Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3596 and Rru_A3597 are separated by 308 nucleotides Rru_A3597 and Rru_A3598 are separated by 179 nucleotides Rru_A3598 and Rru_A3599 are separated by 293 nucleotides
Rru_A3596: Rru_A3596 - Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI), at 4,137,979 to 4,138,623
_A3596
Rru_A3597: Rru_A3597 - Imidazoleglycerol-phosphate dehydratase (NCBI), at 4,138,932 to 4,139,531
_A3597
Rru_A3598: Rru_A3598 - Transcriptional Regulator, XRE family (NCBI), at 4,139,711 to 4,140,181
_A3598
Rru_A3599: Rru_A3599 - 20S proteasome, A and B subunits (NCBI), at 4,140,475 to 4,141,038
_A3599
Position (kb)
4138
4139
4140 Strain fitness (log2 ratio)
-2
-1
0
1 at 4138.148 kb on + strand, within Rru_A3596 at 4138.149 kb on - strand, within Rru_A3596 at 4138.149 kb on - strand, within Rru_A3596 at 4138.152 kb on + strand, within Rru_A3596 at 4138.153 kb on - strand, within Rru_A3596 at 4138.153 kb on - strand, within Rru_A3596 at 4138.153 kb on - strand, within Rru_A3596 at 4138.153 kb on - strand, within Rru_A3596 at 4138.153 kb on - strand, within Rru_A3596 at 4138.153 kb on - strand, within Rru_A3596 at 4138.163 kb on + strand, within Rru_A3596 at 4138.164 kb on - strand, within Rru_A3596 at 4138.322 kb on + strand, within Rru_A3596 at 4138.602 kb on - strand at 4138.858 kb on - strand at 4138.993 kb on - strand, within Rru_A3597 at 4138.993 kb on - strand, within Rru_A3597 at 4139.539 kb on - strand at 4139.539 kb on - strand at 4139.692 kb on + strand at 4139.692 kb on + strand at 4140.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 4,138,148 + Rru_A3596 0.26 -1.3 4,138,149 - Rru_A3596 0.26 +0.4 4,138,149 - Rru_A3596 0.26 +1.2 4,138,152 + Rru_A3596 0.27 +0.0 4,138,153 - Rru_A3596 0.27 +0.0 4,138,153 - Rru_A3596 0.27 +0.0 4,138,153 - Rru_A3596 0.27 +1.3 4,138,153 - Rru_A3596 0.27 +0.0 4,138,153 - Rru_A3596 0.27 +0.8 4,138,153 - Rru_A3596 0.27 -2.0 4,138,163 + Rru_A3596 0.29 -2.0 4,138,164 - Rru_A3596 0.29 -0.6 4,138,322 + Rru_A3596 0.53 +0.0 4,138,602 - +0.0 4,138,858 - +0.0 4,138,993 - Rru_A3597 0.10 +0.0 4,138,993 - Rru_A3597 0.10 +0.0 4,139,539 - +1.3 4,139,539 - +0.0 4,139,692 + +0.0 4,139,692 + -0.6 4,140,288 - +0.1
Or see this region's nucleotide sequence