Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0238

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0236 and Rru_A0237 are separated by 1 nucleotidesRru_A0237 and Rru_A0238 are separated by 99 nucleotidesRru_A0238 and Rru_A0239 are separated by 61 nucleotidesRru_A0239 and Rru_A0240 are separated by 12 nucleotidesRru_A0240 and Rru_A0241 are separated by 93 nucleotides Rru_A0236: Rru_A0236 - Camphor resistance CrcB protein (NCBI), at 293,245 to 293,634 _A0236 Rru_A0237: Rru_A0237 - Protein of unknown function DUF190 (NCBI), at 293,636 to 293,992 _A0237 Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277 _A0238 Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563 _A0239 Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127 _A0240 Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040 _A0241 Position (kb) 294 295Strain fitness (log2 ratio) -1 0 1 2at 293.231 kb on - strandat 293.231 kb on - strandat 293.251 kb on + strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.255 kb on + strandat 293.256 kb on - strandat 293.364 kb on + strand, within Rru_A0236at 293.364 kb on + strand, within Rru_A0236at 293.364 kb on + strand, within Rru_A0236at 293.478 kb on + strand, within Rru_A0236at 293.478 kb on + strand, within Rru_A0236at 293.479 kb on - strand, within Rru_A0236at 293.479 kb on - strand, within Rru_A0236at 293.630 kb on + strandat 293.631 kb on - strandat 293.690 kb on + strand, within Rru_A0237at 293.691 kb on - strand, within Rru_A0237at 293.691 kb on - strand, within Rru_A0237at 293.692 kb on + strand, within Rru_A0237at 294.054 kb on - strandat 294.071 kb on - strandat 294.163 kb on + strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.516 kb on + strand, within Rru_A0239at 294.518 kb on + strand, within Rru_A0239at 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.544 kb on - strandat 294.872 kb on + strand, within Rru_A0240at 294.872 kb on + strand, within Rru_A0240at 294.873 kb on - strand, within Rru_A0240at 294.874 kb on + strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.894 kb on + strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.930 kb on + strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 295.029 kb on + strand, within Rru_A0240at 295.093 kb on - strandat 295.093 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.125 kb on + strandat 295.125 kb on + strandat 295.126 kb on - strandat 295.222 kb on + strandat 295.222 kb on + strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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293,231 - -0.0
293,231 - -0.0
293,251 + +0.1
293,252 - +0.9
293,252 - +0.2
293,252 - -0.3
293,252 - -0.0
293,252 - -0.0
293,252 - +0.7
293,252 - -1.6
293,252 - -0.0
293,252 - +1.1
293,252 - -0.0
293,255 + +1.0
293,256 - +1.2
293,364 + Rru_A0236 0.31 -0.0
293,364 + Rru_A0236 0.31 -0.0
293,364 + Rru_A0236 0.31 -0.0
293,478 + Rru_A0236 0.60 +0.3
293,478 + Rru_A0236 0.60 +0.9
293,479 - Rru_A0236 0.60 +1.8
293,479 - Rru_A0236 0.60 +0.8
293,630 + -0.0
293,631 - -1.0
293,690 + Rru_A0237 0.15 -0.4
293,691 - Rru_A0237 0.15 -0.0
293,691 - Rru_A0237 0.15 -0.0
293,692 + Rru_A0237 0.16 -0.0
294,054 - -1.0
294,071 - -0.0
294,163 + Rru_A0238 0.38 +0.4
294,164 - Rru_A0238 0.39 -0.2
294,164 - Rru_A0238 0.39 -0.0
294,164 - Rru_A0238 0.39 -0.0
294,492 + Rru_A0239 0.68 -0.0
294,492 + Rru_A0239 0.68 +0.3
294,492 + Rru_A0239 0.68 -0.0
294,493 - Rru_A0239 0.68 -1.0
294,493 - Rru_A0239 0.68 -0.1
294,493 - Rru_A0239 0.68 -0.0
294,493 - Rru_A0239 0.68 +0.3
294,493 - Rru_A0239 0.68 -0.0
294,494 + Rru_A0239 0.69 +0.7
294,494 + Rru_A0239 0.69 +0.0
294,495 - Rru_A0239 0.69 -0.0
294,495 - Rru_A0239 0.69 -1.6
294,516 + Rru_A0239 0.79 +0.7
294,518 + Rru_A0239 0.80 -0.0
294,543 + -0.0
294,543 + +0.4
294,543 + +1.4
294,543 + -0.0
294,543 + +0.7
294,543 + +0.4
294,543 + +0.3
294,543 + +0.2
294,544 - -0.0
294,872 + Rru_A0240 0.54 -0.0
294,872 + Rru_A0240 0.54 +0.6
294,873 - Rru_A0240 0.54 +0.1
294,874 + Rru_A0240 0.54 +1.2
294,875 - Rru_A0240 0.54 -0.0
294,875 - Rru_A0240 0.54 -0.0
294,875 - Rru_A0240 0.54 -0.1
294,875 - Rru_A0240 0.54 -0.0
294,894 + Rru_A0240 0.58 -1.0
294,895 - Rru_A0240 0.58 +0.2
294,895 - Rru_A0240 0.58 -0.0
294,895 - Rru_A0240 0.58 -0.0
294,896 + Rru_A0240 0.58 -1.0
294,896 + Rru_A0240 0.58 +0.2
294,897 - Rru_A0240 0.58 -0.1
294,897 - Rru_A0240 0.58 -0.0
294,930 + Rru_A0240 0.64 -0.0
294,931 - Rru_A0240 0.64 +1.3
294,931 - Rru_A0240 0.64 -0.1
294,931 - Rru_A0240 0.64 +1.0
294,931 - Rru_A0240 0.64 -0.1
295,029 + Rru_A0240 0.82 -0.4
295,093 - +1.0
295,093 - -0.0
295,114 - -0.0
295,114 - +2.3
295,114 - -1.0
295,114 - -0.5
295,125 + +0.8
295,125 + +0.6
295,126 - -0.0
295,222 + -1.0
295,222 + -0.0
295,223 - +0.7
295,223 - +0.6
295,223 - +0.7

Or see this region's nucleotide sequence