Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02000

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01995 and ABZR87_RS02000 are separated by 121 nucleotidesABZR87_RS02000 and ABZR87_RS02005 are separated by 87 nucleotides ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337 _RS01995 ABZR87_RS02000: ABZR87_RS02000 - tripartite tricarboxylate transporter substrate binding protein, at 426,459 to 427,484 _RS02000 ABZR87_RS02005: ABZR87_RS02005 - MFS transporter, at 427,572 to 428,888 _RS02005 Position (kb) 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 425.537 kb on + strand, within ABZR87_RS01995at 425.537 kb on + strand, within ABZR87_RS01995at 425.537 kb on + strand, within ABZR87_RS01995at 425.537 kb on + strand, within ABZR87_RS01995at 425.537 kb on + strand, within ABZR87_RS01995at 425.538 kb on - strand, within ABZR87_RS01995at 425.538 kb on - strand, within ABZR87_RS01995at 425.538 kb on - strand, within ABZR87_RS01995at 425.538 kb on - strand, within ABZR87_RS01995at 425.538 kb on - strand, within ABZR87_RS01995at 425.538 kb on - strand, within ABZR87_RS01995at 425.582 kb on + strand, within ABZR87_RS01995at 425.594 kb on + strand, within ABZR87_RS01995at 425.594 kb on + strand, within ABZR87_RS01995at 425.595 kb on - strand, within ABZR87_RS01995at 425.595 kb on - strand, within ABZR87_RS01995at 425.595 kb on - strand, within ABZR87_RS01995at 425.595 kb on - strand, within ABZR87_RS01995at 425.651 kb on + strand, within ABZR87_RS01995at 425.651 kb on + strand, within ABZR87_RS01995at 425.651 kb on + strand, within ABZR87_RS01995at 425.651 kb on + strand, within ABZR87_RS01995at 425.651 kb on + strand, within ABZR87_RS01995at 425.652 kb on - strand, within ABZR87_RS01995at 425.652 kb on - strand, within ABZR87_RS01995at 425.753 kb on + strand, within ABZR87_RS01995at 425.753 kb on + strand, within ABZR87_RS01995at 425.754 kb on - strand, within ABZR87_RS01995at 425.754 kb on - strand, within ABZR87_RS01995at 425.780 kb on - strand, within ABZR87_RS01995at 425.787 kb on - strand, within ABZR87_RS01995at 425.843 kb on + strand, within ABZR87_RS01995at 425.843 kb on + strand, within ABZR87_RS01995at 425.844 kb on - strand, within ABZR87_RS01995at 425.879 kb on + strand, within ABZR87_RS01995at 425.879 kb on + strand, within ABZR87_RS01995at 425.879 kb on + strand, within ABZR87_RS01995at 425.880 kb on - strand, within ABZR87_RS01995at 425.880 kb on - strand, within ABZR87_RS01995at 425.880 kb on - strand, within ABZR87_RS01995at 425.919 kb on - strand, within ABZR87_RS01995at 425.981 kb on + strand, within ABZR87_RS01995at 425.981 kb on + strand, within ABZR87_RS01995at 425.982 kb on - strand, within ABZR87_RS01995at 425.982 kb on - strand, within ABZR87_RS01995at 425.982 kb on - strand, within ABZR87_RS01995at 425.982 kb on - strand, within ABZR87_RS01995at 425.982 kb on - strand, within ABZR87_RS01995at 425.982 kb on - strand, within ABZR87_RS01995at 425.984 kb on + strand, within ABZR87_RS01995at 425.984 kb on + strand, within ABZR87_RS01995at 425.984 kb on + strand, within ABZR87_RS01995at 425.984 kb on + strand, within ABZR87_RS01995at 425.985 kb on - strand, within ABZR87_RS01995at 425.985 kb on - strand, within ABZR87_RS01995at 425.985 kb on - strand, within ABZR87_RS01995at 425.985 kb on - strand, within ABZR87_RS01995at 426.002 kb on + strand, within ABZR87_RS01995at 426.002 kb on + strand, within ABZR87_RS01995at 426.002 kb on + strand, within ABZR87_RS01995at 426.002 kb on + strand, within ABZR87_RS01995at 426.003 kb on - strand, within ABZR87_RS01995at 426.003 kb on - strand, within ABZR87_RS01995at 426.003 kb on - strand, within ABZR87_RS01995at 426.038 kb on + strand, within ABZR87_RS01995at 426.038 kb on + strand, within ABZR87_RS01995at 426.039 kb on - strand, within ABZR87_RS01995at 426.041 kb on + strand, within ABZR87_RS01995at 426.041 kb on + strand, within ABZR87_RS01995at 426.041 kb on + strand, within ABZR87_RS01995at 426.041 kb on + strand, within ABZR87_RS01995at 426.041 kb on + strand, within ABZR87_RS01995at 426.041 kb on + strand, within ABZR87_RS01995at 426.042 kb on - strand, within ABZR87_RS01995at 426.042 kb on - strand, within ABZR87_RS01995at 426.042 kb on - strand, within ABZR87_RS01995at 426.042 kb on - strand, within ABZR87_RS01995at 426.042 kb on - strand, within ABZR87_RS01995at 426.044 kb on + strand, within ABZR87_RS01995at 426.045 kb on - strand, within ABZR87_RS01995at 426.045 kb on - strand, within ABZR87_RS01995at 426.125 kb on + strand, within ABZR87_RS01995at 426.125 kb on + strand, within ABZR87_RS01995at 426.126 kb on - strand, within ABZR87_RS01995at 426.126 kb on - strand, within ABZR87_RS01995at 426.152 kb on + strand, within ABZR87_RS01995at 426.152 kb on + strand, within ABZR87_RS01995at 426.152 kb on + strand, within ABZR87_RS01995at 426.153 kb on - strand, within ABZR87_RS01995at 426.153 kb on - strand, within ABZR87_RS01995at 426.153 kb on - strand, within ABZR87_RS01995at 426.153 kb on - strand, within ABZR87_RS01995at 426.167 kb on + strand, within ABZR87_RS01995at 426.206 kb on + strand, within ABZR87_RS01995at 426.207 kb on - strand, within ABZR87_RS01995at 426.207 kb on - strand, within ABZR87_RS01995at 426.248 kb on + strandat 426.248 kb on + strandat 426.272 kb on + strandat 426.272 kb on + strandat 426.272 kb on + strandat 426.272 kb on + strandat 426.272 kb on + strandat 426.272 kb on + strandat 426.273 kb on - strandat 426.273 kb on - strandat 426.273 kb on - strandat 426.273 kb on - strandat 426.273 kb on - strandat 426.273 kb on - strandat 426.273 kb on - strandat 426.422 kb on + strandat 426.422 kb on + strandat 426.745 kb on - strand, within ABZR87_RS02000at 426.943 kb on - strand, within ABZR87_RS02000at 427.059 kb on + strand, within ABZR87_RS02000at 427.059 kb on + strand, within ABZR87_RS02000at 427.059 kb on + strand, within ABZR87_RS02000at 427.059 kb on + strand, within ABZR87_RS02000at 427.060 kb on - strand, within ABZR87_RS02000at 427.248 kb on + strand, within ABZR87_RS02000at 427.249 kb on - strand, within ABZR87_RS02000at 427.249 kb on - strand, within ABZR87_RS02000at 427.249 kb on - strand, within ABZR87_RS02000at 427.249 kb on - strand, within ABZR87_RS02000at 427.249 kb on - strand, within ABZR87_RS02000at 427.537 kb on + strandat 427.538 kb on - strandat 427.538 kb on - strandat 427.622 kb on + strandat 427.622 kb on + strandat 427.622 kb on + strandat 427.622 kb on + strandat 427.683 kb on + strandat 427.683 kb on + strandat 427.684 kb on - strandat 427.684 kb on - strandat 427.691 kb on - strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.692 kb on + strandat 427.693 kb on - strandat 427.693 kb on - strandat 427.693 kb on - strandat 427.693 kb on - strandat 427.693 kb on - strandat 427.693 kb on - strandat 427.698 kb on + strandat 427.698 kb on + strandat 427.698 kb on + strandat 427.698 kb on + strandat 427.698 kb on + strandat 427.699 kb on - strandat 427.699 kb on - strandat 427.699 kb on - strandat 427.699 kb on - strandat 427.699 kb on - strandat 427.699 kb on - strandat 427.699 kb on - strandat 427.800 kb on - strand, within ABZR87_RS02005at 427.879 kb on + strand, within ABZR87_RS02005at 427.880 kb on - strand, within ABZR87_RS02005at 427.880 kb on - strand, within ABZR87_RS02005at 427.880 kb on - strand, within ABZR87_RS02005at 427.880 kb on - strand, within ABZR87_RS02005at 427.880 kb on - strand, within ABZR87_RS02005at 427.926 kb on + strand, within ABZR87_RS02005at 427.926 kb on + strand, within ABZR87_RS02005at 427.927 kb on - strand, within ABZR87_RS02005at 428.140 kb on + strand, within ABZR87_RS02005at 428.141 kb on - strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.217 kb on + strand, within ABZR87_RS02005at 428.218 kb on - strand, within ABZR87_RS02005at 428.218 kb on - strand, within ABZR87_RS02005at 428.218 kb on - strand, within ABZR87_RS02005at 428.218 kb on - strand, within ABZR87_RS02005at 428.218 kb on - strand, within ABZR87_RS02005at 428.218 kb on - strand, within ABZR87_RS02005at 428.307 kb on - strand, within ABZR87_RS02005at 428.358 kb on + strand, within ABZR87_RS02005at 428.358 kb on + strand, within ABZR87_RS02005at 428.358 kb on + strand, within ABZR87_RS02005at 428.358 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.370 kb on + strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.371 kb on - strand, within ABZR87_RS02005at 428.372 kb on + strand, within ABZR87_RS02005at 428.372 kb on + strand, within ABZR87_RS02005at 428.373 kb on - strand, within ABZR87_RS02005at 428.373 kb on - strand, within ABZR87_RS02005at 428.373 kb on - strand, within ABZR87_RS02005at 428.373 kb on - strand, within ABZR87_RS02005at 428.397 kb on + strand, within ABZR87_RS02005at 428.398 kb on - strand, within ABZR87_RS02005

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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425,537 + ABZR87_RS01995 0.32 +0.3
425,537 + ABZR87_RS01995 0.32 -0.2
425,537 + ABZR87_RS01995 0.32 -1.3
425,537 + ABZR87_RS01995 0.32 +0.0
425,537 + ABZR87_RS01995 0.32 -0.3
425,538 - ABZR87_RS01995 0.32 -0.1
425,538 - ABZR87_RS01995 0.32 -0.3
425,538 - ABZR87_RS01995 0.32 +0.0
425,538 - ABZR87_RS01995 0.32 +0.8
425,538 - ABZR87_RS01995 0.32 +2.4
425,538 - ABZR87_RS01995 0.32 +0.4
425,582 + ABZR87_RS01995 0.36 -0.0
425,594 + ABZR87_RS01995 0.37 -1.3
425,594 + ABZR87_RS01995 0.37 +0.2
425,595 - ABZR87_RS01995 0.37 +0.6
425,595 - ABZR87_RS01995 0.37 -0.3
425,595 - ABZR87_RS01995 0.37 +0.1
425,595 - ABZR87_RS01995 0.37 -1.8
425,651 + ABZR87_RS01995 0.42 +0.2
425,651 + ABZR87_RS01995 0.42 +1.1
425,651 + ABZR87_RS01995 0.42 +0.8
425,651 + ABZR87_RS01995 0.42 -0.7
425,651 + ABZR87_RS01995 0.42 +1.1
425,652 - ABZR87_RS01995 0.42 -0.8
425,652 - ABZR87_RS01995 0.42 -0.4
425,753 + ABZR87_RS01995 0.50 +0.4
425,753 + ABZR87_RS01995 0.50 +0.6
425,754 - ABZR87_RS01995 0.50 +1.0
425,754 - ABZR87_RS01995 0.50 +0.6
425,780 - ABZR87_RS01995 0.53 -0.5
425,787 - ABZR87_RS01995 0.53 -0.6
425,843 + ABZR87_RS01995 0.58 +0.5
425,843 + ABZR87_RS01995 0.58 -0.2
425,844 - ABZR87_RS01995 0.58 -0.5
425,879 + ABZR87_RS01995 0.61 -0.1
425,879 + ABZR87_RS01995 0.61 +2.9
425,879 + ABZR87_RS01995 0.61 -0.3
425,880 - ABZR87_RS01995 0.61 +0.2
425,880 - ABZR87_RS01995 0.61 -0.0
425,880 - ABZR87_RS01995 0.61 -0.6
425,919 - ABZR87_RS01995 0.64 +0.3
425,981 + ABZR87_RS01995 0.70 +0.8
425,981 + ABZR87_RS01995 0.70 -1.5
425,982 - ABZR87_RS01995 0.70 +1.5
425,982 - ABZR87_RS01995 0.70 -0.7
425,982 - ABZR87_RS01995 0.70 +0.3
425,982 - ABZR87_RS01995 0.70 -0.4
425,982 - ABZR87_RS01995 0.70 +0.2
425,982 - ABZR87_RS01995 0.70 +0.1
425,984 + ABZR87_RS01995 0.70 +1.9
425,984 + ABZR87_RS01995 0.70 +0.6
425,984 + ABZR87_RS01995 0.70 -0.0
425,984 + ABZR87_RS01995 0.70 +0.5
425,985 - ABZR87_RS01995 0.70 -0.7
425,985 - ABZR87_RS01995 0.70 +0.0
425,985 - ABZR87_RS01995 0.70 -0.1
425,985 - ABZR87_RS01995 0.70 -1.6
426,002 + ABZR87_RS01995 0.72 -0.2
426,002 + ABZR87_RS01995 0.72 -0.3
426,002 + ABZR87_RS01995 0.72 +0.2
426,002 + ABZR87_RS01995 0.72 +0.4
426,003 - ABZR87_RS01995 0.72 -0.6
426,003 - ABZR87_RS01995 0.72 -0.2
426,003 - ABZR87_RS01995 0.72 -1.5
426,038 + ABZR87_RS01995 0.75 -0.5
426,038 + ABZR87_RS01995 0.75 -1.6
426,039 - ABZR87_RS01995 0.75 +0.5
426,041 + ABZR87_RS01995 0.75 +0.1
426,041 + ABZR87_RS01995 0.75 +0.8
426,041 + ABZR87_RS01995 0.75 -0.4
426,041 + ABZR87_RS01995 0.75 +0.5
426,041 + ABZR87_RS01995 0.75 +0.4
426,041 + ABZR87_RS01995 0.75 -1.3
426,042 - ABZR87_RS01995 0.75 -3.0
426,042 - ABZR87_RS01995 0.75 -0.1
426,042 - ABZR87_RS01995 0.75 -0.2
426,042 - ABZR87_RS01995 0.75 +0.9
426,042 - ABZR87_RS01995 0.75 +0.4
426,044 + ABZR87_RS01995 0.75 +0.6
426,045 - ABZR87_RS01995 0.75 +0.5
426,045 - ABZR87_RS01995 0.75 +0.3
426,125 + ABZR87_RS01995 0.82 +0.3
426,125 + ABZR87_RS01995 0.82 +1.7
426,126 - ABZR87_RS01995 0.82 +0.6
426,126 - ABZR87_RS01995 0.82 +1.2
426,152 + ABZR87_RS01995 0.84 +0.2
426,152 + ABZR87_RS01995 0.84 -0.6
426,152 + ABZR87_RS01995 0.84 +0.0
426,153 - ABZR87_RS01995 0.84 -3.2
426,153 - ABZR87_RS01995 0.84 +0.3
426,153 - ABZR87_RS01995 0.84 +0.6
426,153 - ABZR87_RS01995 0.84 +0.1
426,167 + ABZR87_RS01995 0.85 -1.1
426,206 + ABZR87_RS01995 0.89 +0.0
426,207 - ABZR87_RS01995 0.89 -0.3
426,207 - ABZR87_RS01995 0.89 +0.0
426,248 + -0.4
426,248 + +0.6
426,272 + +0.7
426,272 + -0.3
426,272 + +0.9
426,272 + +0.6
426,272 + -1.7
426,272 + -1.0
426,273 - +0.0
426,273 - -0.4
426,273 - +0.5
426,273 - -0.2
426,273 - +0.8
426,273 - +0.1
426,273 - +1.8
426,422 + +0.8
426,422 + +0.2
426,745 - ABZR87_RS02000 0.28 +1.3
426,943 - ABZR87_RS02000 0.47 +0.3
427,059 + ABZR87_RS02000 0.58 +0.5
427,059 + ABZR87_RS02000 0.58 -0.2
427,059 + ABZR87_RS02000 0.58 +0.1
427,059 + ABZR87_RS02000 0.58 +0.0
427,060 - ABZR87_RS02000 0.59 +0.6
427,248 + ABZR87_RS02000 0.77 +0.2
427,249 - ABZR87_RS02000 0.77 -0.2
427,249 - ABZR87_RS02000 0.77 +0.1
427,249 - ABZR87_RS02000 0.77 +1.0
427,249 - ABZR87_RS02000 0.77 -0.6
427,249 - ABZR87_RS02000 0.77 +0.4
427,537 + -0.4
427,538 - -0.2
427,538 - -2.4
427,622 + +4.0
427,622 + +2.3
427,622 + -0.6
427,622 + +0.5
427,683 + +1.3
427,683 + -0.4
427,684 - -0.5
427,684 - +0.8
427,691 - +0.4
427,692 + +0.2
427,692 + +1.0
427,692 + +0.0
427,692 + -0.4
427,692 + +1.4
427,692 + +0.4
427,692 + -1.3
427,692 + +0.6
427,692 + +5.8
427,692 + -0.0
427,693 - -0.7
427,693 - -0.5
427,693 - -0.7
427,693 - +1.0
427,693 - -0.6
427,693 - -0.7
427,698 + -0.6
427,698 + +1.5
427,698 + +0.3
427,698 + +2.4
427,698 + +0.3
427,699 - -0.5
427,699 - -0.5
427,699 - -0.4
427,699 - -1.7
427,699 - +0.5
427,699 - -0.7
427,699 - +0.5
427,800 - ABZR87_RS02005 0.17 -1.4
427,879 + ABZR87_RS02005 0.23 -0.8
427,880 - ABZR87_RS02005 0.23 +1.1
427,880 - ABZR87_RS02005 0.23 +0.0
427,880 - ABZR87_RS02005 0.23 +1.1
427,880 - ABZR87_RS02005 0.23 -0.5
427,880 - ABZR87_RS02005 0.23 +1.0
427,926 + ABZR87_RS02005 0.27 -1.2
427,926 + ABZR87_RS02005 0.27 +1.1
427,927 - ABZR87_RS02005 0.27 +0.6
428,140 + ABZR87_RS02005 0.43 -0.3
428,141 - ABZR87_RS02005 0.43 -0.4
428,217 + ABZR87_RS02005 0.49 -0.8
428,217 + ABZR87_RS02005 0.49 -0.4
428,217 + ABZR87_RS02005 0.49 +0.9
428,217 + ABZR87_RS02005 0.49 +0.3
428,217 + ABZR87_RS02005 0.49 -2.1
428,217 + ABZR87_RS02005 0.49 +0.4
428,217 + ABZR87_RS02005 0.49 -0.5
428,217 + ABZR87_RS02005 0.49 +0.3
428,217 + ABZR87_RS02005 0.49 +0.8
428,217 + ABZR87_RS02005 0.49 +1.0
428,218 - ABZR87_RS02005 0.49 -0.0
428,218 - ABZR87_RS02005 0.49 -1.4
428,218 - ABZR87_RS02005 0.49 -0.2
428,218 - ABZR87_RS02005 0.49 +0.6
428,218 - ABZR87_RS02005 0.49 +2.0
428,218 - ABZR87_RS02005 0.49 +0.3
428,307 - ABZR87_RS02005 0.56 -0.7
428,358 + ABZR87_RS02005 0.60 -1.4
428,358 + ABZR87_RS02005 0.60 +0.5
428,358 + ABZR87_RS02005 0.60 -1.0
428,358 + ABZR87_RS02005 0.60 -3.0
428,370 + ABZR87_RS02005 0.61 -0.6
428,370 + ABZR87_RS02005 0.61 -1.6
428,370 + ABZR87_RS02005 0.61 +2.0
428,370 + ABZR87_RS02005 0.61 -1.1
428,370 + ABZR87_RS02005 0.61 +0.7
428,370 + ABZR87_RS02005 0.61 +0.3
428,370 + ABZR87_RS02005 0.61 +3.0
428,370 + ABZR87_RS02005 0.61 +1.4
428,371 - ABZR87_RS02005 0.61 -0.7
428,371 - ABZR87_RS02005 0.61 -0.8
428,371 - ABZR87_RS02005 0.61 +0.2
428,371 - ABZR87_RS02005 0.61 -0.8
428,371 - ABZR87_RS02005 0.61 +1.0
428,371 - ABZR87_RS02005 0.61 +0.2
428,371 - ABZR87_RS02005 0.61 +0.1
428,371 - ABZR87_RS02005 0.61 +1.0
428,371 - ABZR87_RS02005 0.61 -1.0
428,371 - ABZR87_RS02005 0.61 +1.2
428,371 - ABZR87_RS02005 0.61 -0.1
428,371 - ABZR87_RS02005 0.61 +0.1
428,372 + ABZR87_RS02005 0.61 +0.6
428,372 + ABZR87_RS02005 0.61 -1.7
428,373 - ABZR87_RS02005 0.61 +2.8
428,373 - ABZR87_RS02005 0.61 +0.6
428,373 - ABZR87_RS02005 0.61 -0.3
428,373 - ABZR87_RS02005 0.61 -0.2
428,397 + ABZR87_RS02005 0.63 +0.8
428,398 - ABZR87_RS02005 0.63 -0.8

Or see this region's nucleotide sequence