Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08355

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08350 and ABZR87_RS08355 are separated by 24 nucleotidesABZR87_RS08355 and ABZR87_RS08360 are separated by 245 nucleotides ABZR87_RS08350: ABZR87_RS08350 - hypothetical protein, at 1,775,869 to 1,777,131 _RS08350 ABZR87_RS08355: ABZR87_RS08355 - GGDEF domain-containing protein, at 1,777,156 to 1,778,658 _RS08355 ABZR87_RS08360: ABZR87_RS08360 - NmrA family NAD(P)-binding protein, at 1,778,904 to 1,779,767 _RS08360 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1776.166 kb on - strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.239 kb on - strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.263 kb on - strand, within ABZR87_RS08350at 1776.263 kb on - strand, within ABZR87_RS08350at 1776.263 kb on - strand, within ABZR87_RS08350at 1776.271 kb on + strand, within ABZR87_RS08350at 1776.271 kb on + strand, within ABZR87_RS08350at 1776.271 kb on + strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.322 kb on + strand, within ABZR87_RS08350at 1776.322 kb on + strand, within ABZR87_RS08350at 1776.388 kb on + strand, within ABZR87_RS08350at 1776.388 kb on + strand, within ABZR87_RS08350at 1776.388 kb on + strand, within ABZR87_RS08350at 1776.389 kb on - strand, within ABZR87_RS08350at 1776.412 kb on + strand, within ABZR87_RS08350at 1776.412 kb on + strand, within ABZR87_RS08350at 1776.412 kb on + strand, within ABZR87_RS08350at 1776.412 kb on + strand, within ABZR87_RS08350at 1776.412 kb on + strand, within ABZR87_RS08350at 1776.413 kb on - strand, within ABZR87_RS08350at 1776.413 kb on - strand, within ABZR87_RS08350at 1776.413 kb on - strand, within ABZR87_RS08350at 1776.475 kb on + strand, within ABZR87_RS08350at 1776.475 kb on + strand, within ABZR87_RS08350at 1776.475 kb on + strand, within ABZR87_RS08350at 1776.476 kb on - strand, within ABZR87_RS08350at 1776.789 kb on + strand, within ABZR87_RS08350at 1776.789 kb on + strand, within ABZR87_RS08350at 1776.796 kb on + strand, within ABZR87_RS08350at 1776.797 kb on - strand, within ABZR87_RS08350at 1776.797 kb on - strand, within ABZR87_RS08350at 1776.850 kb on + strand, within ABZR87_RS08350at 1776.952 kb on + strand, within ABZR87_RS08350at 1776.973 kb on + strand, within ABZR87_RS08350at 1776.997 kb on + strand, within ABZR87_RS08350at 1776.998 kb on - strand, within ABZR87_RS08350at 1776.998 kb on - strand, within ABZR87_RS08350at 1777.012 kb on - strandat 1777.045 kb on + strandat 1777.046 kb on - strandat 1777.100 kb on - strandat 1777.100 kb on - strandat 1777.130 kb on - strandat 1777.157 kb on + strandat 1777.158 kb on - strandat 1777.172 kb on + strandat 1777.208 kb on + strandat 1777.209 kb on - strandat 1777.209 kb on - strandat 1777.209 kb on - strandat 1777.481 kb on + strand, within ABZR87_RS08355at 1777.526 kb on + strand, within ABZR87_RS08355at 1777.526 kb on + strand, within ABZR87_RS08355at 1777.526 kb on + strand, within ABZR87_RS08355at 1777.527 kb on - strand, within ABZR87_RS08355at 1777.527 kb on - strand, within ABZR87_RS08355at 1777.527 kb on - strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.863 kb on + strand, within ABZR87_RS08355at 1777.864 kb on - strand, within ABZR87_RS08355at 1777.864 kb on - strand, within ABZR87_RS08355at 1777.864 kb on - strand, within ABZR87_RS08355at 1777.865 kb on + strand, within ABZR87_RS08355at 1777.865 kb on + strand, within ABZR87_RS08355at 1777.866 kb on - strand, within ABZR87_RS08355at 1777.904 kb on + strand, within ABZR87_RS08355at 1777.905 kb on - strand, within ABZR87_RS08355at 1777.905 kb on - strand, within ABZR87_RS08355at 1777.905 kb on - strand, within ABZR87_RS08355at 1777.905 kb on - strand, within ABZR87_RS08355at 1777.905 kb on - strand, within ABZR87_RS08355at 1777.905 kb on - strand, within ABZR87_RS08355at 1778.075 kb on + strand, within ABZR87_RS08355at 1778.076 kb on - strand, within ABZR87_RS08355at 1778.184 kb on - strand, within ABZR87_RS08355at 1778.184 kb on - strand, within ABZR87_RS08355at 1778.184 kb on - strand, within ABZR87_RS08355at 1778.198 kb on + strand, within ABZR87_RS08355at 1778.198 kb on + strand, within ABZR87_RS08355at 1778.199 kb on - strand, within ABZR87_RS08355at 1778.199 kb on - strand, within ABZR87_RS08355at 1778.199 kb on - strand, within ABZR87_RS08355at 1778.331 kb on - strand, within ABZR87_RS08355at 1778.713 kb on + strandat 1778.713 kb on + strandat 1778.713 kb on + strandat 1778.725 kb on + strandat 1778.725 kb on + strandat 1778.726 kb on - strandat 1778.726 kb on - strandat 1778.734 kb on + strandat 1778.734 kb on + strandat 1778.735 kb on - strandat 1778.735 kb on - strandat 1778.740 kb on + strandat 1778.740 kb on + strandat 1778.740 kb on + strandat 1778.740 kb on + strandat 1778.740 kb on + strandat 1778.740 kb on + strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.741 kb on - strandat 1778.746 kb on + strandat 1778.746 kb on + strandat 1778.747 kb on - strandat 1778.935 kb on + strandat 1779.013 kb on + strand, within ABZR87_RS08360at 1779.014 kb on - strand, within ABZR87_RS08360at 1779.014 kb on - strand, within ABZR87_RS08360at 1779.014 kb on - strand, within ABZR87_RS08360at 1779.014 kb on - strand, within ABZR87_RS08360at 1779.040 kb on + strand, within ABZR87_RS08360at 1779.041 kb on - strand, within ABZR87_RS08360at 1779.106 kb on + strand, within ABZR87_RS08360at 1779.307 kb on + strand, within ABZR87_RS08360at 1779.308 kb on - strand, within ABZR87_RS08360at 1779.448 kb on - strand, within ABZR87_RS08360at 1779.478 kb on + strand, within ABZR87_RS08360at 1779.478 kb on + strand, within ABZR87_RS08360at 1779.478 kb on + strand, within ABZR87_RS08360at 1779.478 kb on + strand, within ABZR87_RS08360at 1779.478 kb on + strand, within ABZR87_RS08360at 1779.479 kb on - strand, within ABZR87_RS08360at 1779.479 kb on - strand, within ABZR87_RS08360at 1779.479 kb on - strand, within ABZR87_RS08360at 1779.479 kb on - strand, within ABZR87_RS08360at 1779.479 kb on - strand, within ABZR87_RS08360at 1779.479 kb on - strand, within ABZR87_RS08360

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,776,166 - ABZR87_RS08350 0.24 +5.5
1,776,205 + ABZR87_RS08350 0.27 -0.4
1,776,205 + ABZR87_RS08350 0.27 +0.3
1,776,205 + ABZR87_RS08350 0.27 -2.0
1,776,205 + ABZR87_RS08350 0.27 +0.9
1,776,206 - ABZR87_RS08350 0.27 -2.3
1,776,206 - ABZR87_RS08350 0.27 +1.0
1,776,206 - ABZR87_RS08350 0.27 -1.4
1,776,206 - ABZR87_RS08350 0.27 +0.2
1,776,239 - ABZR87_RS08350 0.29 +0.2
1,776,262 + ABZR87_RS08350 0.31 -0.1
1,776,262 + ABZR87_RS08350 0.31 +0.0
1,776,262 + ABZR87_RS08350 0.31 +0.9
1,776,262 + ABZR87_RS08350 0.31 +0.1
1,776,262 + ABZR87_RS08350 0.31 +1.3
1,776,262 + ABZR87_RS08350 0.31 +1.3
1,776,263 - ABZR87_RS08350 0.31 -0.8
1,776,263 - ABZR87_RS08350 0.31 -1.3
1,776,263 - ABZR87_RS08350 0.31 -0.0
1,776,271 + ABZR87_RS08350 0.32 +0.2
1,776,271 + ABZR87_RS08350 0.32 -0.3
1,776,271 + ABZR87_RS08350 0.32 -1.2
1,776,272 - ABZR87_RS08350 0.32 +0.6
1,776,272 - ABZR87_RS08350 0.32 +1.3
1,776,272 - ABZR87_RS08350 0.32 +0.0
1,776,272 - ABZR87_RS08350 0.32 +1.9
1,776,296 - ABZR87_RS08350 0.34 +0.3
1,776,296 - ABZR87_RS08350 0.34 -0.1
1,776,296 - ABZR87_RS08350 0.34 +0.1
1,776,296 - ABZR87_RS08350 0.34 +1.2
1,776,322 + ABZR87_RS08350 0.36 -0.5
1,776,322 + ABZR87_RS08350 0.36 -0.9
1,776,388 + ABZR87_RS08350 0.41 +2.5
1,776,388 + ABZR87_RS08350 0.41 -0.1
1,776,388 + ABZR87_RS08350 0.41 -0.6
1,776,389 - ABZR87_RS08350 0.41 +0.9
1,776,412 + ABZR87_RS08350 0.43 +1.0
1,776,412 + ABZR87_RS08350 0.43 -1.0
1,776,412 + ABZR87_RS08350 0.43 +0.4
1,776,412 + ABZR87_RS08350 0.43 +0.8
1,776,412 + ABZR87_RS08350 0.43 -0.4
1,776,413 - ABZR87_RS08350 0.43 -0.3
1,776,413 - ABZR87_RS08350 0.43 +0.9
1,776,413 - ABZR87_RS08350 0.43 -0.1
1,776,475 + ABZR87_RS08350 0.48 +0.3
1,776,475 + ABZR87_RS08350 0.48 -1.1
1,776,475 + ABZR87_RS08350 0.48 -1.3
1,776,476 - ABZR87_RS08350 0.48 +0.5
1,776,789 + ABZR87_RS08350 0.73 +0.6
1,776,789 + ABZR87_RS08350 0.73 -0.3
1,776,796 + ABZR87_RS08350 0.73 -0.8
1,776,797 - ABZR87_RS08350 0.73 +0.1
1,776,797 - ABZR87_RS08350 0.73 +2.5
1,776,850 + ABZR87_RS08350 0.78 -1.7
1,776,952 + ABZR87_RS08350 0.86 -0.1
1,776,973 + ABZR87_RS08350 0.87 -0.4
1,776,997 + ABZR87_RS08350 0.89 +0.4
1,776,998 - ABZR87_RS08350 0.89 -0.4
1,776,998 - ABZR87_RS08350 0.89 +0.3
1,777,012 - -2.0
1,777,045 + +0.6
1,777,046 - -0.5
1,777,100 - -0.2
1,777,100 - +0.6
1,777,130 - -0.5
1,777,157 + +0.6
1,777,158 - -0.4
1,777,172 + -1.0
1,777,208 + -1.6
1,777,209 - +0.4
1,777,209 - -0.4
1,777,209 - +0.7
1,777,481 + ABZR87_RS08355 0.22 -1.7
1,777,526 + ABZR87_RS08355 0.25 -1.4
1,777,526 + ABZR87_RS08355 0.25 -0.4
1,777,526 + ABZR87_RS08355 0.25 +0.4
1,777,527 - ABZR87_RS08355 0.25 +2.3
1,777,527 - ABZR87_RS08355 0.25 +2.9
1,777,527 - ABZR87_RS08355 0.25 +5.9
1,777,863 + ABZR87_RS08355 0.47 -0.5
1,777,863 + ABZR87_RS08355 0.47 +0.4
1,777,863 + ABZR87_RS08355 0.47 -0.0
1,777,863 + ABZR87_RS08355 0.47 +5.4
1,777,863 + ABZR87_RS08355 0.47 -0.4
1,777,863 + ABZR87_RS08355 0.47 -0.4
1,777,863 + ABZR87_RS08355 0.47 -2.0
1,777,864 - ABZR87_RS08355 0.47 +0.9
1,777,864 - ABZR87_RS08355 0.47 -0.0
1,777,864 - ABZR87_RS08355 0.47 +0.9
1,777,865 + ABZR87_RS08355 0.47 +2.9
1,777,865 + ABZR87_RS08355 0.47 -0.7
1,777,866 - ABZR87_RS08355 0.47 -0.2
1,777,904 + ABZR87_RS08355 0.50 -0.7
1,777,905 - ABZR87_RS08355 0.50 -0.2
1,777,905 - ABZR87_RS08355 0.50 +0.4
1,777,905 - ABZR87_RS08355 0.50 -1.0
1,777,905 - ABZR87_RS08355 0.50 -0.1
1,777,905 - ABZR87_RS08355 0.50 -0.7
1,777,905 - ABZR87_RS08355 0.50 +3.6
1,778,075 + ABZR87_RS08355 0.61 +0.1
1,778,076 - ABZR87_RS08355 0.61 -0.7
1,778,184 - ABZR87_RS08355 0.68 -0.7
1,778,184 - ABZR87_RS08355 0.68 -1.1
1,778,184 - ABZR87_RS08355 0.68 +0.9
1,778,198 + ABZR87_RS08355 0.69 +0.5
1,778,198 + ABZR87_RS08355 0.69 -0.3
1,778,199 - ABZR87_RS08355 0.69 -0.5
1,778,199 - ABZR87_RS08355 0.69 +0.5
1,778,199 - ABZR87_RS08355 0.69 +0.0
1,778,331 - ABZR87_RS08355 0.78 +0.1
1,778,713 + -0.1
1,778,713 + +0.4
1,778,713 + -0.2
1,778,725 + +0.0
1,778,725 + +0.9
1,778,726 - -0.5
1,778,726 - -1.2
1,778,734 + +0.7
1,778,734 + -1.1
1,778,735 - +0.6
1,778,735 - +0.1
1,778,740 + -0.3
1,778,740 + +0.2
1,778,740 + -0.1
1,778,740 + +0.3
1,778,740 + -0.9
1,778,740 + +1.1
1,778,741 - +1.1
1,778,741 - +0.3
1,778,741 - -0.6
1,778,741 - +0.0
1,778,741 - +0.4
1,778,741 - -0.1
1,778,741 - -0.2
1,778,741 - +0.4
1,778,741 - -0.0
1,778,741 - +0.6
1,778,746 + +2.1
1,778,746 + +0.3
1,778,747 - +1.1
1,778,935 + +2.1
1,779,013 + ABZR87_RS08360 0.13 -0.7
1,779,014 - ABZR87_RS08360 0.13 +1.0
1,779,014 - ABZR87_RS08360 0.13 +0.2
1,779,014 - ABZR87_RS08360 0.13 -2.4
1,779,014 - ABZR87_RS08360 0.13 +0.7
1,779,040 + ABZR87_RS08360 0.16 +1.5
1,779,041 - ABZR87_RS08360 0.16 +0.5
1,779,106 + ABZR87_RS08360 0.23 +0.3
1,779,307 + ABZR87_RS08360 0.47 -2.6
1,779,308 - ABZR87_RS08360 0.47 +3.9
1,779,448 - ABZR87_RS08360 0.63 -1.4
1,779,478 + ABZR87_RS08360 0.66 +0.9
1,779,478 + ABZR87_RS08360 0.66 +0.0
1,779,478 + ABZR87_RS08360 0.66 -1.1
1,779,478 + ABZR87_RS08360 0.66 +0.6
1,779,478 + ABZR87_RS08360 0.66 +0.2
1,779,479 - ABZR87_RS08360 0.67 +2.3
1,779,479 - ABZR87_RS08360 0.67 -0.1
1,779,479 - ABZR87_RS08360 0.67 +0.2
1,779,479 - ABZR87_RS08360 0.67 -3.2
1,779,479 - ABZR87_RS08360 0.67 -0.3
1,779,479 - ABZR87_RS08360 0.67 +1.5

Or see this region's nucleotide sequence