Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0676 and Rru_A0677 are separated by 120 nucleotides Rru_A0677 and Rru_A0678 overlap by 4 nucleotides
Rru_A0676: Rru_A0676 - Transposase IS116/IS110/IS902 (NCBI), at 799,105 to 800,136
_A0676
Rru_A0677: Rru_A0677 - hypothetical protein (NCBI), at 800,257 to 800,802
_A0677
Rru_A0678: Rru_A0678 - Multi antimicrobial extrusion protein MatE (NCBI), at 800,799 to 802,190
_A0678
Position (kb) 800
801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.275 kb on - strand at 800.275 kb on - strand at 800.275 kb on - strand at 800.275 kb on - strand at 800.364 kb on + strand, within Rru_A0677 at 800.404 kb on + strand, within Rru_A0677 at 800.404 kb on + strand, within Rru_A0677 at 800.404 kb on + strand, within Rru_A0677 at 800.405 kb on - strand, within Rru_A0677 at 800.427 kb on + strand, within Rru_A0677 at 800.428 kb on - strand, within Rru_A0677 at 800.572 kb on + strand, within Rru_A0677 at 800.572 kb on + strand, within Rru_A0677 at 800.573 kb on - strand, within Rru_A0677 at 800.573 kb on - strand, within Rru_A0677 at 800.573 kb on - strand, within Rru_A0677 at 800.949 kb on + strand, within Rru_A0678 at 800.950 kb on - strand, within Rru_A0678 at 801.028 kb on + strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.030 kb on + strand, within Rru_A0678 at 801.030 kb on + strand, within Rru_A0678 at 801.030 kb on + strand, within Rru_A0678 at 801.065 kb on - strand, within Rru_A0678 at 801.077 kb on + strand, within Rru_A0678 at 801.077 kb on + strand, within Rru_A0678 at 801.078 kb on - strand, within Rru_A0678 at 801.087 kb on + strand, within Rru_A0678 at 801.263 kb on + strand, within Rru_A0678 at 801.315 kb on + strand, within Rru_A0678 at 801.315 kb on + strand, within Rru_A0678 at 801.337 kb on + strand, within Rru_A0678 at 801.337 kb on + strand, within Rru_A0678 at 801.337 kb on + strand, within Rru_A0678 at 801.338 kb on - strand, within Rru_A0678 at 801.356 kb on + strand, within Rru_A0678 at 801.358 kb on + strand, within Rru_A0678 at 801.358 kb on + strand, within Rru_A0678 at 801.358 kb on + strand, within Rru_A0678 at 801.359 kb on - strand, within Rru_A0678 at 801.359 kb on - strand, within Rru_A0678 at 801.359 kb on - strand, within Rru_A0678 at 801.359 kb on - strand, within Rru_A0678 at 801.508 kb on - strand, within Rru_A0678 at 801.521 kb on + strand, within Rru_A0678 at 801.521 kb on + strand, within Rru_A0678 at 801.521 kb on + strand, within Rru_A0678 at 801.521 kb on + strand, within Rru_A0678 at 801.522 kb on - strand, within Rru_A0678 at 801.522 kb on - strand, within Rru_A0678 at 801.764 kb on - strand, within Rru_A0678
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 800,275 - +1.6 800,275 - +0.1 800,275 - +0.2 800,275 - -0.3 800,364 + Rru_A0677 0.20 +0.8 800,404 + Rru_A0677 0.27 -0.0 800,404 + Rru_A0677 0.27 -0.0 800,404 + Rru_A0677 0.27 +1.0 800,405 - Rru_A0677 0.27 +0.9 800,427 + Rru_A0677 0.31 -0.0 800,428 - Rru_A0677 0.31 +0.6 800,572 + Rru_A0677 0.58 +0.4 800,572 + Rru_A0677 0.58 +1.0 800,573 - Rru_A0677 0.58 +0.3 800,573 - Rru_A0677 0.58 -0.0 800,573 - Rru_A0677 0.58 -0.0 800,949 + Rru_A0678 0.11 +0.4 800,950 - Rru_A0678 0.11 +0.6 801,028 + Rru_A0678 0.16 +0.2 801,029 - Rru_A0678 0.17 +1.5 801,029 - Rru_A0678 0.17 -0.3 801,029 - Rru_A0678 0.17 +0.3 801,029 - Rru_A0678 0.17 -0.0 801,029 - Rru_A0678 0.17 +1.0 801,029 - Rru_A0678 0.17 +0.5 801,029 - Rru_A0678 0.17 +0.2 801,029 - Rru_A0678 0.17 -0.5 801,029 - Rru_A0678 0.17 -0.1 801,030 + Rru_A0678 0.17 -0.0 801,030 + Rru_A0678 0.17 -0.0 801,030 + Rru_A0678 0.17 -0.0 801,065 - Rru_A0678 0.19 -0.0 801,077 + Rru_A0678 0.20 -0.0 801,077 + Rru_A0678 0.20 -0.0 801,078 - Rru_A0678 0.20 +0.7 801,087 + Rru_A0678 0.21 +1.6 801,263 + Rru_A0678 0.33 -0.0 801,315 + Rru_A0678 0.37 -0.4 801,315 + Rru_A0678 0.37 -0.0 801,337 + Rru_A0678 0.39 +0.8 801,337 + Rru_A0678 0.39 -0.0 801,337 + Rru_A0678 0.39 +0.8 801,338 - Rru_A0678 0.39 +0.3 801,356 + Rru_A0678 0.40 -0.0 801,358 + Rru_A0678 0.40 +0.1 801,358 + Rru_A0678 0.40 +2.0 801,358 + Rru_A0678 0.40 -0.0 801,359 - Rru_A0678 0.40 +0.3 801,359 - Rru_A0678 0.40 +1.2 801,359 - Rru_A0678 0.40 +0.4 801,359 - Rru_A0678 0.40 +0.6 801,508 - Rru_A0678 0.51 +0.4 801,521 + Rru_A0678 0.52 -0.0 801,521 + Rru_A0678 0.52 -2.3 801,521 + Rru_A0678 0.52 -0.5 801,521 + Rru_A0678 0.52 +0.5 801,522 - Rru_A0678 0.52 +1.8 801,522 - Rru_A0678 0.52 +0.2 801,764 - Rru_A0678 0.69 -0.0
Or see this region's nucleotide sequence