Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24740

Experiment: R2A with Nickel (II) chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24735 and RR42_RS24740 are separated by 929 nucleotidesRR42_RS24740 and RR42_RS24745 are separated by 99 nucleotidesRR42_RS24745 and RR42_RS24750 are separated by 251 nucleotides RR42_RS24735: RR42_RS24735 - membrane protein, at 885,851 to 886,942 _RS24735 RR42_RS24740: RR42_RS24740 - hydrolase, at 887,872 to 888,567 _RS24740 RR42_RS24745: RR42_RS24745 - hypothetical protein, at 888,667 to 889,308 _RS24745 RR42_RS24750: RR42_RS24750 - LysR family transcriptional regulator, at 889,560 to 889,904 _RS24750 Position (kb) 887 888 889Strain fitness (log2 ratio) -2 -1 0 1at 886.935 kb on + strandat 886.967 kb on + strandat 886.968 kb on - strandat 886.969 kb on + strandat 887.004 kb on - strandat 887.021 kb on - strandat 887.189 kb on - strandat 887.189 kb on - strandat 887.287 kb on + strandat 887.351 kb on - strandat 887.376 kb on + strandat 887.376 kb on + strandat 887.376 kb on + strandat 887.377 kb on - strandat 887.404 kb on + strandat 887.408 kb on - strandat 887.408 kb on - strandat 887.408 kb on - strandat 887.541 kb on + strandat 887.542 kb on - strandat 887.557 kb on + strandat 887.558 kb on - strandat 887.558 kb on - strandat 887.558 kb on - strandat 887.596 kb on + strandat 887.597 kb on - strandat 887.597 kb on - strandat 887.597 kb on - strandat 887.671 kb on - strandat 887.702 kb on + strandat 887.703 kb on - strandat 887.744 kb on - strandat 887.756 kb on - strandat 887.756 kb on - strandat 887.756 kb on - strandat 887.756 kb on - strandat 887.756 kb on - strandat 887.756 kb on - strandat 887.860 kb on + strandat 887.918 kb on + strandat 887.959 kb on - strand, within RR42_RS24740at 887.960 kb on + strand, within RR42_RS24740at 887.960 kb on + strand, within RR42_RS24740at 887.975 kb on - strand, within RR42_RS24740at 888.052 kb on + strand, within RR42_RS24740at 888.053 kb on - strand, within RR42_RS24740at 888.170 kb on - strand, within RR42_RS24740at 888.170 kb on - strand, within RR42_RS24740at 888.202 kb on + strand, within RR42_RS24740at 888.202 kb on + strand, within RR42_RS24740at 888.203 kb on - strand, within RR42_RS24740at 888.203 kb on - strand, within RR42_RS24740at 888.299 kb on + strand, within RR42_RS24740at 888.303 kb on - strand, within RR42_RS24740at 888.324 kb on + strand, within RR42_RS24740at 888.324 kb on + strand, within RR42_RS24740at 888.324 kb on + strand, within RR42_RS24740at 888.324 kb on + strand, within RR42_RS24740at 888.324 kb on + strand, within RR42_RS24740at 888.325 kb on - strand, within RR42_RS24740at 888.325 kb on - strand, within RR42_RS24740at 888.325 kb on - strand, within RR42_RS24740at 888.373 kb on - strand, within RR42_RS24740at 888.373 kb on - strand, within RR42_RS24740at 888.417 kb on + strand, within RR42_RS24740at 888.417 kb on + strand, within RR42_RS24740at 888.417 kb on + strand, within RR42_RS24740at 888.573 kb on + strandat 888.573 kb on + strandat 888.574 kb on - strandat 888.574 kb on - strandat 888.574 kb on - strandat 888.636 kb on - strandat 888.636 kb on - strandat 888.636 kb on - strandat 888.636 kb on - strandat 888.663 kb on - strandat 888.755 kb on + strand, within RR42_RS24745at 888.756 kb on - strand, within RR42_RS24745at 888.756 kb on - strand, within RR42_RS24745at 888.756 kb on - strand, within RR42_RS24745at 888.895 kb on + strand, within RR42_RS24745at 888.908 kb on + strand, within RR42_RS24745at 888.909 kb on - strand, within RR42_RS24745at 889.024 kb on - strand, within RR42_RS24745at 889.134 kb on - strand, within RR42_RS24745at 889.137 kb on - strand, within RR42_RS24745at 889.137 kb on - strand, within RR42_RS24745at 889.137 kb on - strand, within RR42_RS24745at 889.169 kb on + strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.366 kb on - strandat 889.373 kb on + strandat 889.373 kb on + strandat 889.446 kb on + strandat 889.446 kb on + strandat 889.447 kb on - strandat 889.459 kb on + strandat 889.470 kb on + strandat 889.521 kb on + strandat 889.521 kb on + strandat 889.521 kb on + strandat 889.521 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
remove
886,935 + -0.5
886,967 + -0.2
886,968 - -0.4
886,969 + -0.1
887,004 - -0.3
887,021 - +0.2
887,189 - -0.0
887,189 - -0.1
887,287 + -0.2
887,351 - +0.9
887,376 + -1.5
887,376 + -0.8
887,376 + -0.2
887,377 - -0.0
887,404 + +0.0
887,408 - -0.3
887,408 - -0.3
887,408 - -0.3
887,541 + -0.7
887,542 - -1.2
887,557 + +0.1
887,558 - +0.2
887,558 - -0.7
887,558 - -0.3
887,596 + -2.1
887,597 - -0.8
887,597 - -0.6
887,597 - -1.9
887,671 - +0.1
887,702 + +0.0
887,703 - -1.3
887,744 - +0.9
887,756 - -1.1
887,756 - +0.0
887,756 - -0.3
887,756 - +0.3
887,756 - +0.6
887,756 - +1.6
887,860 + +0.1
887,918 + -0.5
887,959 - RR42_RS24740 0.12 -0.7
887,960 + RR42_RS24740 0.13 +0.2
887,960 + RR42_RS24740 0.13 +0.5
887,975 - RR42_RS24740 0.15 -0.5
888,052 + RR42_RS24740 0.26 -0.3
888,053 - RR42_RS24740 0.26 -0.1
888,170 - RR42_RS24740 0.43 -0.3
888,170 - RR42_RS24740 0.43 +0.0
888,202 + RR42_RS24740 0.47 +1.2
888,202 + RR42_RS24740 0.47 -0.3
888,203 - RR42_RS24740 0.48 -0.0
888,203 - RR42_RS24740 0.48 -0.1
888,299 + RR42_RS24740 0.61 -0.3
888,303 - RR42_RS24740 0.62 +0.1
888,324 + RR42_RS24740 0.65 -0.9
888,324 + RR42_RS24740 0.65 -0.2
888,324 + RR42_RS24740 0.65 -0.3
888,324 + RR42_RS24740 0.65 -0.9
888,324 + RR42_RS24740 0.65 +0.4
888,325 - RR42_RS24740 0.65 -1.1
888,325 - RR42_RS24740 0.65 -0.3
888,325 - RR42_RS24740 0.65 +0.2
888,373 - RR42_RS24740 0.72 +0.8
888,373 - RR42_RS24740 0.72 -0.0
888,417 + RR42_RS24740 0.78 -1.5
888,417 + RR42_RS24740 0.78 -0.1
888,417 + RR42_RS24740 0.78 -0.3
888,573 + -0.3
888,573 + +0.1
888,574 - -0.7
888,574 - -0.6
888,574 - -0.1
888,636 - -0.7
888,636 - -0.2
888,636 - +1.5
888,636 - +1.1
888,663 - +0.4
888,755 + RR42_RS24745 0.14 -0.1
888,756 - RR42_RS24745 0.14 -0.8
888,756 - RR42_RS24745 0.14 -0.5
888,756 - RR42_RS24745 0.14 +0.6
888,895 + RR42_RS24745 0.36 -0.0
888,908 + RR42_RS24745 0.38 +0.1
888,909 - RR42_RS24745 0.38 +0.6
889,024 - RR42_RS24745 0.56 -0.3
889,134 - RR42_RS24745 0.73 +0.2
889,137 - RR42_RS24745 0.73 -0.6
889,137 - RR42_RS24745 0.73 +0.3
889,137 - RR42_RS24745 0.73 +0.2
889,169 + RR42_RS24745 0.78 -0.1
889,170 - RR42_RS24745 0.78 -0.5
889,170 - RR42_RS24745 0.78 +0.9
889,170 - RR42_RS24745 0.78 -0.6
889,170 - RR42_RS24745 0.78 -0.9
889,366 - -0.4
889,373 + -0.1
889,373 + +0.4
889,446 + -0.0
889,446 + -0.3
889,447 - +0.7
889,459 + -0.6
889,470 + -0.9
889,521 + -0.2
889,521 + -0.2
889,521 + -0.3
889,521 + +0.5

Or see this region's nucleotide sequence