Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3650 and Rru_A3651 are separated by 115 nucleotides Rru_A3651 and Rru_A3652 overlap by 4 nucleotides Rru_A3652 and Rru_A3653 overlap by 4 nucleotides
Rru_A3650: Rru_A3650 - Lipolytic enzyme, G-D-S-L (NCBI), at 4,189,095 to 4,189,700
_A3650
Rru_A3651: Rru_A3651 - ABC transporter component (NCBI), at 4,189,816 to 4,190,529
_A3651
Rru_A3652: Rru_A3652 - hypothetical protein (NCBI), at 4,190,526 to 4,191,257
_A3652
Rru_A3653: Rru_A3653 - Protein of unknown function DUF214 (NCBI), at 4,191,254 to 4,193,797
_A3653
Position (kb) 4190
4191
4192 Strain fitness (log2 ratio) -1
0
1 at 4189.622 kb on - strand, within Rru_A3650 at 4189.700 kb on + strand at 4189.700 kb on + strand at 4189.701 kb on - strand at 4189.701 kb on - strand at 4189.701 kb on - strand at 4189.825 kb on - strand at 4189.842 kb on + strand at 4189.842 kb on + strand at 4189.842 kb on + strand at 4189.842 kb on + strand at 4189.843 kb on - strand at 4189.843 kb on - strand at 4189.843 kb on - strand at 4190.412 kb on + strand, within Rru_A3651 at 4190.412 kb on + strand, within Rru_A3651 at 4190.412 kb on + strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.693 kb on + strand, within Rru_A3652 at 4190.693 kb on + strand, within Rru_A3652 at 4190.693 kb on + strand, within Rru_A3652 at 4190.932 kb on - strand, within Rru_A3652 at 4191.470 kb on + strand at 4191.533 kb on - strand, within Rru_A3653 at 4191.533 kb on - strand, within Rru_A3653 at 4191.626 kb on + strand, within Rru_A3653 at 4191.626 kb on + strand, within Rru_A3653 at 4191.626 kb on + strand, within Rru_A3653 at 4191.626 kb on + strand, within Rru_A3653 at 4191.626 kb on + strand, within Rru_A3653 at 4191.627 kb on - strand, within Rru_A3653 at 4191.627 kb on - strand, within Rru_A3653 at 4191.627 kb on - strand, within Rru_A3653 at 4191.905 kb on + strand, within Rru_A3653 at 4191.906 kb on - strand, within Rru_A3653 at 4192.124 kb on + strand, within Rru_A3653 at 4192.124 kb on + strand, within Rru_A3653 at 4192.199 kb on + strand, within Rru_A3653 at 4192.200 kb on - strand, within Rru_A3653 at 4192.200 kb on - strand, within Rru_A3653 at 4192.200 kb on - strand, within Rru_A3653 at 4192.200 kb on - strand, within Rru_A3653 at 4192.200 kb on - strand, within Rru_A3653 at 4192.202 kb on - strand, within Rru_A3653
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 4,189,622 - Rru_A3650 0.87 +0.1 4,189,700 + +1.1 4,189,700 + +0.0 4,189,701 - -1.0 4,189,701 - +1.0 4,189,701 - +1.0 4,189,825 - +0.0 4,189,842 + +0.6 4,189,842 + +0.5 4,189,842 + +1.0 4,189,842 + +1.5 4,189,843 - +0.4 4,189,843 - +0.0 4,189,843 - +0.0 4,190,412 + Rru_A3651 0.83 -0.7 4,190,412 + Rru_A3651 0.83 +1.2 4,190,412 + Rru_A3651 0.83 +0.1 4,190,413 - Rru_A3651 0.84 -0.2 4,190,413 - Rru_A3651 0.84 +0.3 4,190,413 - Rru_A3651 0.84 +0.3 4,190,413 - Rru_A3651 0.84 +0.3 4,190,413 - Rru_A3651 0.84 -1.0 4,190,413 - Rru_A3651 0.84 +1.2 4,190,693 + Rru_A3652 0.23 +1.3 4,190,693 + Rru_A3652 0.23 -1.0 4,190,693 + Rru_A3652 0.23 +0.0 4,190,932 - Rru_A3652 0.55 +0.9 4,191,470 + +0.0 4,191,533 - Rru_A3653 0.11 +0.0 4,191,533 - Rru_A3653 0.11 +0.0 4,191,626 + Rru_A3653 0.15 +0.8 4,191,626 + Rru_A3653 0.15 +1.0 4,191,626 + Rru_A3653 0.15 +0.0 4,191,626 + Rru_A3653 0.15 +0.0 4,191,626 + Rru_A3653 0.15 +0.0 4,191,627 - Rru_A3653 0.15 +0.2 4,191,627 - Rru_A3653 0.15 +0.5 4,191,627 - Rru_A3653 0.15 +0.0 4,191,905 + Rru_A3653 0.26 +0.5 4,191,906 - Rru_A3653 0.26 -0.5 4,192,124 + Rru_A3653 0.34 -0.1 4,192,124 + Rru_A3653 0.34 +0.5 4,192,199 + Rru_A3653 0.37 +1.2 4,192,200 - Rru_A3653 0.37 +0.3 4,192,200 - Rru_A3653 0.37 +0.0 4,192,200 - Rru_A3653 0.37 -0.2 4,192,200 - Rru_A3653 0.37 +0.3 4,192,200 - Rru_A3653 0.37 +0.0 4,192,202 - Rru_A3653 0.37 +0.1
Or see this region's nucleotide sequence