Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02310 and ABZR87_RS02315 are separated by 124 nucleotides ABZR87_RS02315 and ABZR87_RS02320 are separated by 51 nucleotides ABZR87_RS02320 and ABZR87_RS02325 are separated by 0 nucleotides
ABZR87_RS02310: ABZR87_RS02310 - energy-dependent translational throttle protein EttA, at 493,817 to 495,484
_RS02310
ABZR87_RS02315: ABZR87_RS02315 - winged helix DNA-binding domain-containing protein, at 495,609 to 496,739
_RS02315
ABZR87_RS02320: ABZR87_RS02320 - cytochrome o ubiquinol oxidase subunit IV, at 496,791 to 497,159
_RS02320
ABZR87_RS02325: ABZR87_RS02325 - cytochrome o ubiquinol oxidase subunit III, at 497,160 to 497,801
_RS02325
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.754 kb on + strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.755 kb on - strand, within ABZR87_RS02310 at 494.826 kb on + strand, within ABZR87_RS02310 at 494.826 kb on + strand, within ABZR87_RS02310 at 494.827 kb on - strand, within ABZR87_RS02310 at 495.153 kb on + strand, within ABZR87_RS02310 at 495.154 kb on - strand, within ABZR87_RS02310 at 495.162 kb on + strand, within ABZR87_RS02310 at 495.162 kb on + strand, within ABZR87_RS02310 at 495.162 kb on + strand, within ABZR87_RS02310 at 495.163 kb on - strand, within ABZR87_RS02310 at 495.268 kb on - strand, within ABZR87_RS02310 at 495.268 kb on - strand, within ABZR87_RS02310 at 495.474 kb on + strand at 495.474 kb on + strand at 495.489 kb on + strand at 495.489 kb on + strand at 495.489 kb on + strand at 495.490 kb on - strand at 495.490 kb on - strand at 495.532 kb on + strand at 495.532 kb on + strand at 495.532 kb on + strand at 495.532 kb on + strand at 495.532 kb on + strand at 495.533 kb on - strand at 495.617 kb on + strand at 495.618 kb on - strand at 495.682 kb on + strand at 495.783 kb on + strand, within ABZR87_RS02315 at 495.784 kb on - strand, within ABZR87_RS02315 at 496.054 kb on + strand, within ABZR87_RS02315 at 496.054 kb on + strand, within ABZR87_RS02315 at 496.055 kb on - strand, within ABZR87_RS02315 at 496.254 kb on + strand, within ABZR87_RS02315 at 496.255 kb on - strand, within ABZR87_RS02315 at 496.290 kb on - strand, within ABZR87_RS02315 at 496.339 kb on + strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.340 kb on - strand, within ABZR87_RS02315 at 496.521 kb on + strand, within ABZR87_RS02315 at 496.521 kb on + strand, within ABZR87_RS02315 at 496.522 kb on - strand, within ABZR87_RS02315 at 496.522 kb on - strand, within ABZR87_RS02315 at 496.522 kb on - strand, within ABZR87_RS02315 at 496.792 kb on + strand at 496.792 kb on + strand at 496.792 kb on + strand at 496.793 kb on - strand at 496.793 kb on - strand at 496.793 kb on - strand at 496.793 kb on - strand at 496.820 kb on + strand at 496.821 kb on - strand at 496.821 kb on - strand at 496.930 kb on + strand, within ABZR87_RS02320 at 496.930 kb on + strand, within ABZR87_RS02320 at 496.930 kb on + strand, within ABZR87_RS02320 at 496.931 kb on - strand, within ABZR87_RS02320 at 496.931 kb on - strand, within ABZR87_RS02320 at 497.161 kb on + strand at 497.162 kb on - strand at 497.179 kb on + strand at 497.179 kb on + strand at 497.179 kb on + strand at 497.180 kb on - strand at 497.180 kb on - strand at 497.180 kb on - strand at 497.367 kb on + strand, within ABZR87_RS02325 at 497.527 kb on + strand, within ABZR87_RS02325 at 497.527 kb on + strand, within ABZR87_RS02325 at 497.528 kb on - strand, within ABZR87_RS02325 at 497.528 kb on - strand, within ABZR87_RS02325 at 497.572 kb on + strand, within ABZR87_RS02325 at 497.572 kb on + strand, within ABZR87_RS02325 at 497.573 kb on - strand, within ABZR87_RS02325 at 497.660 kb on + strand, within ABZR87_RS02325 at 497.661 kb on - strand, within ABZR87_RS02325 at 497.680 kb on + strand, within ABZR87_RS02325 at 497.681 kb on - strand, within ABZR87_RS02325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 494,754 + ABZR87_RS02310 0.56 -0.2 494,754 + ABZR87_RS02310 0.56 -1.0 494,754 + ABZR87_RS02310 0.56 -0.3 494,754 + ABZR87_RS02310 0.56 -0.1 494,754 + ABZR87_RS02310 0.56 +0.7 494,754 + ABZR87_RS02310 0.56 +0.1 494,754 + ABZR87_RS02310 0.56 -0.8 494,755 - ABZR87_RS02310 0.56 -0.1 494,755 - ABZR87_RS02310 0.56 -0.7 494,755 - ABZR87_RS02310 0.56 -0.3 494,755 - ABZR87_RS02310 0.56 -2.2 494,755 - ABZR87_RS02310 0.56 +2.1 494,755 - ABZR87_RS02310 0.56 +4.4 494,755 - ABZR87_RS02310 0.56 -0.7 494,755 - ABZR87_RS02310 0.56 +1.7 494,826 + ABZR87_RS02310 0.60 +0.6 494,826 + ABZR87_RS02310 0.60 +1.6 494,827 - ABZR87_RS02310 0.61 -0.2 495,153 + ABZR87_RS02310 0.80 +0.4 495,154 - ABZR87_RS02310 0.80 +0.2 495,162 + ABZR87_RS02310 0.81 -0.6 495,162 + ABZR87_RS02310 0.81 -0.6 495,162 + ABZR87_RS02310 0.81 +2.2 495,163 - ABZR87_RS02310 0.81 +0.8 495,268 - ABZR87_RS02310 0.87 +0.1 495,268 - ABZR87_RS02310 0.87 +0.6 495,474 + +0.2 495,474 + -0.6 495,489 + -0.9 495,489 + +0.2 495,489 + -0.4 495,490 - +0.7 495,490 - +1.0 495,532 + +0.9 495,532 + +0.5 495,532 + +0.2 495,532 + -0.7 495,532 + -0.3 495,533 - +0.5 495,617 + +2.7 495,618 - +0.6 495,682 + -0.5 495,783 + ABZR87_RS02315 0.15 -0.1 495,784 - ABZR87_RS02315 0.15 -0.2 496,054 + ABZR87_RS02315 0.39 -0.2 496,054 + ABZR87_RS02315 0.39 -0.4 496,055 - ABZR87_RS02315 0.39 -1.1 496,254 + ABZR87_RS02315 0.57 +0.2 496,255 - ABZR87_RS02315 0.57 +0.5 496,290 - ABZR87_RS02315 0.60 +1.0 496,339 + ABZR87_RS02315 0.65 +1.2 496,340 - ABZR87_RS02315 0.65 -0.9 496,340 - ABZR87_RS02315 0.65 +2.0 496,340 - ABZR87_RS02315 0.65 +0.2 496,340 - ABZR87_RS02315 0.65 +1.0 496,340 - ABZR87_RS02315 0.65 -1.2 496,521 + ABZR87_RS02315 0.81 +0.1 496,521 + ABZR87_RS02315 0.81 -1.5 496,522 - ABZR87_RS02315 0.81 +1.0 496,522 - ABZR87_RS02315 0.81 -0.3 496,522 - ABZR87_RS02315 0.81 -0.8 496,792 + -1.5 496,792 + +0.6 496,792 + +0.5 496,793 - +2.4 496,793 - +1.0 496,793 - +0.7 496,793 - +0.3 496,820 + -1.6 496,821 - -0.6 496,821 - +1.2 496,930 + ABZR87_RS02320 0.38 -2.2 496,930 + ABZR87_RS02320 0.38 -0.2 496,930 + ABZR87_RS02320 0.38 -0.7 496,931 - ABZR87_RS02320 0.38 -0.5 496,931 - ABZR87_RS02320 0.38 -0.9 497,161 + -1.5 497,162 - +0.0 497,179 + +1.4 497,179 + -0.5 497,179 + -0.9 497,180 - -1.0 497,180 - -0.8 497,180 - +0.1 497,367 + ABZR87_RS02325 0.32 -1.4 497,527 + ABZR87_RS02325 0.57 -1.0 497,527 + ABZR87_RS02325 0.57 -0.4 497,528 - ABZR87_RS02325 0.57 -0.2 497,528 - ABZR87_RS02325 0.57 -0.6 497,572 + ABZR87_RS02325 0.64 -0.7 497,572 + ABZR87_RS02325 0.64 -1.3 497,573 - ABZR87_RS02325 0.64 -0.0 497,660 + ABZR87_RS02325 0.78 -1.7 497,661 - ABZR87_RS02325 0.78 -0.4 497,680 + ABZR87_RS02325 0.81 -1.4 497,681 - ABZR87_RS02325 0.81 +0.6
Or see this region's nucleotide sequence