Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14110

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14105 and ABZR87_RS14110 are separated by 108 nucleotidesABZR87_RS14110 and ABZR87_RS14115 are separated by 145 nucleotides ABZR87_RS14105: ABZR87_RS14105 - phosphoglucosamine mutase, at 2,977,233 to 2,978,576 _RS14105 ABZR87_RS14110: ABZR87_RS14110 - dihydropteroate synthase, at 2,978,685 to 2,979,548 _RS14110 ABZR87_RS14115: ABZR87_RS14115 - ATP-dependent zinc metalloprotease FtsH, at 2,979,694 to 2,981,580 _RS14115 Position (kb) 2978 2979 2980Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2978.564 kb on - strandat 2978.615 kb on + strandat 2978.616 kb on - strandat 2978.703 kb on + strandat 2978.703 kb on + strandat 2978.703 kb on + strandat 2979.564 kb on - strandat 2979.564 kb on - strandat 2979.564 kb on - strandat 2979.564 kb on - strandat 2979.682 kb on - strandat 2979.760 kb on - strandat 2980.028 kb on + strand, within ABZR87_RS14115

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,978,564 - +1.9
2,978,615 + -0.4
2,978,616 - +0.6
2,978,703 + -0.5
2,978,703 + -0.5
2,978,703 + -2.3
2,979,564 - -2.9
2,979,564 - +0.0
2,979,564 - +0.6
2,979,564 - -0.7
2,979,682 - +2.9
2,979,760 - +0.6
2,980,028 + ABZR87_RS14115 0.18 -6.7

Or see this region's nucleotide sequence