Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02405

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02400 and ABZR87_RS02405 are separated by 420 nucleotidesABZR87_RS02405 and ABZR87_RS02410 are separated by 332 nucleotides ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650 _RS02400 ABZR87_RS02405: ABZR87_RS02405 - porin, at 513,071 to 514,177 _RS02405 ABZR87_RS02410: ABZR87_RS02410 - extracellular solute-binding protein, at 514,510 to 515,652 _RS02410 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.282 kb on - strand, within ABZR87_RS02400at 512.480 kb on - strand, within ABZR87_RS02400at 512.490 kb on + strand, within ABZR87_RS02400at 512.491 kb on - strand, within ABZR87_RS02400at 512.599 kb on + strandat 512.648 kb on + strandat 512.648 kb on + strandat 512.649 kb on - strandat 512.649 kb on - strandat 512.649 kb on - strandat 512.667 kb on + strandat 512.701 kb on + strandat 512.792 kb on + strandat 512.793 kb on - strandat 512.807 kb on + strandat 512.807 kb on + strandat 512.808 kb on - strandat 512.808 kb on - strandat 512.808 kb on - strandat 512.811 kb on + strandat 512.811 kb on + strandat 512.811 kb on + strandat 512.811 kb on + strandat 512.812 kb on - strandat 512.812 kb on - strandat 512.812 kb on - strandat 512.821 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.870 kb on - strandat 512.870 kb on - strandat 512.905 kb on + strandat 512.905 kb on + strandat 512.905 kb on + strandat 512.906 kb on - strandat 514.481 kb on + strandat 514.481 kb on + strandat 514.481 kb on + strandat 514.580 kb on - strandat 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.777 kb on - strand, within ABZR87_RS02410at 514.805 kb on + strand, within ABZR87_RS02410at 514.806 kb on - strand, within ABZR87_RS02410at 514.806 kb on - strand, within ABZR87_RS02410at 514.821 kb on - strand, within ABZR87_RS02410at 514.850 kb on + strand, within ABZR87_RS02410at 514.862 kb on + strand, within ABZR87_RS02410at 514.862 kb on + strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.880 kb on + strand, within ABZR87_RS02410at 514.880 kb on + strand, within ABZR87_RS02410at 514.881 kb on - strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.153 kb on + strand, within ABZR87_RS02410at 515.154 kb on - strand, within ABZR87_RS02410at 515.154 kb on - strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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512,204 + ABZR87_RS02400 0.63 +3.4
512,204 + ABZR87_RS02400 0.63 +0.9
512,204 + ABZR87_RS02400 0.63 +0.2
512,204 + ABZR87_RS02400 0.63 +2.0
512,204 + ABZR87_RS02400 0.63 +0.3
512,281 + ABZR87_RS02400 0.70 +0.9
512,281 + ABZR87_RS02400 0.70 +1.6
512,281 + ABZR87_RS02400 0.70 -0.4
512,281 + ABZR87_RS02400 0.70 +2.1
512,281 + ABZR87_RS02400 0.70 +1.9
512,282 - ABZR87_RS02400 0.70 -0.1
512,480 - ABZR87_RS02400 0.86 +1.4
512,490 + ABZR87_RS02400 0.87 -1.9
512,491 - ABZR87_RS02400 0.87 +0.1
512,599 + -1.7
512,648 + -1.1
512,648 + -0.7
512,649 - +0.0
512,649 - -0.5
512,649 - -1.4
512,667 + -1.3
512,701 + +0.5
512,792 + -0.0
512,793 - -0.4
512,807 + -2.4
512,807 + -0.5
512,808 - -1.4
512,808 - +0.8
512,808 - +2.2
512,811 + +0.4
512,811 + +0.1
512,811 + +0.1
512,811 + -1.1
512,812 - -1.7
512,812 - +0.4
512,812 - +0.6
512,821 + +0.6
512,858 + -0.6
512,858 + +1.0
512,858 + +0.2
512,858 + -1.2
512,859 - -0.5
512,859 - -0.8
512,859 - -0.3
512,859 - +0.0
512,859 - -0.0
512,859 - -1.1
512,859 - +2.4
512,870 - +0.0
512,870 - -2.5
512,905 + +0.6
512,905 + -0.4
512,905 + -0.4
512,906 - -0.7
514,481 + -1.3
514,481 + +1.4
514,481 + -0.1
514,580 - +0.8
514,776 + ABZR87_RS02410 0.23 -1.0
514,776 + ABZR87_RS02410 0.23 +0.5
514,776 + ABZR87_RS02410 0.23 -1.1
514,776 + ABZR87_RS02410 0.23 -0.2
514,776 + ABZR87_RS02410 0.23 +0.9
514,776 + ABZR87_RS02410 0.23 +0.2
514,777 - ABZR87_RS02410 0.23 -0.4
514,805 + ABZR87_RS02410 0.26 +0.1
514,806 - ABZR87_RS02410 0.26 -0.4
514,806 - ABZR87_RS02410 0.26 +0.2
514,821 - ABZR87_RS02410 0.27 +0.5
514,850 + ABZR87_RS02410 0.30 +0.0
514,862 + ABZR87_RS02410 0.31 -0.8
514,862 + ABZR87_RS02410 0.31 -1.5
514,863 - ABZR87_RS02410 0.31 +0.4
514,863 - ABZR87_RS02410 0.31 +0.7
514,863 - ABZR87_RS02410 0.31 +0.1
514,863 - ABZR87_RS02410 0.31 -0.3
514,880 + ABZR87_RS02410 0.32 -0.8
514,880 + ABZR87_RS02410 0.32 +0.4
514,881 - ABZR87_RS02410 0.32 +0.1
514,937 + ABZR87_RS02410 0.37 -0.2
514,937 + ABZR87_RS02410 0.37 -0.0
514,937 + ABZR87_RS02410 0.37 +0.7
514,937 + ABZR87_RS02410 0.37 -0.4
514,937 + ABZR87_RS02410 0.37 +1.0
514,937 + ABZR87_RS02410 0.37 +1.3
514,937 + ABZR87_RS02410 0.37 +0.4
514,937 + ABZR87_RS02410 0.37 +0.3
514,937 + ABZR87_RS02410 0.37 -0.1
514,938 - ABZR87_RS02410 0.37 +0.5
514,938 - ABZR87_RS02410 0.37 +0.7
514,938 - ABZR87_RS02410 0.37 -0.3
514,938 - ABZR87_RS02410 0.37 +0.6
514,938 - ABZR87_RS02410 0.37 +3.0
514,938 - ABZR87_RS02410 0.37 +0.2
514,938 - ABZR87_RS02410 0.37 +0.1
515,048 + ABZR87_RS02410 0.47 -0.9
515,048 + ABZR87_RS02410 0.47 -0.8
515,048 + ABZR87_RS02410 0.47 +0.8
515,048 + ABZR87_RS02410 0.47 -1.3
515,049 - ABZR87_RS02410 0.47 +1.1
515,049 - ABZR87_RS02410 0.47 -0.2
515,049 - ABZR87_RS02410 0.47 -2.0
515,049 - ABZR87_RS02410 0.47 -0.2
515,049 - ABZR87_RS02410 0.47 -1.3
515,153 + ABZR87_RS02410 0.56 +0.7
515,154 - ABZR87_RS02410 0.56 +1.6
515,154 - ABZR87_RS02410 0.56 -1.2
515,174 + ABZR87_RS02410 0.58 +2.5
515,174 + ABZR87_RS02410 0.58 +1.9
515,174 + ABZR87_RS02410 0.58 +2.9
515,174 + ABZR87_RS02410 0.58 -0.4
515,174 + ABZR87_RS02410 0.58 +0.1
515,174 + ABZR87_RS02410 0.58 -1.4
515,175 - ABZR87_RS02410 0.58 +0.4
515,175 - ABZR87_RS02410 0.58 -0.2
515,175 - ABZR87_RS02410 0.58 -0.9
515,175 - ABZR87_RS02410 0.58 -0.5

Or see this region's nucleotide sequence