Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01895 and ABZR87_RS01900 are separated by 69 nucleotides ABZR87_RS01900 and ABZR87_RS01905 are separated by 49 nucleotides ABZR87_RS01905 and ABZR87_RS01910 are separated by 244 nucleotides
ABZR87_RS01895: ABZR87_RS01895 - M23 family metallopeptidase, at 402,415 to 403,377
_RS01895
ABZR87_RS01900: ABZR87_RS01900 - DciA family protein, at 403,447 to 403,968
_RS01900
ABZR87_RS01905: ABZR87_RS01905 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 404,018 to 404,935
_RS01905
ABZR87_RS01910: ABZR87_RS01910 - peroxiredoxin, at 405,180 to 405,680
_RS01910
Position (kb) 404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.260 kb on + strand, within ABZR87_RS01895 at 403.260 kb on + strand, within ABZR87_RS01895 at 403.260 kb on + strand, within ABZR87_RS01895 at 403.261 kb on - strand, within ABZR87_RS01895 at 403.261 kb on - strand, within ABZR87_RS01895 at 403.261 kb on - strand, within ABZR87_RS01895 at 403.368 kb on + strand at 403.368 kb on + strand at 403.369 kb on - strand at 403.369 kb on - strand at 403.369 kb on - strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.436 kb on - strand at 403.436 kb on - strand at 403.436 kb on - strand at 403.966 kb on + strand at 403.967 kb on - strand at 403.997 kb on - strand at 404.978 kb on - strand at 404.978 kb on - strand at 404.991 kb on - strand at 404.991 kb on - strand at 405.057 kb on + strand at 405.057 kb on + strand at 405.058 kb on - strand at 405.058 kb on - strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.085 kb on - strand at 405.146 kb on + strand at 405.147 kb on - strand at 405.253 kb on - strand, within ABZR87_RS01910 at 405.281 kb on - strand, within ABZR87_RS01910 at 405.622 kb on + strand, within ABZR87_RS01910 at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 403,260 + ABZR87_RS01895 0.88 -1.5 403,260 + ABZR87_RS01895 0.88 -0.9 403,260 + ABZR87_RS01895 0.88 +0.2 403,261 - ABZR87_RS01895 0.88 +0.6 403,261 - ABZR87_RS01895 0.88 -0.5 403,261 - ABZR87_RS01895 0.88 -1.2 403,368 + +0.2 403,368 + -0.5 403,369 - +0.4 403,369 - -0.8 403,369 - -0.0 403,435 + -0.4 403,435 + +0.0 403,435 + +0.8 403,435 + -0.3 403,435 + -0.6 403,435 + +0.5 403,435 + -0.4 403,435 + +1.0 403,435 + +1.4 403,436 - +0.1 403,436 - -0.6 403,436 - +0.2 403,966 + -0.5 403,967 - +0.0 403,997 - +0.2 404,978 - -1.3 404,978 - -0.6 404,991 - +1.4 404,991 - +0.2 405,057 + +0.5 405,057 + +1.4 405,058 - -2.4 405,058 - +0.2 405,084 + -0.2 405,084 + +2.2 405,084 + -1.7 405,084 + -1.2 405,084 + +0.5 405,084 + -0.8 405,085 - +0.7 405,146 + -0.7 405,147 - -1.2 405,253 - ABZR87_RS01910 0.15 -0.1 405,281 - ABZR87_RS01910 0.20 -0.2 405,622 + ABZR87_RS01910 0.88 +0.0 405,717 + -0.6 405,717 + -1.3 405,717 + -0.4 405,717 + -0.9 405,717 + -1.0 405,717 + +0.1 405,717 + -0.7 405,717 + +0.3 405,717 + -0.7 405,718 - -1.4 405,718 - -0.0 405,718 - +0.6 405,718 - +1.0 405,718 - +0.0 405,718 - -0.8 405,718 - +0.8 405,718 - +0.4 405,718 - -0.6 405,718 - -0.5 405,718 - -0.3 405,751 - -1.1
Or see this region's nucleotide sequence