Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0719

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0718 and Rru_A0719 are separated by 133 nucleotidesRru_A0719 and Rru_A0720 are separated by 94 nucleotidesRru_A0720 and Rru_A0721 are separated by 52 nucleotides Rru_A0718: Rru_A0718 - chemotaxis sensory transducer (NCBI), at 845,848 to 847,857 _A0718 Rru_A0719: Rru_A0719 - hypothetical protein (NCBI), at 847,991 to 848,746 _A0719 Rru_A0720: Rru_A0720 - Transcriptional Regulator, MarR family (NCBI), at 848,841 to 849,335 _A0720 Rru_A0721: Rru_A0721 - Anti-Sigm factor, ChrR (NCBI), at 849,388 to 850,062 _A0721 Position (kb) 847 848 849Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 847.803 kb on + strandat 847.803 kb on + strandat 847.804 kb on - strandat 847.933 kb on + strandat 847.933 kb on + strandat 847.934 kb on - strandat 847.934 kb on - strandat 847.936 kb on + strandat 847.936 kb on + strandat 847.937 kb on - strandat 847.938 kb on + strandat 847.938 kb on + strandat 847.938 kb on + strandat 847.939 kb on - strandat 847.939 kb on - strandat 847.939 kb on - strandat 847.939 kb on - strandat 847.939 kb on - strandat 848.017 kb on - strandat 848.123 kb on + strand, within Rru_A0719at 848.124 kb on - strand, within Rru_A0719at 848.124 kb on - strand, within Rru_A0719at 848.135 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.225 kb on + strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.226 kb on - strand, within Rru_A0719at 848.291 kb on + strand, within Rru_A0719at 848.291 kb on + strand, within Rru_A0719at 848.291 kb on + strand, within Rru_A0719at 848.291 kb on + strand, within Rru_A0719at 848.291 kb on + strand, within Rru_A0719at 848.292 kb on - strand, within Rru_A0719at 848.861 kb on + strandat 848.862 kb on - strandat 848.862 kb on - strandat 848.862 kb on - strandat 849.060 kb on - strand, within Rru_A0720at 849.061 kb on + strand, within Rru_A0720at 849.062 kb on - strand, within Rru_A0720at 849.089 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.112 kb on + strand, within Rru_A0720at 849.112 kb on + strand, within Rru_A0720at 849.112 kb on + strand, within Rru_A0720at 849.113 kb on - strand, within Rru_A0720at 849.113 kb on - strand, within Rru_A0720at 849.113 kb on - strand, within Rru_A0720at 849.115 kb on + strand, within Rru_A0720at 849.165 kb on - strand, within Rru_A0720at 849.194 kb on + strand, within Rru_A0720at 849.194 kb on + strand, within Rru_A0720at 849.195 kb on - strand, within Rru_A0720at 849.195 kb on - strand, within Rru_A0720at 849.195 kb on - strand, within Rru_A0720at 849.284 kb on - strand, within Rru_A0720at 849.300 kb on + strandat 849.300 kb on + strandat 849.383 kb on + strandat 849.389 kb on + strandat 849.389 kb on + strandat 849.389 kb on + strandat 849.390 kb on - strandat 849.434 kb on + strandat 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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847,803 + -0.0
847,803 + -1.0
847,804 - +0.5
847,933 + -0.0
847,933 + +0.3
847,934 - -0.2
847,934 - -1.6
847,936 + +0.8
847,936 + +0.1
847,937 - -0.0
847,938 + -1.0
847,938 + -0.0
847,938 + -0.0
847,939 - -0.0
847,939 - -0.0
847,939 - -0.0
847,939 - -0.0
847,939 - +0.4
848,017 - +0.4
848,123 + Rru_A0719 0.17 +0.3
848,124 - Rru_A0719 0.18 -1.0
848,124 - Rru_A0719 0.18 +0.4
848,135 + Rru_A0719 0.19 -0.0
848,225 + Rru_A0719 0.31 +0.2
848,225 + Rru_A0719 0.31 +0.7
848,225 + Rru_A0719 0.31 -0.0
848,225 + Rru_A0719 0.31 +1.0
848,225 + Rru_A0719 0.31 -0.0
848,225 + Rru_A0719 0.31 -0.0
848,225 + Rru_A0719 0.31 +0.1
848,225 + Rru_A0719 0.31 +0.2
848,225 + Rru_A0719 0.31 +0.8
848,226 - Rru_A0719 0.31 -0.3
848,226 - Rru_A0719 0.31 +1.1
848,226 - Rru_A0719 0.31 -0.1
848,226 - Rru_A0719 0.31 +0.4
848,226 - Rru_A0719 0.31 +0.4
848,226 - Rru_A0719 0.31 +0.7
848,226 - Rru_A0719 0.31 -0.0
848,291 + Rru_A0719 0.40 -0.3
848,291 + Rru_A0719 0.40 -0.0
848,291 + Rru_A0719 0.40 +0.4
848,291 + Rru_A0719 0.40 +0.3
848,291 + Rru_A0719 0.40 +0.2
848,292 - Rru_A0719 0.40 +0.5
848,861 + +0.2
848,862 - -1.0
848,862 - -1.0
848,862 - +0.7
849,060 - Rru_A0720 0.44 -1.0
849,061 + Rru_A0720 0.44 +0.6
849,062 - Rru_A0720 0.45 +1.0
849,089 + Rru_A0720 0.50 -0.5
849,091 + Rru_A0720 0.51 -0.4
849,091 + Rru_A0720 0.51 +0.2
849,091 + Rru_A0720 0.51 +2.0
849,091 + Rru_A0720 0.51 +0.1
849,092 - Rru_A0720 0.51 -0.0
849,092 - Rru_A0720 0.51 +0.2
849,092 - Rru_A0720 0.51 +0.6
849,092 - Rru_A0720 0.51 -0.0
849,092 - Rru_A0720 0.51 -0.0
849,112 + Rru_A0720 0.55 -0.0
849,112 + Rru_A0720 0.55 +0.3
849,112 + Rru_A0720 0.55 -0.1
849,113 - Rru_A0720 0.55 -0.8
849,113 - Rru_A0720 0.55 +0.6
849,113 - Rru_A0720 0.55 +0.1
849,115 + Rru_A0720 0.55 -0.0
849,165 - Rru_A0720 0.65 -1.0
849,194 + Rru_A0720 0.71 -1.1
849,194 + Rru_A0720 0.71 -1.6
849,195 - Rru_A0720 0.72 -1.0
849,195 - Rru_A0720 0.72 -0.8
849,195 - Rru_A0720 0.72 -0.2
849,284 - Rru_A0720 0.89 -0.2
849,300 + -0.3
849,300 + -0.0
849,383 + -0.0
849,389 + -0.0
849,389 + -0.0
849,389 + -1.0
849,390 - -1.0
849,434 + +1.1
849,584 + Rru_A0721 0.29 +0.7
849,584 + Rru_A0721 0.29 +0.2
849,584 + Rru_A0721 0.29 -1.0
849,584 + Rru_A0721 0.29 -0.0
849,584 + Rru_A0721 0.29 -1.9
849,584 + Rru_A0721 0.29 -0.0
849,585 - Rru_A0721 0.29 -0.3
849,585 - Rru_A0721 0.29 -0.0
849,585 - Rru_A0721 0.29 -0.0
849,585 - Rru_A0721 0.29 -3.0
849,585 - Rru_A0721 0.29 -0.6
849,585 - Rru_A0721 0.29 -0.0
849,585 - Rru_A0721 0.29 -1.6

Or see this region's nucleotide sequence