Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10420

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10410 and ABZR87_RS10415 are separated by 20 nucleotidesABZR87_RS10415 and ABZR87_RS10420 are separated by 98 nucleotidesABZR87_RS10420 and ABZR87_RS10425 are separated by 9 nucleotides ABZR87_RS10410: ABZR87_RS10410 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,205,758 to 2,206,486 _RS10410 ABZR87_RS10415: ABZR87_RS10415 - DUF2845 domain-containing protein, at 2,206,507 to 2,206,812 _RS10415 ABZR87_RS10420: ABZR87_RS10420 - TatD family hydrolase, at 2,206,911 to 2,207,723 _RS10420 ABZR87_RS10425: ABZR87_RS10425 - DNA internalization-related competence protein ComEC/Rec2, at 2,207,733 to 2,210,255 _RS10425 Position (kb) 2206 2207 2208Strain fitness (log2 ratio) -1 0 1 2 3at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.720 kb on - strand, within ABZR87_RS10415at 2206.720 kb on - strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.838 kb on + strandat 2206.839 kb on - strandat 2206.857 kb on + strandat 2206.857 kb on + strandat 2206.857 kb on + strandat 2206.857 kb on + strandat 2207.082 kb on + strand, within ABZR87_RS10420at 2207.226 kb on + strand, within ABZR87_RS10420at 2207.227 kb on - strand, within ABZR87_RS10420at 2207.448 kb on - strand, within ABZR87_RS10420at 2207.640 kb on - strand, within ABZR87_RS10420at 2207.640 kb on - strand, within ABZR87_RS10420at 2208.108 kb on + strand, within ABZR87_RS10425at 2208.109 kb on - strand, within ABZR87_RS10425at 2208.264 kb on + strand, within ABZR87_RS10425at 2208.300 kb on + strand, within ABZR87_RS10425at 2208.300 kb on + strand, within ABZR87_RS10425at 2208.301 kb on - strand, within ABZR87_RS10425at 2208.403 kb on + strand, within ABZR87_RS10425

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,206,595 + ABZR87_RS10415 0.29 -0.9
2,206,595 + ABZR87_RS10415 0.29 +1.6
2,206,595 + ABZR87_RS10415 0.29 -0.3
2,206,596 - ABZR87_RS10415 0.29 +0.2
2,206,596 - ABZR87_RS10415 0.29 -1.4
2,206,596 - ABZR87_RS10415 0.29 +0.6
2,206,596 - ABZR87_RS10415 0.29 +0.6
2,206,596 - ABZR87_RS10415 0.29 -0.6
2,206,596 - ABZR87_RS10415 0.29 +0.3
2,206,596 - ABZR87_RS10415 0.29 +0.1
2,206,596 - ABZR87_RS10415 0.29 +0.1
2,206,596 - ABZR87_RS10415 0.29 -0.3
2,206,596 - ABZR87_RS10415 0.29 -0.7
2,206,596 - ABZR87_RS10415 0.29 -0.2
2,206,596 - ABZR87_RS10415 0.29 -0.7
2,206,720 - ABZR87_RS10415 0.70 +1.8
2,206,720 - ABZR87_RS10415 0.70 -0.6
2,206,721 + ABZR87_RS10415 0.70 -0.2
2,206,721 + ABZR87_RS10415 0.70 +1.9
2,206,721 + ABZR87_RS10415 0.70 +3.3
2,206,838 + +0.4
2,206,839 - -0.9
2,206,857 + +0.3
2,206,857 + -0.9
2,206,857 + -0.7
2,206,857 + -0.3
2,207,082 + ABZR87_RS10420 0.21 -0.7
2,207,226 + ABZR87_RS10420 0.39 -0.5
2,207,227 - ABZR87_RS10420 0.39 -0.4
2,207,448 - ABZR87_RS10420 0.66 -0.2
2,207,640 - ABZR87_RS10420 0.90 +0.2
2,207,640 - ABZR87_RS10420 0.90 +0.2
2,208,108 + ABZR87_RS10425 0.15 +2.0
2,208,109 - ABZR87_RS10425 0.15 +0.1
2,208,264 + ABZR87_RS10425 0.21 +0.3
2,208,300 + ABZR87_RS10425 0.22 -1.3
2,208,300 + ABZR87_RS10425 0.22 +0.0
2,208,301 - ABZR87_RS10425 0.23 +1.0
2,208,403 + ABZR87_RS10425 0.27 -0.0

Or see this region's nucleotide sequence