Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3597

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3596 and Rru_A3597 are separated by 308 nucleotidesRru_A3597 and Rru_A3598 are separated by 179 nucleotidesRru_A3598 and Rru_A3599 are separated by 293 nucleotides Rru_A3596: Rru_A3596 - Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI), at 4,137,979 to 4,138,623 _A3596 Rru_A3597: Rru_A3597 - Imidazoleglycerol-phosphate dehydratase (NCBI), at 4,138,932 to 4,139,531 _A3597 Rru_A3598: Rru_A3598 - Transcriptional Regulator, XRE family (NCBI), at 4,139,711 to 4,140,181 _A3598 Rru_A3599: Rru_A3599 - 20S proteasome, A and B subunits (NCBI), at 4,140,475 to 4,141,038 _A3599 Position (kb) 4138 4139 4140Strain fitness (log2 ratio) -2 -1 0 1at 4138.148 kb on + strand, within Rru_A3596at 4138.149 kb on - strand, within Rru_A3596at 4138.149 kb on - strand, within Rru_A3596at 4138.152 kb on + strand, within Rru_A3596at 4138.153 kb on - strand, within Rru_A3596at 4138.153 kb on - strand, within Rru_A3596at 4138.153 kb on - strand, within Rru_A3596at 4138.153 kb on - strand, within Rru_A3596at 4138.153 kb on - strand, within Rru_A3596at 4138.153 kb on - strand, within Rru_A3596at 4138.163 kb on + strand, within Rru_A3596at 4138.164 kb on - strand, within Rru_A3596at 4138.322 kb on + strand, within Rru_A3596at 4138.602 kb on - strandat 4138.858 kb on - strandat 4138.993 kb on - strand, within Rru_A3597at 4138.993 kb on - strand, within Rru_A3597at 4139.539 kb on - strandat 4139.539 kb on - strandat 4139.692 kb on + strandat 4139.692 kb on + strandat 4140.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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4,138,148 + Rru_A3596 0.26 -1.3
4,138,149 - Rru_A3596 0.26 +0.4
4,138,149 - Rru_A3596 0.26 +1.2
4,138,152 + Rru_A3596 0.27 +0.0
4,138,153 - Rru_A3596 0.27 +0.0
4,138,153 - Rru_A3596 0.27 +0.0
4,138,153 - Rru_A3596 0.27 +1.3
4,138,153 - Rru_A3596 0.27 +0.0
4,138,153 - Rru_A3596 0.27 +0.8
4,138,153 - Rru_A3596 0.27 -2.0
4,138,163 + Rru_A3596 0.29 -2.0
4,138,164 - Rru_A3596 0.29 -0.6
4,138,322 + Rru_A3596 0.53 +0.0
4,138,602 - +0.0
4,138,858 - +0.0
4,138,993 - Rru_A3597 0.10 +0.0
4,138,993 - Rru_A3597 0.10 +0.0
4,139,539 - +1.3
4,139,539 - +0.0
4,139,692 + +0.0
4,139,692 + -0.6
4,140,288 - +0.1

Or see this region's nucleotide sequence