Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06095

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06085 and ABZR87_RS06090 are separated by 12 nucleotidesABZR87_RS06090 and ABZR87_RS06095 overlap by 11 nucleotidesABZR87_RS06095 and ABZR87_RS06100 are separated by 4 nucleotidesABZR87_RS06100 and ABZR87_RS06105 are separated by 4 nucleotidesABZR87_RS06105 and ABZR87_RS06110 are separated by 57 nucleotides ABZR87_RS06085: ABZR87_RS06085 - GntR family transcriptional regulator, at 1,300,071 to 1,300,793 _RS06085 ABZR87_RS06090: ABZR87_RS06090 - YoaK family protein, at 1,300,806 to 1,301,513 _RS06090 ABZR87_RS06095: ABZR87_RS06095 - amidohydrolase, at 1,301,503 to 1,303,341 _RS06095 ABZR87_RS06100: ABZR87_RS06100 - DoxX family protein, at 1,303,346 to 1,303,777 _RS06100 ABZR87_RS06105: ABZR87_RS06105 - XapX domain-containing protein, at 1,303,782 to 1,304,102 _RS06105 ABZR87_RS06110: ABZR87_RS06110 - alpha/beta hydrolase, at 1,304,160 to 1,304,981 _RS06110 Position (kb) 1301 1302 1303 1304Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1300.596 kb on + strand, within ABZR87_RS06085at 1300.596 kb on + strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.807 kb on + strandat 1300.970 kb on + strand, within ABZR87_RS06090at 1300.971 kb on - strand, within ABZR87_RS06090at 1300.984 kb on - strand, within ABZR87_RS06090at 1300.984 kb on - strand, within ABZR87_RS06090at 1301.419 kb on + strand, within ABZR87_RS06090at 1301.419 kb on + strand, within ABZR87_RS06090at 1301.420 kb on - strand, within ABZR87_RS06090at 1301.916 kb on - strand, within ABZR87_RS06095at 1301.916 kb on - strand, within ABZR87_RS06095at 1301.916 kb on - strand, within ABZR87_RS06095at 1301.954 kb on + strand, within ABZR87_RS06095at 1301.996 kb on + strand, within ABZR87_RS06095at 1301.996 kb on + strand, within ABZR87_RS06095at 1301.997 kb on - strand, within ABZR87_RS06095at 1302.017 kb on + strand, within ABZR87_RS06095at 1302.017 kb on + strand, within ABZR87_RS06095at 1302.131 kb on + strand, within ABZR87_RS06095at 1302.131 kb on + strand, within ABZR87_RS06095at 1302.131 kb on + strand, within ABZR87_RS06095at 1302.132 kb on - strand, within ABZR87_RS06095at 1302.132 kb on - strand, within ABZR87_RS06095at 1302.311 kb on + strand, within ABZR87_RS06095at 1302.311 kb on + strand, within ABZR87_RS06095at 1302.311 kb on + strand, within ABZR87_RS06095at 1302.495 kb on - strand, within ABZR87_RS06095at 1302.563 kb on + strand, within ABZR87_RS06095at 1302.563 kb on + strand, within ABZR87_RS06095at 1302.563 kb on + strand, within ABZR87_RS06095at 1302.564 kb on - strand, within ABZR87_RS06095at 1302.564 kb on - strand, within ABZR87_RS06095at 1302.564 kb on - strand, within ABZR87_RS06095at 1302.617 kb on + strand, within ABZR87_RS06095at 1302.618 kb on - strand, within ABZR87_RS06095at 1302.629 kb on + strand, within ABZR87_RS06095at 1302.630 kb on - strand, within ABZR87_RS06095at 1302.630 kb on - strand, within ABZR87_RS06095at 1302.758 kb on + strand, within ABZR87_RS06095at 1302.758 kb on + strand, within ABZR87_RS06095at 1302.759 kb on - strand, within ABZR87_RS06095at 1302.861 kb on - strand, within ABZR87_RS06095at 1302.861 kb on - strand, within ABZR87_RS06095at 1303.350 kb on + strandat 1303.629 kb on + strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.051 kb on + strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,300,596 + ABZR87_RS06085 0.73 +0.4
1,300,596 + ABZR87_RS06085 0.73 +0.8
1,300,597 - ABZR87_RS06085 0.73 -1.3
1,300,597 - ABZR87_RS06085 0.73 -0.9
1,300,597 - ABZR87_RS06085 0.73 +0.5
1,300,597 - ABZR87_RS06085 0.73 -0.0
1,300,713 + ABZR87_RS06085 0.89 +1.1
1,300,713 + ABZR87_RS06085 0.89 -0.2
1,300,713 + ABZR87_RS06085 0.89 -0.5
1,300,713 + ABZR87_RS06085 0.89 -0.5
1,300,713 + ABZR87_RS06085 0.89 +0.0
1,300,713 + ABZR87_RS06085 0.89 +1.8
1,300,714 - ABZR87_RS06085 0.89 -0.5
1,300,714 - ABZR87_RS06085 0.89 -0.2
1,300,714 - ABZR87_RS06085 0.89 +0.1
1,300,714 - ABZR87_RS06085 0.89 +1.3
1,300,714 - ABZR87_RS06085 0.89 -0.1
1,300,714 - ABZR87_RS06085 0.89 -0.3
1,300,714 - ABZR87_RS06085 0.89 -0.2
1,300,714 - ABZR87_RS06085 0.89 +0.3
1,300,714 - ABZR87_RS06085 0.89 +2.3
1,300,807 + -0.9
1,300,970 + ABZR87_RS06090 0.23 +0.7
1,300,971 - ABZR87_RS06090 0.23 +1.1
1,300,984 - ABZR87_RS06090 0.25 +1.7
1,300,984 - ABZR87_RS06090 0.25 -1.6
1,301,419 + ABZR87_RS06090 0.87 +0.7
1,301,419 + ABZR87_RS06090 0.87 +0.4
1,301,420 - ABZR87_RS06090 0.87 -0.3
1,301,916 - ABZR87_RS06095 0.22 +0.3
1,301,916 - ABZR87_RS06095 0.22 +0.5
1,301,916 - ABZR87_RS06095 0.22 -1.1
1,301,954 + ABZR87_RS06095 0.25 -1.5
1,301,996 + ABZR87_RS06095 0.27 +0.6
1,301,996 + ABZR87_RS06095 0.27 -0.0
1,301,997 - ABZR87_RS06095 0.27 +0.3
1,302,017 + ABZR87_RS06095 0.28 +0.4
1,302,017 + ABZR87_RS06095 0.28 +0.4
1,302,131 + ABZR87_RS06095 0.34 -0.2
1,302,131 + ABZR87_RS06095 0.34 -0.2
1,302,131 + ABZR87_RS06095 0.34 -0.2
1,302,132 - ABZR87_RS06095 0.34 +0.6
1,302,132 - ABZR87_RS06095 0.34 +0.5
1,302,311 + ABZR87_RS06095 0.44 -0.1
1,302,311 + ABZR87_RS06095 0.44 -0.0
1,302,311 + ABZR87_RS06095 0.44 -0.0
1,302,495 - ABZR87_RS06095 0.54 +0.0
1,302,563 + ABZR87_RS06095 0.58 +0.2
1,302,563 + ABZR87_RS06095 0.58 +1.4
1,302,563 + ABZR87_RS06095 0.58 -0.9
1,302,564 - ABZR87_RS06095 0.58 -0.4
1,302,564 - ABZR87_RS06095 0.58 -0.1
1,302,564 - ABZR87_RS06095 0.58 -1.0
1,302,617 + ABZR87_RS06095 0.61 +0.0
1,302,618 - ABZR87_RS06095 0.61 +0.3
1,302,629 + ABZR87_RS06095 0.61 +0.7
1,302,630 - ABZR87_RS06095 0.61 -0.2
1,302,630 - ABZR87_RS06095 0.61 -0.2
1,302,758 + ABZR87_RS06095 0.68 +0.5
1,302,758 + ABZR87_RS06095 0.68 -0.3
1,302,759 - ABZR87_RS06095 0.68 +3.0
1,302,861 - ABZR87_RS06095 0.74 +0.4
1,302,861 - ABZR87_RS06095 0.74 -0.2
1,303,350 + -0.7
1,303,629 + ABZR87_RS06100 0.66 +1.7
1,303,630 - ABZR87_RS06100 0.66 -1.0
1,303,630 - ABZR87_RS06100 0.66 -0.1
1,303,630 - ABZR87_RS06100 0.66 -0.7
1,303,630 - ABZR87_RS06100 0.66 -2.1
1,304,050 + ABZR87_RS06105 0.83 -0.2
1,304,050 + ABZR87_RS06105 0.83 +1.2
1,304,050 + ABZR87_RS06105 0.83 -2.6
1,304,050 + ABZR87_RS06105 0.83 -0.3
1,304,050 + ABZR87_RS06105 0.83 +0.8
1,304,050 + ABZR87_RS06105 0.83 +0.2
1,304,050 + ABZR87_RS06105 0.83 +1.0
1,304,050 + ABZR87_RS06105 0.83 +0.5
1,304,050 + ABZR87_RS06105 0.83 -0.5
1,304,050 + ABZR87_RS06105 0.83 +0.8
1,304,050 + ABZR87_RS06105 0.83 -1.6
1,304,051 + ABZR87_RS06105 0.84 +0.4
1,304,051 - ABZR87_RS06105 0.84 +0.6
1,304,051 - ABZR87_RS06105 0.84 +1.1
1,304,051 - ABZR87_RS06105 0.84 +0.3
1,304,051 - ABZR87_RS06105 0.84 -1.8
1,304,051 - ABZR87_RS06105 0.84 +0.1
1,304,051 - ABZR87_RS06105 0.84 -1.3
1,304,051 - ABZR87_RS06105 0.84 +0.0
1,304,051 - ABZR87_RS06105 0.84 -0.1
1,304,051 - ABZR87_RS06105 0.84 +0.8
1,304,051 - ABZR87_RS06105 0.84 +1.2
1,304,051 - ABZR87_RS06105 0.84 -0.2
1,304,051 - ABZR87_RS06105 0.84 -0.6
1,304,092 + -0.1
1,304,092 + +0.0
1,304,092 + +0.3
1,304,092 + -0.6
1,304,093 - +0.9

Or see this region's nucleotide sequence