.89	-0.6
138,711	+		ABZR87_RS16865	0.89	-0.4
138,712	-		ABZR87_RS16865	0.89	-0.3
138,712	-		ABZR87_RS16865	0.89	+0.2
138,753	-				+1.1
138,841	+				-0.5
138,842	-				-0.6
138,855	+				-0.4
138,855	+				-0.1
138,855	+				+1.3
138,855	+				+0.5
138,897	+				+2.2
138,931	+				+0.7
138,932	-				+0.6
138,933	+				+0.6
138,933	+				-0.9
138,933	+				-0.8
138,933	+				+0.8
138,933	+				+0.6
138,933	+				+0.2
138,933	+				+1.0
138,933	+				-0.1
138,933	+				+0.3
138,934	-				+0.5
138,934	-				-0.1
138,934	-				+1.0
138,934	-				-0.5
138,934	-				+1.1
138,934	-				-0.3
138,934	-				+1.4
138,934	-				+0.2
138,934	-				+0.3
138,934	-				-1.8
138,934	-				-0.4
138,934	-				-0.1
138,934	-				-0.0
138,934	-				-1.1
138,934	-				+0.2
138,934	-				+0.5
138,934	-				-0.5
138,934	-				-0.1
138,937	+				-1.0
138,938	-				+2.1
138,938	-				+0.1
138,963	+				+3.9
138,963	+				+0.5
138,964	-				-0.7
138,999	+				-0.3
138,999	+				+0.3
138,999	+				-0.6
139,000	-				-0.5
139,002	+				+0.7
139,050	+				+1.6
139,068	-				-0.4
139,090	-				-0.4
139,092	+				+4.6
139,092	+				+0.2
139,275	+		ABZR87_RS16870	0.12	+0.1
139,275	+		ABZR87_RS16870	0.12	-0.2
139,275	+		ABZR87_RS16870	0.12	-0.4
139,348	+		ABZR87_RS16870	0.18	-0.5
139,448	+		ABZR87_RS16870	0.26	-0.1
139,448	+		ABZR87_RS16870	0.26	+0.0
139,448	+		ABZR87_RS16870	0.26	+0.2
139,448	+		ABZR87_RS16870	0.26	-0.8
139,448	+		ABZR87_RS16870	0.26	+0.8
139,448	+		ABZR87_RS16870	0.26	+0.4
139,448	+		ABZR87_RS16870	0.26	-0.1
139,448	+		ABZR87_RS16870	0.26	+0.0
139,448	+		ABZR87_RS16870	0.26	+0.6
139,449	-		ABZR87_RS16870	0.26	-0.6
139,449	-		ABZR87_RS16870	0.26	+0.6
139,449	-		ABZR87_RS16870	0.26	-1.3
139,449	-		ABZR87_RS16870	0.26	-0.1
139,449	-		ABZR87_RS16870	0.26	+0.7
139,641	-		ABZR87_RS16870	0.41	+0.4
139,641	-		ABZR87_RS16870	0.41	+0.1
139,641	-		ABZR87_RS16870	0.41	-0.1
139,641	-		ABZR87_RS16870	0.41	-1.7
139,684	+		ABZR87_RS16870	0.45	+0.0
139,761	+		ABZR87_RS16870	0.51	-1.3
139,761	+		ABZR87_RS16870	0.51	-0.2
139,761	+		ABZR87_RS16870	0.51	-0.2
139,761	+		ABZR87_RS16870	0.51	-0.8
139,761	+		ABZR87_RS16870	0.51	+0.4
139,762	-		ABZR87_RS16870	0.51	+1.3
139,762	-		ABZR87_RS16870	0.51	+3.7
139,863	+		ABZR87_RS16870	0.59	+1.6
139,863	+		ABZR87_RS16870	0.59	+0.0
139,863	+		ABZR87_RS16870	0.59	-0.4
139,863	+		ABZR87_RS16870	0.59	-1.3
139,864	-		ABZR87_RS16870	0.59	-0.4
139,864	-		ABZR87_RS16870	0.59	-1.2
139,864	-		ABZR87_RS16870	0.59	-2.1
139,864	-		ABZR87_RS16870	0.59	-0.3
139,864	-		ABZR87_RS16870	0.59	+0.2
139,864	-		ABZR87_RS16870	0.59	-0.3
139,864	-		ABZR87_RS16870	0.59	-0.5
139,958	+		ABZR87_RS16870	0.67	+0.7
139,983	+		ABZR87_RS16870	0.69	+0.5
139,983	+		ABZR87_RS16870	0.69	+1.7
140,126	+		ABZR87_RS16870	0.81	+1.3
140,126	+		ABZR87_RS16870	0.81	+0.3
140,126	+		ABZR87_RS16870	0.81	+0.1
140,126	+		ABZR87_RS16870	0.81	-1.7
140,126	+		ABZR87_RS16870	0.81	+0.9
140,127	-		ABZR87_RS16870	0.81	+1.2
140,161	+		ABZR87_RS16870	0.83	+0.6
140,161	+		ABZR87_RS16870	0.83	-0.1
140,161	+		ABZR87_RS16870	0.83	-1.0
140,162	-		ABZR87_RS16870	0.83	+0.8
140,162	-		ABZR87_RS16870	0.83	+0.3
140,167	-		ABZR87_RS16870	0.84	-0.8
140,263	+				-0.2
140,264	-				+0.5
140,264	-				-1.3
140,264	-				+0.5
140,264	-				+0.4
140,280	+				-0.2
140,281	-				-1.4
140,281	-				-1.1
140,281	-				-1.5
140,287	+				-0.2
140,287	+				-0.1
140,287	+				+0.1
140,287	+				-0.1
140,288	-				+0.8
140,288	-				+2.6
140,364	+				+0.6
140,365	-				+0.6
140,373	-				-1.0
140,373	-				+2.7
140,396	+				+2.2
140,396	+				-0.8
140,414	+				+2.7
140,481	+				+0.4
140,481	+				+1.4
140,502	+				-0.8
140,503	-				-0.4
140,503	-				-1.5
140,503	-				-0.5
140,527	-				+0.6
140,583	-				-0.5
140,593	+				-0.4
140,593	+				+1.4
140,593	+				+0.8
140,594	-				+1.2
140,594	-				-0.0
140,594	-				-0.6
140,594	-				+0.3
140,594	-				+0.1
140,600	+				-0.1
140,600	+				+1.0
140,600	+				-0.4
140,601	-				+3.2
140,642	+				-0.3
140,643	-				-0.0
140,687	+				-1.9
140,759	+				-0.1
140,759	+				-0.1
140,760	-				-1.8
140,760	-				-1.2
140,760	-				-0.6
140,839	+				-0.9
140,839	+				-0.3
140,839	+				+0.3
140,839	+				+1.1
140,840	-				-0.6
140,840	-				-0.5
140,881	+				-0.9
140,881	+				+0.6
140,881	+				-0.3
140,881	+				+0.4
140,882	-				+3.5
140,882	-				-0.2
140,882	-				+0.3
141,021	+		ABZR87_RS16875	0.37	-0.2
141,022	-		ABZR87_RS16875	0.38	-2.1
141,224	+		ABZR87_RS16875	0.86	-0.0
141,224	+		ABZR87_RS16875	0.86	-0.3
141,224	+		ABZR87_RS16875	0.86	-1.5
141,225	-		ABZR87_RS16875	0.86	-1.2
141,225	-		ABZR87_RS16875	0.86	+2.7
141,225	-		ABZR87_RS16875	0.86	+0.6
141,225	-		ABZR87_RS16875	0.86	-0.0
141,309	+				-1.1
141,309	+				-0.1
141,310	-				-1.2
141,310	-				+1.4
141,310	-				-1.2
141,310	-				-0.4
141,310	-				-1.8
141,310	-				+0.1
141,337	-				-2.2
141,337	-				+2.5