Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03515

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03505 and ABZR87_RS03510 are separated by 9 nucleotidesABZR87_RS03510 and ABZR87_RS03515 are separated by 127 nucleotidesABZR87_RS03515 and ABZR87_RS03520 are separated by 230 nucleotides ABZR87_RS03505: ABZR87_RS03505 - 2-hydroxyacid dehydrogenase, at 735,589 to 736,584 _RS03505 ABZR87_RS03510: ABZR87_RS03510 - HD domain-containing protein, at 736,594 to 737,223 _RS03510 ABZR87_RS03515: ABZR87_RS03515 - Crp/Fnr family transcriptional regulator, at 737,351 to 738,082 _RS03515 ABZR87_RS03520: ABZR87_RS03520 - ferritin-like domain-containing protein, at 738,313 to 739,125 _RS03520 Position (kb) 737 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 736.372 kb on + strand, within ABZR87_RS03505at 736.372 kb on + strand, within ABZR87_RS03505at 736.373 kb on - strand, within ABZR87_RS03505at 736.400 kb on - strand, within ABZR87_RS03505at 736.492 kb on - strandat 736.582 kb on + strandat 736.583 kb on - strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.646 kb on + strandat 736.647 kb on - strandat 736.647 kb on - strandat 736.647 kb on - strandat 736.716 kb on + strand, within ABZR87_RS03510at 736.745 kb on + strand, within ABZR87_RS03510at 736.745 kb on + strand, within ABZR87_RS03510at 736.745 kb on + strand, within ABZR87_RS03510at 736.746 kb on - strand, within ABZR87_RS03510at 736.841 kb on + strand, within ABZR87_RS03510at 736.841 kb on + strand, within ABZR87_RS03510at 736.841 kb on + strand, within ABZR87_RS03510at 736.841 kb on + strand, within ABZR87_RS03510at 736.841 kb on + strand, within ABZR87_RS03510at 736.841 kb on + strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.842 kb on - strand, within ABZR87_RS03510at 736.845 kb on - strand, within ABZR87_RS03510at 736.845 kb on - strand, within ABZR87_RS03510at 736.845 kb on - strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.985 kb on + strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 736.986 kb on - strand, within ABZR87_RS03510at 737.123 kb on + strand, within ABZR87_RS03510at 737.124 kb on - strand, within ABZR87_RS03510at 737.124 kb on - strand, within ABZR87_RS03510at 737.179 kb on - strandat 737.272 kb on - strandat 737.272 kb on - strandat 737.507 kb on + strand, within ABZR87_RS03515at 737.508 kb on - strand, within ABZR87_RS03515at 737.508 kb on - strand, within ABZR87_RS03515at 737.621 kb on + strand, within ABZR87_RS03515at 737.621 kb on + strand, within ABZR87_RS03515at 737.622 kb on - strand, within ABZR87_RS03515at 737.622 kb on - strand, within ABZR87_RS03515at 737.622 kb on - strand, within ABZR87_RS03515at 737.763 kb on - strand, within ABZR87_RS03515at 737.975 kb on + strand, within ABZR87_RS03515at 737.975 kb on + strand, within ABZR87_RS03515at 737.976 kb on - strand, within ABZR87_RS03515at 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.087 kb on - strandat 738.087 kb on - strandat 738.087 kb on - strandat 738.223 kb on + strandat 738.225 kb on - strandat 738.340 kb on + strandat 738.341 kb on - strandat 738.388 kb on + strandat 738.388 kb on + strandat 738.433 kb on + strand, within ABZR87_RS03520at 738.433 kb on + strand, within ABZR87_RS03520at 738.433 kb on + strand, within ABZR87_RS03520at 738.434 kb on - strand, within ABZR87_RS03520at 738.454 kb on + strand, within ABZR87_RS03520at 738.454 kb on + strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.457 kb on + strand, within ABZR87_RS03520at 738.457 kb on + strand, within ABZR87_RS03520at 738.457 kb on + strand, within ABZR87_RS03520at 738.458 kb on - strand, within ABZR87_RS03520at 738.458 kb on - strand, within ABZR87_RS03520at 738.458 kb on - strand, within ABZR87_RS03520at 738.541 kb on + strand, within ABZR87_RS03520at 738.583 kb on + strand, within ABZR87_RS03520at 738.584 kb on - strand, within ABZR87_RS03520at 738.697 kb on + strand, within ABZR87_RS03520at 738.698 kb on - strand, within ABZR87_RS03520at 738.698 kb on - strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 739.006 kb on + strand, within ABZR87_RS03520at 739.006 kb on + strand, within ABZR87_RS03520at 739.007 kb on - strand, within ABZR87_RS03520at 739.007 kb on - strand, within ABZR87_RS03520at 739.007 kb on - strand, within ABZR87_RS03520

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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736,372 + ABZR87_RS03505 0.79 +2.9
736,372 + ABZR87_RS03505 0.79 -0.4
736,373 - ABZR87_RS03505 0.79 -0.8
736,400 - ABZR87_RS03505 0.81 +0.0
736,492 - +1.5
736,582 + +0.7
736,583 - -0.3
736,646 + +1.2
736,646 + -0.6
736,646 + -0.4
736,646 + +0.5
736,646 + -0.2
736,646 + -0.4
736,646 + -0.6
736,646 + +0.6
736,646 + +0.2
736,647 - -0.6
736,647 - -1.1
736,647 - +0.1
736,716 + ABZR87_RS03510 0.19 +0.5
736,745 + ABZR87_RS03510 0.24 +0.2
736,745 + ABZR87_RS03510 0.24 -0.6
736,745 + ABZR87_RS03510 0.24 -0.2
736,746 - ABZR87_RS03510 0.24 +1.2
736,841 + ABZR87_RS03510 0.39 +0.6
736,841 + ABZR87_RS03510 0.39 -0.8
736,841 + ABZR87_RS03510 0.39 -1.6
736,841 + ABZR87_RS03510 0.39 -0.8
736,841 + ABZR87_RS03510 0.39 +1.0
736,841 + ABZR87_RS03510 0.39 +2.4
736,842 - ABZR87_RS03510 0.39 -0.5
736,842 - ABZR87_RS03510 0.39 -0.2
736,842 - ABZR87_RS03510 0.39 -0.4
736,842 - ABZR87_RS03510 0.39 -1.5
736,842 - ABZR87_RS03510 0.39 -0.1
736,842 - ABZR87_RS03510 0.39 +0.6
736,842 - ABZR87_RS03510 0.39 -0.6
736,842 - ABZR87_RS03510 0.39 +0.4
736,842 - ABZR87_RS03510 0.39 +0.5
736,842 - ABZR87_RS03510 0.39 +1.0
736,842 - ABZR87_RS03510 0.39 -1.0
736,842 - ABZR87_RS03510 0.39 +0.4
736,842 - ABZR87_RS03510 0.39 +0.3
736,842 - ABZR87_RS03510 0.39 +0.3
736,845 - ABZR87_RS03510 0.40 -0.2
736,845 - ABZR87_RS03510 0.40 -0.4
736,845 - ABZR87_RS03510 0.40 -1.5
736,985 + ABZR87_RS03510 0.62 -0.4
736,985 + ABZR87_RS03510 0.62 -1.0
736,985 + ABZR87_RS03510 0.62 -0.0
736,985 + ABZR87_RS03510 0.62 -2.3
736,985 + ABZR87_RS03510 0.62 +0.9
736,985 + ABZR87_RS03510 0.62 -0.2
736,985 + ABZR87_RS03510 0.62 -0.2
736,985 + ABZR87_RS03510 0.62 +0.5
736,986 - ABZR87_RS03510 0.62 +0.4
736,986 - ABZR87_RS03510 0.62 -0.0
736,986 - ABZR87_RS03510 0.62 -1.6
736,986 - ABZR87_RS03510 0.62 -1.6
736,986 - ABZR87_RS03510 0.62 +0.9
736,986 - ABZR87_RS03510 0.62 +1.2
736,986 - ABZR87_RS03510 0.62 +0.3
736,986 - ABZR87_RS03510 0.62 -0.0
736,986 - ABZR87_RS03510 0.62 -0.7
736,986 - ABZR87_RS03510 0.62 +4.5
736,986 - ABZR87_RS03510 0.62 +0.0
737,123 + ABZR87_RS03510 0.84 -0.9
737,124 - ABZR87_RS03510 0.84 +0.3
737,124 - ABZR87_RS03510 0.84 +0.4
737,179 - +0.2
737,272 - +0.6
737,272 - -0.5
737,507 + ABZR87_RS03515 0.21 -1.4
737,508 - ABZR87_RS03515 0.21 +0.5
737,508 - ABZR87_RS03515 0.21 +1.3
737,621 + ABZR87_RS03515 0.37 -0.9
737,621 + ABZR87_RS03515 0.37 -0.6
737,622 - ABZR87_RS03515 0.37 +0.4
737,622 - ABZR87_RS03515 0.37 +0.1
737,622 - ABZR87_RS03515 0.37 -0.1
737,763 - ABZR87_RS03515 0.56 -0.6
737,975 + ABZR87_RS03515 0.85 +0.2
737,975 + ABZR87_RS03515 0.85 +4.8
737,976 - ABZR87_RS03515 0.85 +0.2
738,086 + +0.1
738,086 + +0.4
738,086 + -1.7
738,086 + +0.5
738,086 + +0.6
738,086 + +0.1
738,086 + -1.3
738,086 + +1.0
738,086 + -1.0
738,087 - -0.4
738,087 - -0.4
738,087 - -0.9
738,223 + -1.4
738,225 - -0.2
738,340 + +2.5
738,341 - -0.3
738,388 + +0.3
738,388 + +0.8
738,433 + ABZR87_RS03520 0.15 -1.2
738,433 + ABZR87_RS03520 0.15 +0.4
738,433 + ABZR87_RS03520 0.15 +1.6
738,434 - ABZR87_RS03520 0.15 +0.7
738,454 + ABZR87_RS03520 0.17 -0.6
738,454 + ABZR87_RS03520 0.17 +0.4
738,455 - ABZR87_RS03520 0.17 -0.4
738,455 - ABZR87_RS03520 0.17 +0.8
738,455 - ABZR87_RS03520 0.17 +1.3
738,455 - ABZR87_RS03520 0.17 -0.3
738,455 - ABZR87_RS03520 0.17 -0.3
738,457 + ABZR87_RS03520 0.18 +0.0
738,457 + ABZR87_RS03520 0.18 -0.3
738,457 + ABZR87_RS03520 0.18 +0.6
738,458 - ABZR87_RS03520 0.18 +0.9
738,458 - ABZR87_RS03520 0.18 +0.0
738,458 - ABZR87_RS03520 0.18 +0.4
738,541 + ABZR87_RS03520 0.28 -0.6
738,583 + ABZR87_RS03520 0.33 +1.9
738,584 - ABZR87_RS03520 0.33 -0.0
738,697 + ABZR87_RS03520 0.47 -1.5
738,698 - ABZR87_RS03520 0.47 +0.5
738,698 - ABZR87_RS03520 0.47 +0.9
738,787 + ABZR87_RS03520 0.58 -0.9
738,787 + ABZR87_RS03520 0.58 +0.7
738,787 + ABZR87_RS03520 0.58 +0.8
738,787 + ABZR87_RS03520 0.58 -0.0
738,787 + ABZR87_RS03520 0.58 +0.0
738,787 + ABZR87_RS03520 0.58 -0.5
738,787 + ABZR87_RS03520 0.58 +0.3
738,787 + ABZR87_RS03520 0.58 +0.4
738,787 + ABZR87_RS03520 0.58 +0.0
738,788 - ABZR87_RS03520 0.58 +0.2
738,788 - ABZR87_RS03520 0.58 +0.6
738,788 - ABZR87_RS03520 0.58 +0.5
738,788 - ABZR87_RS03520 0.58 -1.9
738,788 - ABZR87_RS03520 0.58 -0.5
739,006 + ABZR87_RS03520 0.85 +0.1
739,006 + ABZR87_RS03520 0.85 -1.2
739,007 - ABZR87_RS03520 0.85 -3.4
739,007 - ABZR87_RS03520 0.85 -0.0
739,007 - ABZR87_RS03520 0.85 +0.5

Or see this region's nucleotide sequence