Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13625

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,880,276	+		ABZR87_RS13615	0.65	+0.1
2,880,277	-		ABZR87_RS13615	0.65	-0.0
2,880,277	-		ABZR87_RS13615	0.65	+1.2
2,880,277	-		ABZR87_RS13615	0.65	-0.4
2,880,288	+		ABZR87_RS13615	0.68	+0.2
2,880,288	+		ABZR87_RS13615	0.68	+0.9
2,880,288	+		ABZR87_RS13615	0.68	-1.2
2,880,288	+		ABZR87_RS13615	0.68	+2.7
2,880,288	+		ABZR87_RS13615	0.68	-0.5
2,880,289	-		ABZR87_RS13615	0.68	+0.4
2,880,289	-		ABZR87_RS13615	0.68	-0.2
2,880,289	-		ABZR87_RS13615	0.68	-0.7
2,880,408	+				+1.3
2,880,408	+				+0.8
2,880,409	-				+0.7
2,880,409	-				-0.3
2,880,409	-				-0.9
2,880,410	+				-2.2
2,880,410	+				+0.5
2,880,410	+				-0.2
2,880,410	+				-0.4
2,880,411	-				+0.1
2,880,411	-				+0.3
2,880,411	-				+1.0
2,880,411	-				-1.2
2,880,411	-				-0.1
2,880,411	-				+0.1
2,880,411	-				-1.5
2,880,428	-				-1.2
2,880,465	+				+1.1
2,880,465	+				+0.0
2,880,465	+				+0.2
2,880,465	+				-2.4
2,880,465	+				-0.4
2,880,466	-				+0.2
2,880,466	-				-0.3
2,880,466	-				+0.3
2,880,466	-				-0.2
2,880,599	+				+0.5
2,880,599	+				-0.2
2,880,600	-				-0.3
2,880,621	+				-0.2
2,880,622	-				-1.3
2,880,680	+				+0.1
2,880,688	+				-0.3
2,880,689	-				-0.2
2,880,689	-				+0.3
2,880,689	-				+0.4
2,880,710	+				+0.1
2,880,711	-				-0.7
2,880,711	-				-0.0
2,880,865	+		ABZR87_RS13620	0.40	+1.0
2,880,865	+		ABZR87_RS13620	0.40	-0.0
2,880,865	+		ABZR87_RS13620	0.40	+4.2
2,880,866	-		ABZR87_RS13620	0.40	+0.1
2,880,866	-		ABZR87_RS13620	0.40	-0.2
2,880,866	-		ABZR87_RS13620	0.40	+0.6
2,880,866	-		ABZR87_RS13620	0.40	-0.1
2,880,866	-		ABZR87_RS13620	0.40	+0.0
2,880,866	-		ABZR87_RS13620	0.40	-2.4
2,880,899	+		ABZR87_RS13620	0.48	-0.7
2,880,899	+		ABZR87_RS13620	0.48	-0.3
2,880,900	-		ABZR87_RS13620	0.48	+0.3
2,880,900	-		ABZR87_RS13620	0.48	+0.9
2,880,932	+		ABZR87_RS13620	0.56	-1.7
2,880,933	-		ABZR87_RS13620	0.56	-0.6
2,880,933	-		ABZR87_RS13620	0.56	+0.3
2,880,933	-		ABZR87_RS13620	0.56	+0.3
2,881,020	+		ABZR87_RS13620	0.77	+1.5
2,881,052	+		ABZR87_RS13620	0.84	+0.3
2,881,053	-		ABZR87_RS13620	0.84	-0.4
2,881,089	+				+0.7
2,881,089	+				+1.2
2,881,089	+				-0.7
2,881,089	+				+0.3
2,881,090	-				-0.4
2,881,093	+				-0.9
2,881,093	+				+0.3
2,881,093	+				+0.0
2,881,093	+				+0.2
2,881,093	+				+1.5
2,881,094	-				-0.1
2,881,105	+				+1.1
2,881,105	+				+1.3
2,881,105	+				-0.7
2,881,106	-				-0.3
2,881,212	+				-1.4
2,881,212	+				+0.1
2,881,212	+				+0.4
2,881,213	-				+0.7
2,881,213	-				-0.8
2,881,213	-				-0.6
2,881,213	-				-0.8
2,881,213	-				-0.5
2,881,217	+				-0.7
2,881,217	+				-0.5
2,881,218	-				+0.1
2,881,238	+				+0.1
2,881,260	+				+0.3
2,881,260	+				+0.6
2,881,260	+				-1.1
2,881,261	-				+0.1
2,881,261	-				+0.7
2,881,261	-				+1.2
2,881,261	-				-0.1
2,881,261	-				-0.6
2,881,335	+		ABZR87_RS13625	0.21	-1.5
2,881,335	+		ABZR87_RS13625	0.21	-1.0
2,881,335	+		ABZR87_RS13625	0.21	-0.4
2,881,384	-		ABZR87_RS13625	0.30	-3.0
2,881,405	+		ABZR87_RS13625	0.34	-2.5
2,881,405	+		ABZR87_RS13625	0.34	-0.3
2,881,464	+		ABZR87_RS13625	0.45	-0.3
2,881,464	+		ABZR87_RS13625	0.45	-0.9
2,881,464	+		ABZR87_RS13625	0.45	+0.5
2,881,464	+		ABZR87_RS13625	0.45	-1.3
2,881,464	+		ABZR87_RS13625	0.45	-0.5
2,881,464	+		ABZR87_RS13625	0.45	+0.7
2,881,464	+		ABZR87_RS13625	0.45	-1.2
2,881,465	-		ABZR87_RS13625	0.46	+1.2
2,881,465	-		ABZR87_RS13625	0.46	+0.1
2,881,465	-		ABZR87_RS13625	0.46	-1.2
2,881,465	-		ABZR87_RS13625	0.46	-0.2
2,881,465	-		ABZR87_RS13625	0.46	-1.3
2,881,465	-		ABZR87_RS13625	0.46	-0.6
2,881,465	-		ABZR87_RS13625	0.46	-0.1
2,881,491	+		ABZR87_RS13625	0.50	+1.6
2,881,491	+		ABZR87_RS13625	0.50	-1.5
2,881,515	+		ABZR87_RS13625	0.55	-0.5
2,881,516	-		ABZR87_RS13625	0.55	-0.1
2,881,516	-		ABZR87_RS13625	0.55	-0.1
2,881,516	-		ABZR87_RS13625	0.55	-1.1
2,881,532	+		ABZR87_RS13625	0.58	-2.1
2,881,532	+		ABZR87_RS13625	0.58	+1.6
2,881,532	+		ABZR87_RS13625	0.58	+1.6
2,881,532	+		ABZR87_RS13625	0.58	-0.3
2,881,532	+		ABZR87_RS13625	0.58	-0.6
2,881,532	+		ABZR87_RS13625	0.58	+0.9
2,881,532	+		ABZR87_RS13625	0.58	-0.4
2,881,532	+		ABZR87_RS13625	0.58	+0.8
2,881,533	-		ABZR87_RS13625	0.58	-0.7
2,881,533	-		ABZR87_RS13625	0.58	-0.4
2,881,533	-		ABZR87_RS13625	0.58	+0.9
2,881,533	-		ABZR87_RS13625	0.58	-0.8
2,881,533	-		ABZR87_RS13625	0.58	+2.8
2,881,533	-		ABZR87_RS13625	0.58	-0.0
2,881,536	+		ABZR87_RS13625	0.59	-1.5
2,881,536	+		ABZR87_RS13625	0.59	-0.1
2,881,536	+		ABZR87_RS13625	0.59	+0.5
2,881,536	+		ABZR87_RS13625	0.59	-1.7
2,881,536	+		ABZR87_RS13625	0.59	-0.7
2,881,536	+		ABZR87_RS13625	0.59	-0.2
2,881,536	+		ABZR87_RS13625	0.59	+0.5
2,881,536	+		ABZR87_RS13625	0.59	-0.6
2,881,537	-		ABZR87_RS13625	0.59	-0.0
2,881,537	-		ABZR87_RS13625	0.59	+0.0
2,881,537	-		ABZR87_RS13625	0.59	+0.4
2,881,539	+		ABZR87_RS13625	0.60	+0.5
2,881,540	-		ABZR87_RS13625	0.60	+0.2
2,881,540	-		ABZR87_RS13625	0.60	-0.1
2,881,540	-		ABZR87_RS13625	0.60	+0.0
2,881,640	+		ABZR87_RS13625	0.79	-0.2
2,881,640	+		ABZR87_RS13625	0.79	-3.3
2,881,640	+		ABZR87_RS13625	0.79	-2.1
2,881,640	+		ABZR87_RS13625	0.79	+0.5
2,881,809	+				+2.5
2,881,809	+				-0.4
2,881,809	+				-0.1
2,881,810	-				-0.0
2,881,810	-				+0.9
2,881,810	-				-0.1
2,881,810	-				-0.6
2,881,810	-				-3.1
2,881,818	+				+0.5
2,881,819	-				-1.0
2,881,819	-				-0.8
2,881,821	+				-0.6
2,881,823	+				-1.5
2,881,823	+				+1.5
2,881,823	+				+0.0
2,881,823	+				+0.6
2,881,824	-				+0.6
2,881,824	-				+0.2
2,881,824	-				-0.5
2,881,825	+				+0.0
2,881,826	-				-0.4
2,881,913	+		ABZR87_RS13630	0.34	+0.5
2,881,913	+		ABZR87_RS13630	0.34	-1.3
2,881,913	+		ABZR87_RS13630	0.34	+0.7
2,881,913	+		ABZR87_RS13630	0.34	-0.3
2,881,913	+		ABZR87_RS13630	0.34	-0.3
2,881,913	+		ABZR87_RS13630	0.34	-0.9
2,881,914	-		ABZR87_RS13630	0.34	+0.1
2,881,914	-		ABZR87_RS13630	0.34	-0.5
2,881,914	-		ABZR87_RS13630	0.34	+2.4
2,881,957	+		ABZR87_RS13630	0.48	+0.2
2,881,958	-		ABZR87_RS13630	0.48	+0.6
2,881,958	-		ABZR87_RS13630	0.48	-0.1
2,882,050	+		ABZR87_RS13630	0.78	+0.5
2,882,070	+		ABZR87_RS13630	0.84	-1.4
2,882,070	+		ABZR87_RS13630	0.84	-0.4
2,882,070	+		ABZR87_RS13630	0.84	+0.9
2,882,071	-		ABZR87_RS13630	0.84	+0.9
2,882,130	+				-0.5
2,882,131	-				-0.4
2,882,196	+				-1.6
2,882,196	+				-0.9
2,882,197	-				+0.6
2,882,402	-		ABZR87_RS13635	0.44	+3.8
2,882,411	+		ABZR87_RS13635	0.46	+0.3
2,882,411	+		ABZR87_RS13635	0.46	-0.0
2,882,411	+		ABZR87_RS13635	0.46	-0.8
2,882,412	-		ABZR87_RS13635	0.46	+0.4
2,882,412	-		ABZR87_RS13635	0.46	-0.2
2,882,412	-		ABZR87_RS13635	0.46	+0.8
2,882,412	-		ABZR87_RS13635	0.46	-0.0
2,882,415	+		ABZR87_RS13635	0.47	+1.0
2,882,416	-		ABZR87_RS13635	0.47	+0.2
2,882,428	+		ABZR87_RS13635	0.49	-0.1
2,882,428	+		ABZR87_RS13635	0.49	-0.2
2,882,429	-		ABZR87_RS13635	0.49	+0.4
2,882,429	-		ABZR87_RS13635	0.49	+1.0
2,882,429	-		ABZR87_RS13635	0.49	+1.0
2,882,429	-		ABZR87_RS13635	0.49	-0.9
2,882,429	-		ABZR87_RS13635	0.49	+0.5
2,882,429	-		ABZR87_RS13635	0.49	-2.0
2,882,485	+		ABZR87_RS13635	0.60	-0.8
2,882,485	+		ABZR87_RS13635	0.60	+0.6
2,882,485	+		ABZR87_RS13635	0.60	-1.8
2,882,486	-		ABZR87_RS13635	0.60	-0.3
2,882,486	-		ABZR87_RS13635	0.60	+0.4
2,882,486	-		ABZR87_RS13635	0.60	+2.0
2,882,498	-		ABZR87_RS13635	0.62	+2.4
2,882,511	+		ABZR87_RS13635	0.64	+0.6
2,882,666	+				+0.0
2,882,746	+				-0.8
2,882,747	-				-0.2
2,882,747	-				-0.5