Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16515 and ABZR87_RS16520 are separated by 97 nucleotides ABZR87_RS16520 and ABZR87_RS16525 are separated by 27 nucleotides ABZR87_RS16525 and ABZR87_RS16530 are separated by 136 nucleotides
ABZR87_RS16515: ABZR87_RS16515 - helix-turn-helix domain-containing protein, at 55,684 to 56,655
_RS16515
ABZR87_RS16520: ABZR87_RS16520 - tautomerase family protein, at 56,753 to 57,205
_RS16520
ABZR87_RS16525: ABZR87_RS16525 - dienelactone hydrolase family protein, at 57,233 to 58,048
_RS16525
ABZR87_RS16530: ABZR87_RS16530 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 58,185 to 60,563
_RS16530
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 56.293 kb on + strand, within ABZR87_RS16515 at 56.417 kb on - strand, within ABZR87_RS16515 at 56.417 kb on - strand, within ABZR87_RS16515 at 56.618 kb on + strand at 56.632 kb on + strand at 56.632 kb on + strand at 56.633 kb on - strand at 57.320 kb on + strand, within ABZR87_RS16525 at 57.320 kb on + strand, within ABZR87_RS16525 at 57.320 kb on + strand, within ABZR87_RS16525 at 57.320 kb on + strand, within ABZR87_RS16525 at 57.320 kb on + strand, within ABZR87_RS16525 at 57.321 kb on - strand, within ABZR87_RS16525 at 57.321 kb on - strand, within ABZR87_RS16525 at 57.321 kb on - strand, within ABZR87_RS16525 at 57.321 kb on - strand, within ABZR87_RS16525 at 57.345 kb on + strand, within ABZR87_RS16525 at 57.345 kb on + strand, within ABZR87_RS16525 at 57.428 kb on + strand, within ABZR87_RS16525 at 57.428 kb on + strand, within ABZR87_RS16525 at 57.428 kb on + strand, within ABZR87_RS16525 at 57.428 kb on + strand, within ABZR87_RS16525 at 57.428 kb on + strand, within ABZR87_RS16525 at 57.429 kb on - strand, within ABZR87_RS16525 at 57.429 kb on - strand, within ABZR87_RS16525 at 57.429 kb on - strand, within ABZR87_RS16525 at 57.800 kb on + strand, within ABZR87_RS16525 at 57.848 kb on + strand, within ABZR87_RS16525 at 57.848 kb on + strand, within ABZR87_RS16525 at 58.150 kb on + strand at 58.199 kb on + strand at 58.199 kb on + strand at 58.199 kb on + strand at 58.199 kb on + strand at 58.200 kb on - strand at 58.224 kb on + strand at 58.225 kb on - strand at 58.225 kb on - strand at 58.293 kb on + strand at 58.483 kb on + strand, within ABZR87_RS16530 at 58.483 kb on + strand, within ABZR87_RS16530 at 58.484 kb on - strand, within ABZR87_RS16530 at 58.484 kb on - strand, within ABZR87_RS16530 at 58.484 kb on - strand, within ABZR87_RS16530 at 58.484 kb on - strand, within ABZR87_RS16530 at 58.484 kb on - strand, within ABZR87_RS16530 at 58.635 kb on + strand, within ABZR87_RS16530 at 58.644 kb on - strand, within ABZR87_RS16530 at 58.644 kb on - strand, within ABZR87_RS16530 at 58.647 kb on + strand, within ABZR87_RS16530 at 58.647 kb on + strand, within ABZR87_RS16530 at 58.647 kb on + strand, within ABZR87_RS16530 at 58.647 kb on + strand, within ABZR87_RS16530 at 58.648 kb on - strand, within ABZR87_RS16530 at 58.648 kb on - strand, within ABZR87_RS16530 at 58.648 kb on - strand, within ABZR87_RS16530 at 58.648 kb on - strand, within ABZR87_RS16530 at 58.648 kb on - strand, within ABZR87_RS16530 at 58.768 kb on - strand, within ABZR87_RS16530 at 58.893 kb on + strand, within ABZR87_RS16530 at 58.893 kb on + strand, within ABZR87_RS16530 at 58.893 kb on + strand, within ABZR87_RS16530 at 58.893 kb on + strand, within ABZR87_RS16530 at 58.894 kb on - strand, within ABZR87_RS16530 at 58.894 kb on - strand, within ABZR87_RS16530 at 58.991 kb on + strand, within ABZR87_RS16530 at 58.991 kb on + strand, within ABZR87_RS16530 at 58.992 kb on - strand, within ABZR87_RS16530 at 58.992 kb on - strand, within ABZR87_RS16530
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 56,293 + ABZR87_RS16515 0.63 -0.4 56,417 - ABZR87_RS16515 0.75 -0.2 56,417 - ABZR87_RS16515 0.75 -0.7 56,618 + -0.9 56,632 + -0.4 56,632 + -1.2 56,633 - +0.6 57,320 + ABZR87_RS16525 0.11 -0.5 57,320 + ABZR87_RS16525 0.11 -0.2 57,320 + ABZR87_RS16525 0.11 -0.3 57,320 + ABZR87_RS16525 0.11 -0.1 57,320 + ABZR87_RS16525 0.11 -0.1 57,321 - ABZR87_RS16525 0.11 -0.6 57,321 - ABZR87_RS16525 0.11 +0.2 57,321 - ABZR87_RS16525 0.11 -1.9 57,321 - ABZR87_RS16525 0.11 +0.6 57,345 + ABZR87_RS16525 0.14 +1.1 57,345 + ABZR87_RS16525 0.14 +2.1 57,428 + ABZR87_RS16525 0.24 -0.4 57,428 + ABZR87_RS16525 0.24 -0.1 57,428 + ABZR87_RS16525 0.24 +0.7 57,428 + ABZR87_RS16525 0.24 +1.1 57,428 + ABZR87_RS16525 0.24 -0.7 57,429 - ABZR87_RS16525 0.24 +0.4 57,429 - ABZR87_RS16525 0.24 -2.8 57,429 - ABZR87_RS16525 0.24 +0.3 57,800 + ABZR87_RS16525 0.69 +0.8 57,848 + ABZR87_RS16525 0.75 -0.1 57,848 + ABZR87_RS16525 0.75 +0.8 58,150 + +1.5 58,199 + -0.2 58,199 + -0.3 58,199 + +0.9 58,199 + +1.0 58,200 - +0.9 58,224 + -1.3 58,225 - -1.1 58,225 - +1.5 58,293 + +2.8 58,483 + ABZR87_RS16530 0.13 -0.3 58,483 + ABZR87_RS16530 0.13 +0.7 58,484 - ABZR87_RS16530 0.13 +0.5 58,484 - ABZR87_RS16530 0.13 -0.3 58,484 - ABZR87_RS16530 0.13 -0.8 58,484 - ABZR87_RS16530 0.13 -0.4 58,484 - ABZR87_RS16530 0.13 -0.9 58,635 + ABZR87_RS16530 0.19 +0.1 58,644 - ABZR87_RS16530 0.19 +0.2 58,644 - ABZR87_RS16530 0.19 -0.1 58,647 + ABZR87_RS16530 0.19 -0.9 58,647 + ABZR87_RS16530 0.19 +2.7 58,647 + ABZR87_RS16530 0.19 -0.7 58,647 + ABZR87_RS16530 0.19 +0.6 58,648 - ABZR87_RS16530 0.19 +0.3 58,648 - ABZR87_RS16530 0.19 +0.2 58,648 - ABZR87_RS16530 0.19 +0.6 58,648 - ABZR87_RS16530 0.19 -0.4 58,648 - ABZR87_RS16530 0.19 -0.1 58,768 - ABZR87_RS16530 0.25 -0.7 58,893 + ABZR87_RS16530 0.30 -0.7 58,893 + ABZR87_RS16530 0.30 -0.1 58,893 + ABZR87_RS16530 0.30 -0.6 58,893 + ABZR87_RS16530 0.30 +0.3 58,894 - ABZR87_RS16530 0.30 -0.0 58,894 - ABZR87_RS16530 0.30 +1.2 58,991 + ABZR87_RS16530 0.34 -0.8 58,991 + ABZR87_RS16530 0.34 -0.1 58,992 - ABZR87_RS16530 0.34 +0.8 58,992 - ABZR87_RS16530 0.34 +0.1
Or see this region's nucleotide sequence