Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0190

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0189 and Rru_A0190 are separated by 227 nucleotidesRru_A0190 and Rru_A0191 are separated by 367 nucleotidesRru_A0191 and Rru_A0192 are separated by 97 nucleotides Rru_A0189: Rru_A0189 - ABC transporter, transmembrane region (NCBI), at 228,812 to 230,593 _A0189 Rru_A0190: Rru_A0190 - TonB-dependent receptor (NCBI), at 230,821 to 232,953 _A0190 Rru_A0191: Rru_A0191 - Aspartate 1-decarboxylase-like (NCBI), at 233,321 to 233,728 _A0191 Rru_A0192: Rru_A0192 - Multi antimicrobial extrusion protein MatE (NCBI), at 233,826 to 235,253 _A0192 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1at 229.910 kb on - strand, within Rru_A0189at 229.910 kb on - strand, within Rru_A0189at 229.910 kb on - strand, within Rru_A0189at 229.917 kb on + strand, within Rru_A0189at 230.040 kb on + strand, within Rru_A0189at 230.040 kb on + strand, within Rru_A0189at 230.040 kb on + strand, within Rru_A0189at 230.041 kb on - strand, within Rru_A0189at 230.041 kb on - strand, within Rru_A0189at 230.041 kb on - strand, within Rru_A0189at 230.073 kb on - strand, within Rru_A0189at 230.073 kb on - strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.131 kb on + strand, within Rru_A0189at 230.132 kb on - strand, within Rru_A0189at 230.132 kb on - strand, within Rru_A0189at 230.132 kb on - strand, within Rru_A0189at 230.346 kb on + strand, within Rru_A0189at 230.484 kb on + strandat 230.485 kb on - strandat 230.570 kb on + strandat 230.822 kb on + strandat 230.891 kb on + strandat 230.897 kb on + strandat 230.897 kb on + strandat 230.897 kb on + strandat 230.898 kb on - strandat 230.927 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 230.999 kb on + strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.098 kb on + strand, within Rru_A0190at 231.098 kb on + strand, within Rru_A0190at 231.116 kb on + strand, within Rru_A0190at 231.117 kb on - strand, within Rru_A0190at 231.195 kb on + strand, within Rru_A0190at 231.195 kb on + strand, within Rru_A0190at 231.196 kb on - strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.197 kb on + strand, within Rru_A0190at 231.198 kb on - strand, within Rru_A0190at 231.198 kb on - strand, within Rru_A0190at 231.198 kb on - strand, within Rru_A0190at 231.359 kb on + strand, within Rru_A0190at 231.359 kb on + strand, within Rru_A0190at 231.360 kb on - strand, within Rru_A0190at 231.362 kb on + strand, within Rru_A0190at 231.411 kb on - strand, within Rru_A0190at 231.422 kb on + strand, within Rru_A0190at 231.422 kb on + strand, within Rru_A0190at 231.456 kb on + strand, within Rru_A0190at 231.457 kb on - strand, within Rru_A0190at 231.457 kb on - strand, within Rru_A0190at 231.515 kb on + strand, within Rru_A0190at 231.516 kb on - strand, within Rru_A0190at 231.543 kb on + strand, within Rru_A0190at 231.563 kb on + strand, within Rru_A0190at 231.563 kb on + strand, within Rru_A0190at 231.564 kb on - strand, within Rru_A0190at 231.593 kb on + strand, within Rru_A0190at 231.593 kb on + strand, within Rru_A0190at 231.594 kb on - strand, within Rru_A0190at 231.594 kb on - strand, within Rru_A0190at 231.632 kb on + strand, within Rru_A0190at 231.632 kb on + strand, within Rru_A0190at 231.632 kb on + strand, within Rru_A0190at 231.633 kb on - strand, within Rru_A0190at 231.636 kb on + strand, within Rru_A0190at 231.636 kb on + strand, within Rru_A0190at 231.637 kb on - strand, within Rru_A0190at 231.637 kb on - strand, within Rru_A0190at 231.637 kb on - strand, within Rru_A0190at 231.722 kb on + strand, within Rru_A0190at 231.723 kb on - strand, within Rru_A0190at 231.807 kb on - strand, within Rru_A0190at 231.821 kb on + strand, within Rru_A0190at 231.821 kb on + strand, within Rru_A0190at 231.821 kb on + strand, within Rru_A0190at 231.822 kb on - strand, within Rru_A0190at 231.950 kb on + strand, within Rru_A0190at 232.006 kb on + strand, within Rru_A0190at 232.055 kb on + strand, within Rru_A0190at 232.085 kb on + strand, within Rru_A0190at 232.085 kb on + strand, within Rru_A0190at 232.086 kb on - strand, within Rru_A0190at 232.133 kb on + strand, within Rru_A0190at 232.241 kb on + strand, within Rru_A0190at 232.241 kb on + strand, within Rru_A0190at 232.241 kb on + strand, within Rru_A0190at 232.241 kb on + strand, within Rru_A0190at 232.242 kb on - strand, within Rru_A0190at 232.263 kb on + strand, within Rru_A0190at 232.264 kb on - strand, within Rru_A0190at 232.264 kb on - strand, within Rru_A0190at 232.436 kb on + strand, within Rru_A0190at 232.436 kb on + strand, within Rru_A0190at 232.487 kb on + strand, within Rru_A0190at 232.488 kb on - strand, within Rru_A0190at 232.488 kb on - strand, within Rru_A0190at 232.488 kb on - strand, within Rru_A0190at 232.490 kb on + strand, within Rru_A0190at 232.490 kb on + strand, within Rru_A0190at 232.491 kb on - strand, within Rru_A0190at 232.491 kb on - strand, within Rru_A0190at 232.491 kb on - strand, within Rru_A0190at 232.491 kb on - strand, within Rru_A0190at 232.491 kb on - strand, within Rru_A0190at 232.491 kb on - strand, within Rru_A0190at 232.532 kb on + strand, within Rru_A0190at 232.532 kb on + strand, within Rru_A0190at 232.532 kb on + strand, within Rru_A0190at 232.532 kb on + strand, within Rru_A0190at 232.532 kb on + strand, within Rru_A0190at 232.533 kb on - strand, within Rru_A0190at 232.533 kb on - strand, within Rru_A0190at 232.533 kb on - strand, within Rru_A0190at 233.022 kb on + strandat 233.069 kb on + strandat 233.070 kb on - strandat 233.081 kb on + strandat 233.081 kb on + strandat 233.081 kb on + strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.082 kb on - strandat 233.115 kb on - strandat 233.517 kb on + strand, within Rru_A0191at 233.517 kb on + strand, within Rru_A0191at 233.517 kb on + strand, within Rru_A0191at 233.517 kb on + strand, within Rru_A0191at 233.517 kb on + strand, within Rru_A0191at 233.517 kb on + strand, within Rru_A0191at 233.517 kb on + strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.518 kb on - strand, within Rru_A0191at 233.635 kb on + strand, within Rru_A0191at 233.635 kb on + strand, within Rru_A0191at 233.635 kb on + strand, within Rru_A0191at 233.636 kb on - strand, within Rru_A0191at 233.636 kb on - strand, within Rru_A0191at 233.681 kb on - strand, within Rru_A0191at 233.681 kb on - strand, within Rru_A0191at 233.681 kb on - strand, within Rru_A0191at 233.750 kb on + strandat 233.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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229,910 - Rru_A0189 0.62 +0.6
229,910 - Rru_A0189 0.62 -0.0
229,910 - Rru_A0189 0.62 -0.0
229,917 + Rru_A0189 0.62 +0.5
230,040 + Rru_A0189 0.69 +1.0
230,040 + Rru_A0189 0.69 -0.0
230,040 + Rru_A0189 0.69 -0.0
230,041 - Rru_A0189 0.69 -0.0
230,041 - Rru_A0189 0.69 -1.0
230,041 - Rru_A0189 0.69 -1.0
230,073 - Rru_A0189 0.71 -0.1
230,073 - Rru_A0189 0.71 -0.0
230,131 + Rru_A0189 0.74 -0.0
230,131 + Rru_A0189 0.74 +0.6
230,131 + Rru_A0189 0.74 +1.1
230,131 + Rru_A0189 0.74 -0.0
230,132 - Rru_A0189 0.74 -3.0
230,132 - Rru_A0189 0.74 -1.0
230,132 - Rru_A0189 0.74 -0.0
230,346 + Rru_A0189 0.86 -0.0
230,484 + +0.7
230,485 - -0.7
230,570 + -0.0
230,822 + -0.0
230,891 + -1.3
230,897 + -0.0
230,897 + -0.5
230,897 + -0.0
230,898 - -0.0
230,927 + -0.0
230,999 + -0.0
230,999 + -0.2
230,999 + +0.4
230,999 + -0.6
230,999 + -0.0
230,999 + -0.0
231,000 - -0.5
231,000 - +0.2
231,000 - -0.0
231,000 - +0.9
231,098 + Rru_A0190 0.13 +0.1
231,098 + Rru_A0190 0.13 -0.0
231,116 + Rru_A0190 0.14 -0.0
231,117 - Rru_A0190 0.14 -0.2
231,195 + Rru_A0190 0.18 -1.0
231,195 + Rru_A0190 0.18 -0.0
231,196 - Rru_A0190 0.18 -0.0
231,197 + Rru_A0190 0.18 -0.0
231,197 + Rru_A0190 0.18 -1.6
231,197 + Rru_A0190 0.18 +0.4
231,197 + Rru_A0190 0.18 -0.1
231,197 + Rru_A0190 0.18 +0.1
231,197 + Rru_A0190 0.18 +0.0
231,197 + Rru_A0190 0.18 -0.0
231,198 - Rru_A0190 0.18 -0.1
231,198 - Rru_A0190 0.18 +0.2
231,198 - Rru_A0190 0.18 -0.0
231,359 + Rru_A0190 0.25 +0.0
231,359 + Rru_A0190 0.25 -1.1
231,360 - Rru_A0190 0.25 +0.2
231,362 + Rru_A0190 0.25 -0.2
231,411 - Rru_A0190 0.28 -0.0
231,422 + Rru_A0190 0.28 -0.0
231,422 + Rru_A0190 0.28 +0.3
231,456 + Rru_A0190 0.30 -0.6
231,457 - Rru_A0190 0.30 -0.0
231,457 - Rru_A0190 0.30 +0.4
231,515 + Rru_A0190 0.33 +0.9
231,516 - Rru_A0190 0.33 -1.2
231,543 + Rru_A0190 0.34 -0.0
231,563 + Rru_A0190 0.35 -0.0
231,563 + Rru_A0190 0.35 -0.0
231,564 - Rru_A0190 0.35 +0.3
231,593 + Rru_A0190 0.36 +0.1
231,593 + Rru_A0190 0.36 -0.2
231,594 - Rru_A0190 0.36 -0.0
231,594 - Rru_A0190 0.36 -0.0
231,632 + Rru_A0190 0.38 -0.0
231,632 + Rru_A0190 0.38 -0.1
231,632 + Rru_A0190 0.38 -0.0
231,633 - Rru_A0190 0.38 -0.0
231,636 + Rru_A0190 0.38 -0.0
231,636 + Rru_A0190 0.38 -0.0
231,637 - Rru_A0190 0.38 -0.0
231,637 - Rru_A0190 0.38 -0.0
231,637 - Rru_A0190 0.38 +0.2
231,722 + Rru_A0190 0.42 +1.5
231,723 - Rru_A0190 0.42 +1.4
231,807 - Rru_A0190 0.46 -0.0
231,821 + Rru_A0190 0.47 -0.0
231,821 + Rru_A0190 0.47 +0.1
231,821 + Rru_A0190 0.47 +0.2
231,822 - Rru_A0190 0.47 -0.0
231,950 + Rru_A0190 0.53 -0.2
232,006 + Rru_A0190 0.56 +0.3
232,055 + Rru_A0190 0.58 +0.8
232,085 + Rru_A0190 0.59 +0.2
232,085 + Rru_A0190 0.59 +0.0
232,086 - Rru_A0190 0.59 -1.6
232,133 + Rru_A0190 0.62 +1.2
232,241 + Rru_A0190 0.67 +1.0
232,241 + Rru_A0190 0.67 -0.0
232,241 + Rru_A0190 0.67 -0.0
232,241 + Rru_A0190 0.67 +0.1
232,242 - Rru_A0190 0.67 -0.0
232,263 + Rru_A0190 0.68 +1.1
232,264 - Rru_A0190 0.68 -0.0
232,264 - Rru_A0190 0.68 -0.0
232,436 + Rru_A0190 0.76 +0.6
232,436 + Rru_A0190 0.76 -0.0
232,487 + Rru_A0190 0.78 -0.0
232,488 - Rru_A0190 0.78 -0.0
232,488 - Rru_A0190 0.78 +0.6
232,488 - Rru_A0190 0.78 +0.5
232,490 + Rru_A0190 0.78 -0.0
232,490 + Rru_A0190 0.78 +0.8
232,491 - Rru_A0190 0.78 +0.4
232,491 - Rru_A0190 0.78 -0.0
232,491 - Rru_A0190 0.78 -0.4
232,491 - Rru_A0190 0.78 -0.0
232,491 - Rru_A0190 0.78 +0.3
232,491 - Rru_A0190 0.78 -0.5
232,532 + Rru_A0190 0.80 -0.0
232,532 + Rru_A0190 0.80 +0.3
232,532 + Rru_A0190 0.80 -1.6
232,532 + Rru_A0190 0.80 +1.4
232,532 + Rru_A0190 0.80 +0.0
232,533 - Rru_A0190 0.80 -0.0
232,533 - Rru_A0190 0.80 -0.0
232,533 - Rru_A0190 0.80 -1.0
233,022 + +0.2
233,069 + -0.0
233,070 - +0.2
233,081 + -0.0
233,081 + +0.2
233,081 + +0.9
233,082 - -0.1
233,082 - -0.0
233,082 - -0.0
233,082 - -0.0
233,082 - -0.0
233,082 - -0.0
233,082 - -0.0
233,082 - -0.0
233,115 - -0.1
233,517 + Rru_A0191 0.48 -0.0
233,517 + Rru_A0191 0.48 -0.2
233,517 + Rru_A0191 0.48 +0.5
233,517 + Rru_A0191 0.48 -1.2
233,517 + Rru_A0191 0.48 +0.8
233,517 + Rru_A0191 0.48 -0.0
233,517 + Rru_A0191 0.48 +0.7
233,518 - Rru_A0191 0.48 -1.0
233,518 - Rru_A0191 0.48 +0.6
233,518 - Rru_A0191 0.48 -0.0
233,518 - Rru_A0191 0.48 +0.5
233,518 - Rru_A0191 0.48 -0.0
233,518 - Rru_A0191 0.48 +0.8
233,518 - Rru_A0191 0.48 -0.0
233,518 - Rru_A0191 0.48 -0.0
233,635 + Rru_A0191 0.77 -0.0
233,635 + Rru_A0191 0.77 +0.1
233,635 + Rru_A0191 0.77 +0.1
233,636 - Rru_A0191 0.77 +0.4
233,636 - Rru_A0191 0.77 -0.0
233,681 - Rru_A0191 0.88 -0.0
233,681 - Rru_A0191 0.88 +0.2
233,681 - Rru_A0191 0.88 -0.0
233,750 + +1.3
233,780 - -0.0

Or see this region's nucleotide sequence