Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07225

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07215 and ABZR87_RS07220 overlap by 4 nucleotidesABZR87_RS07220 and ABZR87_RS07225 overlap by 4 nucleotidesABZR87_RS07225 and ABZR87_RS07230 are separated by 72 nucleotidesABZR87_RS07230 and ABZR87_RS07235 overlap by 4 nucleotides ABZR87_RS07215: ABZR87_RS07215 - hotdog family protein, at 1,529,092 to 1,529,553 _RS07215 ABZR87_RS07220: ABZR87_RS07220 - beta-ketoacyl synthase chain length factor, at 1,529,550 to 1,530,353 _RS07220 ABZR87_RS07225: ABZR87_RS07225 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 1,530,350 to 1,531,567 _RS07225 ABZR87_RS07230: ABZR87_RS07230 - polysaccharide deacetylase family protein, at 1,531,640 to 1,532,503 _RS07230 ABZR87_RS07235: ABZR87_RS07235 - MMPL family transporter, at 1,532,500 to 1,534,920 _RS07235 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1529.351 kb on + strand, within ABZR87_RS07215at 1529.352 kb on - strand, within ABZR87_RS07215at 1529.352 kb on - strand, within ABZR87_RS07215at 1529.599 kb on + strandat 1529.599 kb on + strandat 1529.600 kb on - strandat 1529.600 kb on - strandat 1529.600 kb on - strandat 1529.600 kb on - strandat 1529.696 kb on + strand, within ABZR87_RS07220at 1529.697 kb on - strand, within ABZR87_RS07220at 1529.781 kb on + strand, within ABZR87_RS07220at 1529.781 kb on + strand, within ABZR87_RS07220at 1529.782 kb on - strand, within ABZR87_RS07220at 1529.801 kb on + strand, within ABZR87_RS07220at 1529.851 kb on + strand, within ABZR87_RS07220at 1529.852 kb on - strand, within ABZR87_RS07220at 1529.984 kb on - strand, within ABZR87_RS07220at 1530.077 kb on + strand, within ABZR87_RS07220at 1530.077 kb on + strand, within ABZR87_RS07220at 1530.077 kb on + strand, within ABZR87_RS07220at 1530.078 kb on - strand, within ABZR87_RS07220at 1530.078 kb on - strand, within ABZR87_RS07220at 1530.253 kb on + strand, within ABZR87_RS07220at 1530.253 kb on + strand, within ABZR87_RS07220at 1530.253 kb on + strand, within ABZR87_RS07220at 1530.254 kb on - strand, within ABZR87_RS07220at 1530.468 kb on + strandat 1530.468 kb on + strandat 1530.468 kb on + strandat 1530.533 kb on + strand, within ABZR87_RS07225at 1530.534 kb on - strand, within ABZR87_RS07225at 1530.547 kb on + strand, within ABZR87_RS07225at 1530.548 kb on - strand, within ABZR87_RS07225at 1530.548 kb on - strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.697 kb on - strand, within ABZR87_RS07225at 1530.697 kb on - strand, within ABZR87_RS07225at 1530.907 kb on + strand, within ABZR87_RS07225at 1530.907 kb on + strand, within ABZR87_RS07225at 1530.908 kb on - strand, within ABZR87_RS07225at 1530.908 kb on - strand, within ABZR87_RS07225at 1530.908 kb on - strand, within ABZR87_RS07225at 1530.927 kb on + strand, within ABZR87_RS07225at 1530.928 kb on - strand, within ABZR87_RS07225at 1530.928 kb on - strand, within ABZR87_RS07225at 1530.975 kb on + strand, within ABZR87_RS07225at 1530.976 kb on - strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.153 kb on - strand, within ABZR87_RS07225at 1531.221 kb on + strand, within ABZR87_RS07225at 1531.221 kb on + strand, within ABZR87_RS07225at 1531.222 kb on - strand, within ABZR87_RS07225at 1531.222 kb on - strand, within ABZR87_RS07225at 1531.268 kb on + strand, within ABZR87_RS07225at 1531.268 kb on + strand, within ABZR87_RS07225at 1531.268 kb on + strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.628 kb on + strandat 1531.628 kb on + strandat 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1532.068 kb on + strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.187 kb on + strand, within ABZR87_RS07230

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,529,351 + ABZR87_RS07215 0.56 +0.7
1,529,352 - ABZR87_RS07215 0.56 +1.0
1,529,352 - ABZR87_RS07215 0.56 -0.3
1,529,599 + +1.6
1,529,599 + -1.9
1,529,600 - +0.9
1,529,600 - +1.9
1,529,600 - +1.6
1,529,600 - -0.1
1,529,696 + ABZR87_RS07220 0.18 +1.7
1,529,697 - ABZR87_RS07220 0.18 -0.5
1,529,781 + ABZR87_RS07220 0.29 -0.4
1,529,781 + ABZR87_RS07220 0.29 +1.0
1,529,782 - ABZR87_RS07220 0.29 -0.4
1,529,801 + ABZR87_RS07220 0.31 +0.1
1,529,851 + ABZR87_RS07220 0.37 +2.0
1,529,852 - ABZR87_RS07220 0.38 -0.6
1,529,984 - ABZR87_RS07220 0.54 -0.4
1,530,077 + ABZR87_RS07220 0.66 -0.0
1,530,077 + ABZR87_RS07220 0.66 -0.3
1,530,077 + ABZR87_RS07220 0.66 -0.6
1,530,078 - ABZR87_RS07220 0.66 +0.5
1,530,078 - ABZR87_RS07220 0.66 +0.7
1,530,253 + ABZR87_RS07220 0.87 +0.1
1,530,253 + ABZR87_RS07220 0.87 +0.6
1,530,253 + ABZR87_RS07220 0.87 -0.2
1,530,254 - ABZR87_RS07220 0.88 +1.1
1,530,468 + -0.5
1,530,468 + -0.1
1,530,468 + -1.1
1,530,533 + ABZR87_RS07225 0.15 +0.2
1,530,534 - ABZR87_RS07225 0.15 +0.2
1,530,547 + ABZR87_RS07225 0.16 -1.2
1,530,548 - ABZR87_RS07225 0.16 +0.2
1,530,548 - ABZR87_RS07225 0.16 +0.2
1,530,696 + ABZR87_RS07225 0.28 -0.6
1,530,696 + ABZR87_RS07225 0.28 -1.7
1,530,696 + ABZR87_RS07225 0.28 +0.4
1,530,696 + ABZR87_RS07225 0.28 -0.2
1,530,696 + ABZR87_RS07225 0.28 +0.9
1,530,697 - ABZR87_RS07225 0.28 -0.6
1,530,697 - ABZR87_RS07225 0.28 +0.8
1,530,907 + ABZR87_RS07225 0.46 +5.3
1,530,907 + ABZR87_RS07225 0.46 -1.0
1,530,908 - ABZR87_RS07225 0.46 -0.4
1,530,908 - ABZR87_RS07225 0.46 -1.7
1,530,908 - ABZR87_RS07225 0.46 +0.3
1,530,927 + ABZR87_RS07225 0.47 +0.3
1,530,928 - ABZR87_RS07225 0.47 +0.9
1,530,928 - ABZR87_RS07225 0.47 -0.2
1,530,975 + ABZR87_RS07225 0.51 +0.8
1,530,976 - ABZR87_RS07225 0.51 +0.8
1,531,125 + ABZR87_RS07225 0.64 -0.3
1,531,125 + ABZR87_RS07225 0.64 -0.5
1,531,125 + ABZR87_RS07225 0.64 -0.1
1,531,125 + ABZR87_RS07225 0.64 -0.5
1,531,126 - ABZR87_RS07225 0.64 +0.3
1,531,126 - ABZR87_RS07225 0.64 +0.5
1,531,126 - ABZR87_RS07225 0.64 +0.2
1,531,126 - ABZR87_RS07225 0.64 +0.8
1,531,152 + ABZR87_RS07225 0.66 -0.7
1,531,152 + ABZR87_RS07225 0.66 -1.4
1,531,152 + ABZR87_RS07225 0.66 +0.2
1,531,152 + ABZR87_RS07225 0.66 -2.3
1,531,152 + ABZR87_RS07225 0.66 -1.3
1,531,152 + ABZR87_RS07225 0.66 -0.0
1,531,153 - ABZR87_RS07225 0.66 +0.5
1,531,221 + ABZR87_RS07225 0.72 -0.2
1,531,221 + ABZR87_RS07225 0.72 +0.1
1,531,222 - ABZR87_RS07225 0.72 +0.9
1,531,222 - ABZR87_RS07225 0.72 -1.5
1,531,268 + ABZR87_RS07225 0.75 -1.1
1,531,268 + ABZR87_RS07225 0.75 +0.6
1,531,268 + ABZR87_RS07225 0.75 -0.3
1,531,269 - ABZR87_RS07225 0.75 +0.1
1,531,269 - ABZR87_RS07225 0.75 -0.2
1,531,269 - ABZR87_RS07225 0.75 +0.8
1,531,269 - ABZR87_RS07225 0.75 -0.0
1,531,269 - ABZR87_RS07225 0.75 +6.0
1,531,628 + -0.6
1,531,628 + -0.7
1,531,808 + ABZR87_RS07230 0.19 -0.4
1,531,808 + ABZR87_RS07230 0.19 -0.3
1,531,808 + ABZR87_RS07230 0.19 -0.1
1,531,808 + ABZR87_RS07230 0.19 +0.9
1,531,809 - ABZR87_RS07230 0.20 -0.5
1,531,809 - ABZR87_RS07230 0.20 -0.6
1,531,809 - ABZR87_RS07230 0.20 +0.1
1,531,809 - ABZR87_RS07230 0.20 -0.3
1,532,068 + ABZR87_RS07230 0.50 -0.4
1,532,069 - ABZR87_RS07230 0.50 +0.1
1,532,069 - ABZR87_RS07230 0.50 -0.9
1,532,069 - ABZR87_RS07230 0.50 +1.0
1,532,187 + ABZR87_RS07230 0.63 +0.5

Or see this region's nucleotide sequence