Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03165

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03160 and ABZR87_RS03165 are separated by 119 nucleotidesABZR87_RS03165 and ABZR87_RS03170 are separated by 41 nucleotidesABZR87_RS03170 and ABZR87_RS03175 are separated by 41 nucleotides ABZR87_RS03160: ABZR87_RS03160 - MFS transporter, at 665,275 to 666,528 _RS03160 ABZR87_RS03165: ABZR87_RS03165 - glutathione S-transferase, at 666,648 to 667,364 _RS03165 ABZR87_RS03170: ABZR87_RS03170 - hypothetical protein, at 667,406 to 667,795 _RS03170 ABZR87_RS03175: ABZR87_RS03175 - hypothetical protein, at 667,837 to 668,259 _RS03175 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.738 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 666.056 kb on + strand, within ABZR87_RS03160at 666.056 kb on + strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.107 kb on + strand, within ABZR87_RS03160at 666.107 kb on + strand, within ABZR87_RS03160at 666.108 kb on - strand, within ABZR87_RS03160at 666.108 kb on - strand, within ABZR87_RS03160at 666.313 kb on + strand, within ABZR87_RS03160at 666.392 kb on + strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.449 kb on + strandat 666.564 kb on + strandat 666.564 kb on + strandat 666.564 kb on + strandat 666.565 kb on - strandat 666.565 kb on - strandat 666.567 kb on + strandat 666.567 kb on + strandat 666.567 kb on + strandat 666.568 kb on - strandat 666.663 kb on + strandat 666.663 kb on + strandat 666.663 kb on + strandat 666.663 kb on + strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.732 kb on + strand, within ABZR87_RS03165at 666.732 kb on + strand, within ABZR87_RS03165at 666.733 kb on - strand, within ABZR87_RS03165at 666.733 kb on - strand, within ABZR87_RS03165at 666.733 kb on - strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.735 kb on - strand, within ABZR87_RS03165at 666.735 kb on - strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 667.003 kb on - strand, within ABZR87_RS03165at 667.003 kb on - strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.215 kb on + strand, within ABZR87_RS03165at 667.284 kb on + strand, within ABZR87_RS03165at 667.424 kb on - strandat 667.451 kb on + strand, within ABZR87_RS03170at 667.451 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.810 kb on + strandat 667.810 kb on + strandat 667.845 kb on + strandat 667.846 kb on - strandat 668.033 kb on + strand, within ABZR87_RS03175at 668.033 kb on + strand, within ABZR87_RS03175at 668.033 kb on + strand, within ABZR87_RS03175at 668.034 kb on - strand, within ABZR87_RS03175at 668.034 kb on - strand, within ABZR87_RS03175at 668.066 kb on + strand, within ABZR87_RS03175at 668.066 kb on + strand, within ABZR87_RS03175at 668.066 kb on + strand, within ABZR87_RS03175at 668.067 kb on - strand, within ABZR87_RS03175at 668.067 kb on - strand, within ABZR87_RS03175at 668.067 kb on - strand, within ABZR87_RS03175at 668.099 kb on + strand, within ABZR87_RS03175at 668.100 kb on - strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.157 kb on - strand, within ABZR87_RS03175at 668.225 kb on + strandat 668.226 kb on - strandat 668.226 kb on - strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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665,696 + ABZR87_RS03160 0.34 +3.7
665,696 + ABZR87_RS03160 0.34 -0.0
665,696 + ABZR87_RS03160 0.34 -1.4
665,696 + ABZR87_RS03160 0.34 -0.9
665,696 + ABZR87_RS03160 0.34 -0.2
665,696 + ABZR87_RS03160 0.34 -0.3
665,697 - ABZR87_RS03160 0.34 -0.5
665,697 - ABZR87_RS03160 0.34 +0.6
665,697 - ABZR87_RS03160 0.34 -0.1
665,697 - ABZR87_RS03160 0.34 +0.0
665,697 - ABZR87_RS03160 0.34 -1.5
665,697 - ABZR87_RS03160 0.34 -1.0
665,697 - ABZR87_RS03160 0.34 -0.2
665,697 - ABZR87_RS03160 0.34 -0.3
665,738 + ABZR87_RS03160 0.37 +0.1
665,768 + ABZR87_RS03160 0.39 -0.7
665,768 + ABZR87_RS03160 0.39 +0.1
665,768 + ABZR87_RS03160 0.39 +0.4
665,768 + ABZR87_RS03160 0.39 -0.4
665,768 + ABZR87_RS03160 0.39 -0.9
665,768 + ABZR87_RS03160 0.39 -1.1
665,768 + ABZR87_RS03160 0.39 -0.9
665,774 + ABZR87_RS03160 0.40 +0.6
665,774 + ABZR87_RS03160 0.40 +0.4
665,774 + ABZR87_RS03160 0.40 -1.0
665,774 + ABZR87_RS03160 0.40 -0.8
665,775 - ABZR87_RS03160 0.40 +0.2
665,775 - ABZR87_RS03160 0.40 +0.3
665,775 - ABZR87_RS03160 0.40 -0.4
665,775 - ABZR87_RS03160 0.40 +0.2
665,775 - ABZR87_RS03160 0.40 +0.6
666,056 + ABZR87_RS03160 0.62 +0.3
666,056 + ABZR87_RS03160 0.62 -0.4
666,057 - ABZR87_RS03160 0.62 +1.3
666,057 - ABZR87_RS03160 0.62 +0.3
666,057 - ABZR87_RS03160 0.62 +1.4
666,107 + ABZR87_RS03160 0.66 -0.0
666,107 + ABZR87_RS03160 0.66 +0.1
666,108 - ABZR87_RS03160 0.66 -0.0
666,108 - ABZR87_RS03160 0.66 +0.5
666,313 + ABZR87_RS03160 0.83 -1.5
666,392 + ABZR87_RS03160 0.89 -0.6
666,393 - ABZR87_RS03160 0.89 +0.2
666,393 - ABZR87_RS03160 0.89 +3.7
666,393 - ABZR87_RS03160 0.89 +0.2
666,393 - ABZR87_RS03160 0.89 -0.1
666,393 - ABZR87_RS03160 0.89 +6.3
666,449 + -0.3
666,564 + +0.7
666,564 + -0.0
666,564 + +0.3
666,565 - +0.7
666,565 - +3.0
666,567 + +0.9
666,567 + -0.1
666,567 + +0.5
666,568 - +0.2
666,663 + -0.4
666,663 + +2.1
666,663 + +0.3
666,663 + -0.9
666,664 - +0.8
666,664 - -1.0
666,664 - +0.5
666,664 - -0.5
666,664 - -1.3
666,664 - +0.3
666,666 + +0.6
666,666 + -1.0
666,666 + +0.1
666,666 + +0.7
666,666 + +0.5
666,732 + ABZR87_RS03165 0.12 -0.2
666,732 + ABZR87_RS03165 0.12 -0.0
666,733 - ABZR87_RS03165 0.12 +1.7
666,733 - ABZR87_RS03165 0.12 +1.2
666,733 - ABZR87_RS03165 0.12 +0.4
666,734 + ABZR87_RS03165 0.12 -1.0
666,734 + ABZR87_RS03165 0.12 +0.1
666,734 + ABZR87_RS03165 0.12 -0.1
666,734 + ABZR87_RS03165 0.12 +1.5
666,735 - ABZR87_RS03165 0.12 -0.3
666,735 - ABZR87_RS03165 0.12 +0.3
666,870 + ABZR87_RS03165 0.31 +0.9
666,870 + ABZR87_RS03165 0.31 +1.8
666,870 + ABZR87_RS03165 0.31 -1.1
666,871 - ABZR87_RS03165 0.31 -0.4
666,871 - ABZR87_RS03165 0.31 -0.3
666,871 - ABZR87_RS03165 0.31 -1.8
666,871 - ABZR87_RS03165 0.31 -0.3
666,871 - ABZR87_RS03165 0.31 -2.6
667,003 - ABZR87_RS03165 0.50 -0.2
667,003 - ABZR87_RS03165 0.50 -0.0
667,005 + ABZR87_RS03165 0.50 -0.9
667,005 + ABZR87_RS03165 0.50 +0.2
667,005 + ABZR87_RS03165 0.50 -0.1
667,005 + ABZR87_RS03165 0.50 -0.7
667,006 - ABZR87_RS03165 0.50 +0.2
667,006 - ABZR87_RS03165 0.50 +1.9
667,006 - ABZR87_RS03165 0.50 -1.2
667,006 - ABZR87_RS03165 0.50 -1.1
667,080 + ABZR87_RS03165 0.60 +1.3
667,080 + ABZR87_RS03165 0.60 +0.8
667,080 + ABZR87_RS03165 0.60 -0.4
667,080 + ABZR87_RS03165 0.60 -0.8
667,080 + ABZR87_RS03165 0.60 +0.5
667,081 - ABZR87_RS03165 0.60 -0.4
667,081 - ABZR87_RS03165 0.60 -0.9
667,081 - ABZR87_RS03165 0.60 +2.9
667,081 - ABZR87_RS03165 0.60 -0.1
667,146 + ABZR87_RS03165 0.69 -0.6
667,146 + ABZR87_RS03165 0.69 +0.3
667,146 + ABZR87_RS03165 0.69 -0.1
667,146 + ABZR87_RS03165 0.69 -1.1
667,146 + ABZR87_RS03165 0.69 +0.3
667,146 + ABZR87_RS03165 0.69 -0.2
667,146 + ABZR87_RS03165 0.69 -0.4
667,146 + ABZR87_RS03165 0.69 -0.3
667,146 + ABZR87_RS03165 0.69 -2.3
667,146 + ABZR87_RS03165 0.69 +0.3
667,146 + ABZR87_RS03165 0.69 +0.6
667,146 + ABZR87_RS03165 0.69 +0.5
667,147 - ABZR87_RS03165 0.70 +0.6
667,147 - ABZR87_RS03165 0.70 +0.7
667,147 - ABZR87_RS03165 0.70 -1.2
667,147 - ABZR87_RS03165 0.70 +0.5
667,147 - ABZR87_RS03165 0.70 -0.1
667,147 - ABZR87_RS03165 0.70 -0.5
667,147 - ABZR87_RS03165 0.70 -0.8
667,147 - ABZR87_RS03165 0.70 +0.6
667,147 - ABZR87_RS03165 0.70 -0.5
667,215 + ABZR87_RS03165 0.79 +0.8
667,284 + ABZR87_RS03165 0.89 -0.1
667,424 - -0.8
667,451 + ABZR87_RS03170 0.12 -0.5
667,451 + ABZR87_RS03170 0.12 +0.4
667,629 + ABZR87_RS03170 0.57 -0.4
667,629 + ABZR87_RS03170 0.57 +0.3
667,629 + ABZR87_RS03170 0.57 +0.2
667,629 + ABZR87_RS03170 0.57 -1.1
667,629 + ABZR87_RS03170 0.57 -0.4
667,629 + ABZR87_RS03170 0.57 +0.6
667,629 + ABZR87_RS03170 0.57 -0.5
667,630 - ABZR87_RS03170 0.57 -1.2
667,630 - ABZR87_RS03170 0.57 +3.9
667,630 - ABZR87_RS03170 0.57 +0.6
667,630 - ABZR87_RS03170 0.57 +0.5
667,630 - ABZR87_RS03170 0.57 -0.2
667,630 - ABZR87_RS03170 0.57 +0.7
667,630 - ABZR87_RS03170 0.57 +0.3
667,810 + +0.7
667,810 + -1.5
667,845 + -0.5
667,846 - +1.3
668,033 + ABZR87_RS03175 0.46 -1.0
668,033 + ABZR87_RS03175 0.46 -0.7
668,033 + ABZR87_RS03175 0.46 +1.9
668,034 - ABZR87_RS03175 0.47 -1.7
668,034 - ABZR87_RS03175 0.47 +0.8
668,066 + ABZR87_RS03175 0.54 -0.4
668,066 + ABZR87_RS03175 0.54 +0.4
668,066 + ABZR87_RS03175 0.54 +0.4
668,067 - ABZR87_RS03175 0.54 -0.5
668,067 - ABZR87_RS03175 0.54 +0.7
668,067 - ABZR87_RS03175 0.54 -1.0
668,099 + ABZR87_RS03175 0.62 +1.3
668,100 - ABZR87_RS03175 0.62 -1.3
668,156 + ABZR87_RS03175 0.75 +1.1
668,156 + ABZR87_RS03175 0.75 -0.2
668,156 + ABZR87_RS03175 0.75 -1.8
668,156 + ABZR87_RS03175 0.75 +0.3
668,157 - ABZR87_RS03175 0.76 -0.3
668,225 + -0.9
668,226 - -0.7
668,226 - +0.4
668,246 + -0.1
668,246 + +0.3
668,246 + +0.7
668,246 + -0.6
668,246 + -0.5
668,246 + -1.5
668,246 + -0.6
668,247 - -0.6
668,247 - +0.9
668,247 - +0.8
668,247 - +0.0
668,247 - +0.1
668,247 - -0.7
668,364 + -0.2
668,364 + -0.6
668,364 + -2.4
668,364 + +0.7
668,364 + +1.3

Or see this region's nucleotide sequence