Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06385

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06370 and ABZR87_RS06375 are separated by 31 nucleotidesABZR87_RS06375 and ABZR87_RS06380 are separated by 141 nucleotidesABZR87_RS06380 and ABZR87_RS06385 are separated by 219 nucleotidesABZR87_RS06385 and ABZR87_RS06390 are separated by 85 nucleotidesABZR87_RS06390 and ABZR87_RS06395 are separated by 72 nucleotidesABZR87_RS06395 and ABZR87_RS06400 are separated by 101 nucleotides ABZR87_RS06370: ABZR87_RS06370 - ferritin-like domain-containing protein, at 1,360,047 to 1,360,604 _RS06370 ABZR87_RS06375: ABZR87_RS06375 - DUF883 family protein, at 1,360,636 to 1,361,061 _RS06375 ABZR87_RS06380: ABZR87_RS06380 - DUF1328 family protein, at 1,361,203 to 1,361,376 _RS06380 ABZR87_RS06385: ABZR87_RS06385 - CHASE3 domain-containing protein, at 1,361,596 to 1,363,038 _RS06385 ABZR87_RS06390: ABZR87_RS06390 - entericidin A/B family lipoprotein, at 1,363,124 to 1,363,264 _RS06390 ABZR87_RS06395: ABZR87_RS06395 - response regulator, at 1,363,337 to 1,363,777 _RS06395 ABZR87_RS06400: ABZR87_RS06400 - response regulator transcription factor, at 1,363,879 to 1,364,511 _RS06400 Position (kb) 1361 1362 1363 1364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1360.630 kb on + strandat 1360.630 kb on + strandat 1360.630 kb on + strandat 1360.637 kb on + strandat 1360.637 kb on + strandat 1360.638 kb on - strandat 1360.638 kb on - strandat 1360.717 kb on + strand, within ABZR87_RS06375at 1361.165 kb on + strandat 1361.166 kb on - strandat 1361.166 kb on - strandat 1361.198 kb on + strandat 1361.199 kb on - strandat 1361.219 kb on + strandat 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.261 kb on - strand, within ABZR87_RS06380at 1361.261 kb on - strand, within ABZR87_RS06380at 1361.265 kb on - strand, within ABZR87_RS06380at 1361.289 kb on + strand, within ABZR87_RS06380at 1361.316 kb on + strand, within ABZR87_RS06380at 1361.447 kb on + strandat 1361.448 kb on - strandat 1361.580 kb on + strandat 1361.701 kb on + strandat 1361.815 kb on + strand, within ABZR87_RS06385at 1361.815 kb on + strand, within ABZR87_RS06385at 1361.815 kb on + strand, within ABZR87_RS06385at 1361.815 kb on + strand, within ABZR87_RS06385at 1361.816 kb on - strand, within ABZR87_RS06385at 1361.816 kb on - strand, within ABZR87_RS06385at 1361.816 kb on - strand, within ABZR87_RS06385at 1361.827 kb on + strand, within ABZR87_RS06385at 1361.827 kb on + strand, within ABZR87_RS06385at 1361.828 kb on - strand, within ABZR87_RS06385at 1361.828 kb on - strand, within ABZR87_RS06385at 1361.828 kb on - strand, within ABZR87_RS06385at 1361.882 kb on - strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.972 kb on - strand, within ABZR87_RS06385at 1361.972 kb on - strand, within ABZR87_RS06385at 1362.282 kb on + strand, within ABZR87_RS06385at 1362.606 kb on + strand, within ABZR87_RS06385at 1362.607 kb on - strand, within ABZR87_RS06385at 1362.607 kb on - strand, within ABZR87_RS06385at 1362.607 kb on - strand, within ABZR87_RS06385at 1362.667 kb on + strand, within ABZR87_RS06385at 1362.668 kb on - strand, within ABZR87_RS06385at 1362.668 kb on - strand, within ABZR87_RS06385at 1362.706 kb on + strand, within ABZR87_RS06385at 1362.706 kb on + strand, within ABZR87_RS06385at 1362.706 kb on + strand, within ABZR87_RS06385at 1363.036 kb on + strandat 1363.037 kb on - strandat 1363.037 kb on - strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.125 kb on + strandat 1363.126 kb on - strandat 1363.126 kb on - strandat 1363.126 kb on - strandat 1363.126 kb on - strandat 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.228 kb on + strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.229 kb on - strand, within ABZR87_RS06390at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.443 kb on + strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.444 kb on - strand, within ABZR87_RS06395at 1363.503 kb on + strand, within ABZR87_RS06395at 1363.503 kb on + strand, within ABZR87_RS06395at 1363.504 kb on - strand, within ABZR87_RS06395at 1363.504 kb on - strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.602 kb on + strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.603 kb on - strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.686 kb on + strand, within ABZR87_RS06395at 1363.687 kb on - strand, within ABZR87_RS06395at 1363.687 kb on - strand, within ABZR87_RS06395at 1363.789 kb on - strandat 1363.812 kb on - strandat 1363.812 kb on - strandat 1363.812 kb on - strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.826 kb on + strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.827 kb on - strandat 1363.830 kb on + strandat 1363.830 kb on + strandat 1363.830 kb on + strandat 1363.830 kb on + strandat 1363.831 kb on - strandat 1363.831 kb on - strandat 1363.880 kb on + strandat 1363.881 kb on - strandat 1363.907 kb on + strandat 1363.907 kb on + strandat 1363.907 kb on + strandat 1363.907 kb on + strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.908 kb on - strandat 1363.910 kb on + strandat 1363.910 kb on + strandat 1363.910 kb on + strandat 1363.911 kb on - strandat 1363.911 kb on - strandat 1363.911 kb on - strandat 1363.911 kb on - strandat 1363.964 kb on + strand, within ABZR87_RS06400at 1363.965 kb on - strand, within ABZR87_RS06400at 1363.965 kb on - strand, within ABZR87_RS06400at 1363.965 kb on - strand, within ABZR87_RS06400

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,360,630 + +0.3
1,360,630 + -0.0
1,360,630 + +0.5
1,360,637 + -0.5
1,360,637 + -1.2
1,360,638 - -1.4
1,360,638 - +0.1
1,360,717 + ABZR87_RS06375 0.19 -0.3
1,361,165 + +0.6
1,361,166 - -1.0
1,361,166 - -0.4
1,361,198 + +2.6
1,361,199 - +0.5
1,361,219 + +1.4
1,361,260 + ABZR87_RS06380 0.33 +3.4
1,361,260 + ABZR87_RS06380 0.33 -0.8
1,361,260 + ABZR87_RS06380 0.33 +0.0
1,361,260 + ABZR87_RS06380 0.33 +0.7
1,361,260 + ABZR87_RS06380 0.33 +1.3
1,361,260 + ABZR87_RS06380 0.33 +0.7
1,361,260 + ABZR87_RS06380 0.33 +1.0
1,361,261 - ABZR87_RS06380 0.33 -0.1
1,361,261 - ABZR87_RS06380 0.33 -1.2
1,361,265 - ABZR87_RS06380 0.36 +0.3
1,361,289 + ABZR87_RS06380 0.49 +0.9
1,361,316 + ABZR87_RS06380 0.65 -0.4
1,361,447 + +0.9
1,361,448 - +0.4
1,361,580 + +0.4
1,361,701 + -4.4
1,361,815 + ABZR87_RS06385 0.15 -0.8
1,361,815 + ABZR87_RS06385 0.15 -2.3
1,361,815 + ABZR87_RS06385 0.15 -1.6
1,361,815 + ABZR87_RS06385 0.15 -2.0
1,361,816 - ABZR87_RS06385 0.15 -0.5
1,361,816 - ABZR87_RS06385 0.15 -1.4
1,361,816 - ABZR87_RS06385 0.15 -4.2
1,361,827 + ABZR87_RS06385 0.16 -2.0
1,361,827 + ABZR87_RS06385 0.16 -0.1
1,361,828 - ABZR87_RS06385 0.16 -1.0
1,361,828 - ABZR87_RS06385 0.16 -3.1
1,361,828 - ABZR87_RS06385 0.16 -2.3
1,361,882 - ABZR87_RS06385 0.20 -2.5
1,361,971 + ABZR87_RS06385 0.26 -3.7
1,361,971 + ABZR87_RS06385 0.26 -2.0
1,361,971 + ABZR87_RS06385 0.26 -1.8
1,361,971 + ABZR87_RS06385 0.26 -2.8
1,361,971 + ABZR87_RS06385 0.26 -3.2
1,361,972 - ABZR87_RS06385 0.26 -3.1
1,361,972 - ABZR87_RS06385 0.26 -3.3
1,362,282 + ABZR87_RS06385 0.48 -1.9
1,362,606 + ABZR87_RS06385 0.70 -1.2
1,362,607 - ABZR87_RS06385 0.70 -3.0
1,362,607 - ABZR87_RS06385 0.70 -3.0
1,362,607 - ABZR87_RS06385 0.70 -1.1
1,362,667 + ABZR87_RS06385 0.74 -2.2
1,362,668 - ABZR87_RS06385 0.74 +1.0
1,362,668 - ABZR87_RS06385 0.74 -0.3
1,362,706 + ABZR87_RS06385 0.77 +0.1
1,362,706 + ABZR87_RS06385 0.77 -4.1
1,362,706 + ABZR87_RS06385 0.77 -2.4
1,363,036 + -2.0
1,363,037 - -0.3
1,363,037 - -3.1
1,363,125 + +2.2
1,363,125 + +1.2
1,363,125 + -1.1
1,363,125 + +1.2
1,363,125 + +0.3
1,363,126 - -0.1
1,363,126 - -1.4
1,363,126 - -1.5
1,363,126 - +0.9
1,363,228 + ABZR87_RS06390 0.74 -0.2
1,363,228 + ABZR87_RS06390 0.74 -0.0
1,363,228 + ABZR87_RS06390 0.74 +0.4
1,363,228 + ABZR87_RS06390 0.74 -2.2
1,363,228 + ABZR87_RS06390 0.74 -1.6
1,363,228 + ABZR87_RS06390 0.74 -0.4
1,363,228 + ABZR87_RS06390 0.74 +0.9
1,363,228 + ABZR87_RS06390 0.74 +0.5
1,363,228 + ABZR87_RS06390 0.74 +0.2
1,363,228 + ABZR87_RS06390 0.74 -0.7
1,363,229 - ABZR87_RS06390 0.74 -0.4
1,363,229 - ABZR87_RS06390 0.74 -1.1
1,363,229 - ABZR87_RS06390 0.74 -0.3
1,363,229 - ABZR87_RS06390 0.74 -0.3
1,363,229 - ABZR87_RS06390 0.74 +0.3
1,363,229 - ABZR87_RS06390 0.74 -0.8
1,363,229 - ABZR87_RS06390 0.74 +1.3
1,363,229 - ABZR87_RS06390 0.74 -0.5
1,363,229 - ABZR87_RS06390 0.74 -0.3
1,363,229 - ABZR87_RS06390 0.74 +0.5
1,363,229 - ABZR87_RS06390 0.74 -2.7
1,363,229 - ABZR87_RS06390 0.74 -0.5
1,363,229 - ABZR87_RS06390 0.74 -0.3
1,363,443 + ABZR87_RS06395 0.24 -0.3
1,363,443 + ABZR87_RS06395 0.24 +0.0
1,363,443 + ABZR87_RS06395 0.24 -1.4
1,363,443 + ABZR87_RS06395 0.24 -2.5
1,363,444 - ABZR87_RS06395 0.24 -2.0
1,363,444 - ABZR87_RS06395 0.24 -2.3
1,363,444 - ABZR87_RS06395 0.24 -2.0
1,363,444 - ABZR87_RS06395 0.24 +0.5
1,363,503 + ABZR87_RS06395 0.38 -1.8
1,363,503 + ABZR87_RS06395 0.38 -0.7
1,363,504 - ABZR87_RS06395 0.38 -0.8
1,363,504 - ABZR87_RS06395 0.38 -0.7
1,363,602 + ABZR87_RS06395 0.60 -1.2
1,363,602 + ABZR87_RS06395 0.60 +0.7
1,363,602 + ABZR87_RS06395 0.60 -2.3
1,363,602 + ABZR87_RS06395 0.60 -0.7
1,363,602 + ABZR87_RS06395 0.60 +1.3
1,363,602 + ABZR87_RS06395 0.60 -1.7
1,363,603 - ABZR87_RS06395 0.60 -1.7
1,363,603 - ABZR87_RS06395 0.60 -1.0
1,363,603 - ABZR87_RS06395 0.60 -2.5
1,363,603 - ABZR87_RS06395 0.60 -1.7
1,363,603 - ABZR87_RS06395 0.60 -0.6
1,363,603 - ABZR87_RS06395 0.60 -1.0
1,363,603 - ABZR87_RS06395 0.60 -0.1
1,363,686 + ABZR87_RS06395 0.79 -1.6
1,363,686 + ABZR87_RS06395 0.79 -0.3
1,363,686 + ABZR87_RS06395 0.79 -0.3
1,363,686 + ABZR87_RS06395 0.79 -2.2
1,363,687 - ABZR87_RS06395 0.79 -2.1
1,363,687 - ABZR87_RS06395 0.79 -0.1
1,363,789 - +0.3
1,363,812 - -0.8
1,363,812 - -0.3
1,363,812 - -1.2
1,363,826 + -2.4
1,363,826 + -0.8
1,363,826 + +0.3
1,363,826 + -0.8
1,363,826 + +0.2
1,363,826 + -3.2
1,363,827 - +1.0
1,363,827 - -0.3
1,363,827 - -0.8
1,363,827 - +1.3
1,363,827 - -0.7
1,363,827 - -1.7
1,363,827 - +0.2
1,363,827 - -1.3
1,363,827 - -1.6
1,363,827 - -1.9
1,363,827 - -0.2
1,363,827 - +0.0
1,363,830 + +2.6
1,363,830 + +0.3
1,363,830 + +0.2
1,363,830 + -0.8
1,363,831 - +1.4
1,363,831 - -0.3
1,363,880 + -0.5
1,363,881 - -0.7
1,363,907 + -3.4
1,363,907 + -2.0
1,363,907 + -2.5
1,363,907 + -1.7
1,363,908 - -2.6
1,363,908 - -4.3
1,363,908 - -2.1
1,363,908 - -2.2
1,363,908 - -2.9
1,363,910 + -0.5
1,363,910 + -3.3
1,363,910 + -2.9
1,363,911 - -1.3
1,363,911 - -1.1
1,363,911 - +0.1
1,363,911 - -2.8
1,363,964 + ABZR87_RS06400 0.13 -4.1
1,363,965 - ABZR87_RS06400 0.14 -2.0
1,363,965 - ABZR87_RS06400 0.14 -1.6
1,363,965 - ABZR87_RS06400 0.14 -2.2

Or see this region's nucleotide sequence