Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01090

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01080 and ABZR87_RS01085 are separated by 94 nucleotidesABZR87_RS01085 and ABZR87_RS01090 overlap by 4 nucleotidesABZR87_RS01090 and ABZR87_RS01095 are separated by 176 nucleotides ABZR87_RS01080: ABZR87_RS01080 - S8 family serine peptidase, at 217,347 to 219,401 _RS01080 ABZR87_RS01085: ABZR87_RS01085 - rhombosortase, at 219,496 to 220,116 _RS01085 ABZR87_RS01090: ABZR87_RS01090 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 220,113 to 222,956 _RS01090 ABZR87_RS01095: ABZR87_RS01095 - YhdP family protein, at 223,133 to 227,422 _RS01095 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 219.117 kb on + strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.153 kb on + strand, within ABZR87_RS01080at 219.153 kb on + strand, within ABZR87_RS01080at 219.153 kb on + strand, within ABZR87_RS01080at 219.154 kb on - strand, within ABZR87_RS01080at 219.408 kb on - strandat 219.408 kb on - strandat 219.589 kb on + strand, within ABZR87_RS01085at 219.589 kb on + strand, within ABZR87_RS01085at 219.589 kb on + strand, within ABZR87_RS01085at 219.590 kb on - strand, within ABZR87_RS01085at 220.011 kb on - strand, within ABZR87_RS01085at 220.011 kb on - strand, within ABZR87_RS01085at 220.026 kb on - strand, within ABZR87_RS01085at 220.178 kb on + strandat 220.178 kb on + strandat 220.179 kb on - strandat 220.179 kb on - strandat 220.250 kb on - strandat 220.535 kb on + strand, within ABZR87_RS01090at 220.742 kb on + strand, within ABZR87_RS01090at 220.786 kb on + strand, within ABZR87_RS01090at 220.786 kb on + strand, within ABZR87_RS01090at 220.787 kb on - strand, within ABZR87_RS01090at 220.787 kb on - strand, within ABZR87_RS01090at 220.820 kb on - strand, within ABZR87_RS01090at 220.850 kb on - strand, within ABZR87_RS01090at 220.879 kb on + strand, within ABZR87_RS01090at 220.880 kb on - strand, within ABZR87_RS01090at 221.212 kb on + strand, within ABZR87_RS01090at 221.212 kb on + strand, within ABZR87_RS01090at 221.213 kb on - strand, within ABZR87_RS01090at 221.213 kb on - strand, within ABZR87_RS01090at 221.273 kb on - strand, within ABZR87_RS01090at 221.293 kb on + strand, within ABZR87_RS01090at 221.293 kb on + strand, within ABZR87_RS01090at 221.294 kb on - strand, within ABZR87_RS01090at 221.294 kb on - strand, within ABZR87_RS01090at 221.437 kb on + strand, within ABZR87_RS01090at 221.669 kb on - strand, within ABZR87_RS01090at 221.752 kb on + strand, within ABZR87_RS01090at 221.753 kb on - strand, within ABZR87_RS01090at 221.753 kb on - strand, within ABZR87_RS01090at 221.753 kb on - strand, within ABZR87_RS01090at 221.753 kb on - strand, within ABZR87_RS01090at 221.789 kb on - strand, within ABZR87_RS01090at 221.871 kb on + strand, within ABZR87_RS01090at 221.871 kb on + strand, within ABZR87_RS01090at 221.872 kb on - strand, within ABZR87_RS01090at 221.872 kb on - strand, within ABZR87_RS01090at 221.872 kb on - strand, within ABZR87_RS01090at 222.094 kb on + strand, within ABZR87_RS01090at 222.095 kb on - strand, within ABZR87_RS01090at 222.095 kb on - strand, within ABZR87_RS01090at 222.154 kb on + strand, within ABZR87_RS01090at 222.154 kb on + strand, within ABZR87_RS01090at 222.199 kb on + strand, within ABZR87_RS01090at 222.232 kb on + strand, within ABZR87_RS01090at 222.232 kb on + strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.313 kb on + strand, within ABZR87_RS01090at 222.313 kb on + strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.373 kb on + strand, within ABZR87_RS01090at 222.373 kb on + strand, within ABZR87_RS01090at 222.373 kb on + strand, within ABZR87_RS01090at 222.374 kb on - strand, within ABZR87_RS01090at 222.427 kb on + strand, within ABZR87_RS01090at 222.428 kb on - strand, within ABZR87_RS01090at 222.862 kb on + strandat 223.117 kb on + strandat 223.123 kb on - strandat 223.475 kb on + strandat 223.475 kb on + strandat 223.475 kb on + strandat 223.476 kb on - strandat 223.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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219,117 + ABZR87_RS01080 0.86 -0.1
219,118 - ABZR87_RS01080 0.86 +1.3
219,118 - ABZR87_RS01080 0.86 -0.4
219,118 - ABZR87_RS01080 0.86 +0.1
219,118 - ABZR87_RS01080 0.86 -0.9
219,153 + ABZR87_RS01080 0.88 +0.4
219,153 + ABZR87_RS01080 0.88 +0.7
219,153 + ABZR87_RS01080 0.88 -0.6
219,154 - ABZR87_RS01080 0.88 -0.1
219,408 - +0.2
219,408 - -0.6
219,589 + ABZR87_RS01085 0.15 -3.7
219,589 + ABZR87_RS01085 0.15 -1.5
219,589 + ABZR87_RS01085 0.15 -2.1
219,590 - ABZR87_RS01085 0.15 -2.3
220,011 - ABZR87_RS01085 0.83 -2.3
220,011 - ABZR87_RS01085 0.83 -1.9
220,026 - ABZR87_RS01085 0.85 -2.7
220,178 + -3.6
220,178 + -1.5
220,179 - -2.0
220,179 - -0.9
220,250 - +0.1
220,535 + ABZR87_RS01090 0.15 -2.4
220,742 + ABZR87_RS01090 0.22 -1.2
220,786 + ABZR87_RS01090 0.24 -1.0
220,786 + ABZR87_RS01090 0.24 -0.9
220,787 - ABZR87_RS01090 0.24 -1.6
220,787 - ABZR87_RS01090 0.24 +1.2
220,820 - ABZR87_RS01090 0.25 -2.0
220,850 - ABZR87_RS01090 0.26 -2.2
220,879 + ABZR87_RS01090 0.27 -2.5
220,880 - ABZR87_RS01090 0.27 +0.5
221,212 + ABZR87_RS01090 0.39 +0.4
221,212 + ABZR87_RS01090 0.39 -2.0
221,213 - ABZR87_RS01090 0.39 -0.5
221,213 - ABZR87_RS01090 0.39 -1.6
221,273 - ABZR87_RS01090 0.41 -0.3
221,293 + ABZR87_RS01090 0.41 -2.3
221,293 + ABZR87_RS01090 0.41 -0.1
221,294 - ABZR87_RS01090 0.42 -0.4
221,294 - ABZR87_RS01090 0.42 +0.6
221,437 + ABZR87_RS01090 0.47 -2.8
221,669 - ABZR87_RS01090 0.55 -1.0
221,752 + ABZR87_RS01090 0.58 +0.3
221,753 - ABZR87_RS01090 0.58 -0.5
221,753 - ABZR87_RS01090 0.58 +0.2
221,753 - ABZR87_RS01090 0.58 -1.4
221,753 - ABZR87_RS01090 0.58 +2.2
221,789 - ABZR87_RS01090 0.59 -0.9
221,871 + ABZR87_RS01090 0.62 -1.5
221,871 + ABZR87_RS01090 0.62 -1.7
221,872 - ABZR87_RS01090 0.62 -0.7
221,872 - ABZR87_RS01090 0.62 -0.6
221,872 - ABZR87_RS01090 0.62 -1.1
222,094 + ABZR87_RS01090 0.70 -0.6
222,095 - ABZR87_RS01090 0.70 -1.1
222,095 - ABZR87_RS01090 0.70 +0.0
222,154 + ABZR87_RS01090 0.72 +0.0
222,154 + ABZR87_RS01090 0.72 -1.0
222,199 + ABZR87_RS01090 0.73 -2.1
222,232 + ABZR87_RS01090 0.75 +2.0
222,232 + ABZR87_RS01090 0.75 -1.3
222,233 - ABZR87_RS01090 0.75 +0.8
222,233 - ABZR87_RS01090 0.75 -0.6
222,233 - ABZR87_RS01090 0.75 -1.5
222,233 - ABZR87_RS01090 0.75 -0.1
222,233 - ABZR87_RS01090 0.75 +2.9
222,233 - ABZR87_RS01090 0.75 -0.1
222,313 + ABZR87_RS01090 0.77 -0.7
222,313 + ABZR87_RS01090 0.77 -0.6
222,314 - ABZR87_RS01090 0.77 -1.1
222,314 - ABZR87_RS01090 0.77 -0.8
222,314 - ABZR87_RS01090 0.77 -0.5
222,314 - ABZR87_RS01090 0.77 -2.0
222,373 + ABZR87_RS01090 0.79 -0.6
222,373 + ABZR87_RS01090 0.79 +0.6
222,373 + ABZR87_RS01090 0.79 -2.2
222,374 - ABZR87_RS01090 0.80 -0.8
222,427 + ABZR87_RS01090 0.81 -2.0
222,428 - ABZR87_RS01090 0.81 +2.6
222,862 + -3.0
223,117 + +0.7
223,123 - +1.4
223,475 + -2.1
223,475 + +0.5
223,475 + -2.6
223,476 - -3.4
223,476 - +0.8

Or see this region's nucleotide sequence