Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3151 and Rru_A3152 overlap by 4 nucleotides Rru_A3152 and Rru_A3153 are separated by 25 nucleotides
Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894
_A3151
Rru_A3152: Rru_A3152 - hypothetical protein (NCBI), at 3,637,891 to 3,638,922
_A3152
Rru_A3153: Rru_A3153 - conserved virulence factor protein (NCBI), at 3,638,948 to 3,641,653
_A3153
Position (kb)
3637
3638
3639 Strain fitness (log2 ratio)
-2
-1
0
1 at 3637.029 kb on + strand, within Rru_A3151 at 3637.030 kb on - strand, within Rru_A3151 at 3637.030 kb on - strand, within Rru_A3151 at 3637.030 kb on - strand, within Rru_A3151 at 3637.136 kb on + strand, within Rru_A3151 at 3637.137 kb on - strand, within Rru_A3151 at 3637.158 kb on + strand, within Rru_A3151 at 3637.159 kb on - strand, within Rru_A3151 at 3637.159 kb on - strand, within Rru_A3151 at 3637.303 kb on + strand, within Rru_A3151 at 3637.684 kb on - strand, within Rru_A3151 at 3637.763 kb on + strand at 3637.763 kb on + strand at 3637.763 kb on + strand at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.055 kb on - strand, within Rru_A3152 at 3638.057 kb on + strand, within Rru_A3152 at 3638.057 kb on + strand, within Rru_A3152 at 3638.057 kb on + strand, within Rru_A3152 at 3638.058 kb on - strand, within Rru_A3152 at 3638.058 kb on - strand, within Rru_A3152 at 3638.123 kb on + strand, within Rru_A3152 at 3638.124 kb on - strand, within Rru_A3152 at 3638.271 kb on - strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.646 kb on - strand, within Rru_A3152 at 3638.646 kb on - strand, within Rru_A3152 at 3638.789 kb on + strand, within Rru_A3152 at 3639.235 kb on - strand, within Rru_A3153 at 3639.266 kb on - strand, within Rru_A3153 at 3639.678 kb on + strand, within Rru_A3153 at 3639.678 kb on + strand, within Rru_A3153
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,637,029 + Rru_A3151 0.57 -0.0 3,637,030 - Rru_A3151 0.57 -0.0 3,637,030 - Rru_A3151 0.57 -0.0 3,637,030 - Rru_A3151 0.57 -0.0 3,637,136 + Rru_A3151 0.62 -0.0 3,637,137 - Rru_A3151 0.62 +1.6 3,637,158 + Rru_A3151 0.63 -0.0 3,637,159 - Rru_A3151 0.63 -0.0 3,637,159 - Rru_A3151 0.63 -0.0 3,637,303 + Rru_A3151 0.70 +0.2 3,637,684 - Rru_A3151 0.89 +0.1 3,637,763 + -0.0 3,637,763 + +1.0 3,637,763 + -1.0 3,638,054 + Rru_A3152 0.16 -1.0 3,638,054 + Rru_A3152 0.16 -1.0 3,638,054 + Rru_A3152 0.16 -2.4 3,638,054 + Rru_A3152 0.16 -0.0 3,638,054 + Rru_A3152 0.16 -0.0 3,638,054 + Rru_A3152 0.16 -0.0 3,638,055 - Rru_A3152 0.16 +0.7 3,638,057 + Rru_A3152 0.16 -1.0 3,638,057 + Rru_A3152 0.16 -0.0 3,638,057 + Rru_A3152 0.16 -0.0 3,638,058 - Rru_A3152 0.16 -0.0 3,638,058 - Rru_A3152 0.16 -0.0 3,638,123 + Rru_A3152 0.22 -1.6 3,638,124 - Rru_A3152 0.23 -0.0 3,638,271 - Rru_A3152 0.37 -0.0 3,638,645 + Rru_A3152 0.73 -0.0 3,638,645 + Rru_A3152 0.73 -0.0 3,638,645 + Rru_A3152 0.73 -1.0 3,638,645 + Rru_A3152 0.73 -0.0 3,638,646 - Rru_A3152 0.73 -1.6 3,638,646 - Rru_A3152 0.73 +0.2 3,638,789 + Rru_A3152 0.87 -0.0 3,639,235 - Rru_A3153 0.11 -0.0 3,639,266 - Rru_A3153 0.12 -0.9 3,639,678 + Rru_A3153 0.27 -1.0 3,639,678 + Rru_A3153 0.27 +0.6
Or see this region's nucleotide sequence