Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0808

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0805 and Rru_A0806 are separated by 3 nucleotidesRru_A0806 and Rru_A0807 overlap by 1 nucleotidesRru_A0807 and Rru_A0808 overlap by 4 nucleotides Rru_A0805: Rru_A0805 - conjugal transfer protein (NCBI), at 960,586 to 961,362 _A0805 Rru_A0806: Rru_A0806 - conjugal transfer protein (NCBI), at 961,366 to 961,635 _A0806 Rru_A0807: Rru_A0807 - Conjugal transfer protein TrbC (NCBI), at 961,635 to 961,967 _A0807 Rru_A0808: Rru_A0808 - type II secretion system protein E (NCBI), at 961,964 to 962,944 _A0808 Position (kb) 961 962 963Strain fitness (log2 ratio) -1 0 1 2at 961.357 kb on + strandat 961.357 kb on + strandat 961.357 kb on + strandat 961.358 kb on - strandat 961.379 kb on + strandat 961.379 kb on + strandat 961.379 kb on + strandat 961.380 kb on - strandat 961.380 kb on - strandat 961.723 kb on - strand, within Rru_A0807at 961.880 kb on - strand, within Rru_A0807at 961.880 kb on - strand, within Rru_A0807at 961.880 kb on - strand, within Rru_A0807at 961.916 kb on + strand, within Rru_A0807at 961.917 kb on - strand, within Rru_A0807at 961.917 kb on - strand, within Rru_A0807at 961.917 kb on - strand, within Rru_A0807at 962.005 kb on - strandat 962.050 kb on + strandat 962.262 kb on - strand, within Rru_A0808at 962.406 kb on - strand, within Rru_A0808at 962.491 kb on + strand, within Rru_A0808at 962.491 kb on + strand, within Rru_A0808at 962.491 kb on + strand, within Rru_A0808at 962.562 kb on + strand, within Rru_A0808at 962.562 kb on + strand, within Rru_A0808at 962.562 kb on + strand, within Rru_A0808at 962.563 kb on - strand, within Rru_A0808at 962.563 kb on - strand, within Rru_A0808at 962.944 kb on + strandat 962.945 kb on - strandat 962.945 kb on - strandat 962.945 kb on - strandat 962.999 kb on + strandat 962.999 kb on + strandat 962.999 kb on + strandat 963.000 kb on - strandat 963.015 kb on + strandat 963.046 kb on - strandat 963.046 kb on - strandat 963.151 kb on - strandat 963.217 kb on - strandat 963.272 kb on - strandat 963.272 kb on - strandat 963.329 kb on + strandat 963.329 kb on + strandat 963.330 kb on - strandat 963.573 kb on + strandat 963.574 kb on - strandat 963.578 kb on + strandat 963.590 kb on + strandat 963.590 kb on + strandat 963.591 kb on - strandat 963.679 kb on + strandat 963.679 kb on + strandat 963.680 kb on - strandat 963.732 kb on + strandat 963.795 kb on + strandat 963.795 kb on + strandat 963.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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961,357 + -0.0
961,357 + -0.0
961,357 + +0.2
961,358 - -0.0
961,379 + -0.4
961,379 + +0.1
961,379 + +0.1
961,380 - -0.0
961,380 - -0.0
961,723 - Rru_A0807 0.26 +0.2
961,880 - Rru_A0807 0.74 +1.2
961,880 - Rru_A0807 0.74 +0.7
961,880 - Rru_A0807 0.74 -0.0
961,916 + Rru_A0807 0.84 -0.3
961,917 - Rru_A0807 0.85 +2.1
961,917 - Rru_A0807 0.85 +0.6
961,917 - Rru_A0807 0.85 +1.0
962,005 - +0.0
962,050 + +0.4
962,262 - Rru_A0808 0.30 +0.7
962,406 - Rru_A0808 0.45 +0.6
962,491 + Rru_A0808 0.54 +0.5
962,491 + Rru_A0808 0.54 +0.6
962,491 + Rru_A0808 0.54 +0.4
962,562 + Rru_A0808 0.61 -0.0
962,562 + Rru_A0808 0.61 +1.0
962,562 + Rru_A0808 0.61 +0.3
962,563 - Rru_A0808 0.61 -0.0
962,563 - Rru_A0808 0.61 -0.0
962,944 + +0.3
962,945 - -0.3
962,945 - -0.0
962,945 - -0.0
962,999 + -0.5
962,999 + +0.0
962,999 + +1.3
963,000 - -0.7
963,015 + +0.2
963,046 - -0.0
963,046 - -0.0
963,151 - -0.0
963,217 - +0.9
963,272 - -0.0
963,272 - -0.0
963,329 + +0.2
963,329 + +0.1
963,330 - +1.1
963,573 + -0.1
963,574 - -0.0
963,578 + -0.0
963,590 + -0.7
963,590 + -0.0
963,591 - +0.0
963,679 + -0.2
963,679 + +0.4
963,680 - +0.4
963,732 + -0.0
963,795 + -0.1
963,795 + -0.0
963,944 + -0.1

Or see this region's nucleotide sequence