Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10250

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10245 and ABZR87_RS10250 are separated by 67 nucleotidesABZR87_RS10250 and ABZR87_RS10255 are separated by 136 nucleotidesABZR87_RS10255 and ABZR87_RS10260 are separated by 53 nucleotidesABZR87_RS10260 and ABZR87_RS10265 are separated by 92 nucleotidesABZR87_RS10265 and ABZR87_RS10270 are separated by 169 nucleotides ABZR87_RS10245: ABZR87_RS10245 - excinuclease ABC subunit UvrC, at 2,172,001 to 2,173,974 _RS10245 ABZR87_RS10250: ABZR87_RS10250 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,174,042 to 2,174,617 _RS10250 ABZR87_RS10255: ABZR87_RS10255 - tRNA-Gly, at 2,174,754 to 2,174,829 _RS10255 ABZR87_RS10260: ABZR87_RS10260 - tRNA-Gly, at 2,174,883 to 2,174,958 _RS10260 ABZR87_RS10265: ABZR87_RS10265 - tRNA-Cys, at 2,175,051 to 2,175,124 _RS10265 ABZR87_RS10270: ABZR87_RS10270 - hypothetical protein, at 2,175,294 to 2,176,976 _RS10270 Position (kb) 2174 2175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2173.055 kb on - strand, within ABZR87_RS10245at 2173.055 kb on - strand, within ABZR87_RS10245at 2173.055 kb on - strand, within ABZR87_RS10245at 2173.103 kb on + strand, within ABZR87_RS10245at 2173.266 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.456 kb on + strand, within ABZR87_RS10245at 2173.457 kb on - strand, within ABZR87_RS10245at 2173.957 kb on + strandat 2173.957 kb on + strandat 2173.958 kb on - strandat 2174.002 kb on + strandat 2174.729 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.838 kb on + strandat 2174.838 kb on + strandat 2174.838 kb on + strandat 2175.029 kb on + strandat 2175.172 kb on + strandat 2175.172 kb on + strandat 2175.172 kb on + strandat 2175.172 kb on + strandat 2175.173 kb on - strandat 2175.173 kb on - strandat 2175.173 kb on - strandat 2175.173 kb on - strandat 2175.192 kb on - strandat 2175.192 kb on - strandat 2175.237 kb on + strandat 2175.237 kb on + strandat 2175.238 kb on - strandat 2175.296 kb on - strandat 2175.358 kb on + strandat 2175.358 kb on + strandat 2175.359 kb on - strandat 2175.359 kb on - strandat 2175.362 kb on + strandat 2175.362 kb on + strandat 2175.362 kb on + strandat 2175.414 kb on - strandat 2175.471 kb on + strand, within ABZR87_RS10270at 2175.508 kb on + strand, within ABZR87_RS10270at 2175.528 kb on - strand, within ABZR87_RS10270

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,173,055 - ABZR87_RS10245 0.53 +2.9
2,173,055 - ABZR87_RS10245 0.53 +1.5
2,173,055 - ABZR87_RS10245 0.53 -0.4
2,173,103 + ABZR87_RS10245 0.56 -1.6
2,173,266 + ABZR87_RS10245 0.64 -1.4
2,173,423 + ABZR87_RS10245 0.72 +0.1
2,173,423 + ABZR87_RS10245 0.72 -1.9
2,173,423 + ABZR87_RS10245 0.72 -1.2
2,173,423 + ABZR87_RS10245 0.72 -0.8
2,173,456 + ABZR87_RS10245 0.74 +0.5
2,173,457 - ABZR87_RS10245 0.74 -0.1
2,173,957 + -0.3
2,173,957 + -2.9
2,173,958 - -1.8
2,174,002 + +0.3
2,174,729 + -0.3
2,174,761 + -0.0
2,174,761 + -1.0
2,174,761 + +0.3
2,174,761 + -1.3
2,174,761 + +0.0
2,174,838 + +1.0
2,174,838 + -1.7
2,174,838 + +1.3
2,175,029 + +0.4
2,175,172 + -0.1
2,175,172 + +1.2
2,175,172 + -1.3
2,175,172 + -1.4
2,175,173 - -0.5
2,175,173 - -0.8
2,175,173 - -0.4
2,175,173 - +0.9
2,175,192 - +0.2
2,175,192 - +0.5
2,175,237 + -0.1
2,175,237 + -1.5
2,175,238 - -0.5
2,175,296 - +1.3
2,175,358 + +0.0
2,175,358 + +1.7
2,175,359 - -0.0
2,175,359 - +0.5
2,175,362 + +1.3
2,175,362 + -0.9
2,175,362 + +0.5
2,175,414 - +0.8
2,175,471 + ABZR87_RS10270 0.11 -0.6
2,175,508 + ABZR87_RS10270 0.13 +2.9
2,175,528 - ABZR87_RS10270 0.14 -0.8

Or see this region's nucleotide sequence