Experiment: R2A with Nickel (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03155 and RR42_RS03160 are separated by 160 nucleotides RR42_RS03160 and RR42_RS03165 are separated by 57 nucleotides RR42_RS03165 and RR42_RS03170 are separated by 121 nucleotides
RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174
_RS03155
RR42_RS03160: RR42_RS03160 - hypothetical protein, at 698,335 to 698,775
_RS03160
RR42_RS03165: RR42_RS03165 - ADP-heptose--LPS heptosyltransferase, at 698,833 to 699,855
_RS03165
RR42_RS03170: RR42_RS03170 - hypothetical protein, at 699,977 to 700,171
_RS03170
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.966 kb on + strand, within RR42_RS03155 at 698.298 kb on + strand at 698.298 kb on + strand at 698.337 kb on - strand at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.705 kb on - strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.732 kb on - strand at 698.732 kb on - strand at 698.732 kb on - strand at 698.732 kb on - strand at 700.017 kb on + strand, within RR42_RS03170 at 700.017 kb on + strand, within RR42_RS03170 at 700.018 kb on - strand, within RR42_RS03170 at 700.018 kb on - strand, within RR42_RS03170 at 700.032 kb on + strand, within RR42_RS03170 at 700.032 kb on + strand, within RR42_RS03170 at 700.086 kb on + strand, within RR42_RS03170 at 700.087 kb on - strand, within RR42_RS03170 at 700.087 kb on - strand, within RR42_RS03170 at 700.199 kb on - strand at 700.199 kb on - strand at 700.221 kb on - strand at 700.221 kb on - strand at 700.221 kb on - strand at 700.221 kb on - strand at 700.230 kb on + strand at 700.231 kb on - strand at 700.350 kb on - strand at 700.381 kb on + strand at 700.428 kb on + strand at 700.477 kb on + strand at 700.496 kb on - strand at 700.496 kb on - strand at 700.805 kb on + strand at 700.806 kb on - strand at 700.806 kb on - strand at 700.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM remove 697,864 + RR42_RS03155 0.68 +0.3 697,864 + RR42_RS03155 0.68 -0.0 697,864 + RR42_RS03155 0.68 +1.1 697,864 + RR42_RS03155 0.68 +0.1 697,966 + RR42_RS03155 0.79 -0.3 698,298 + -0.1 698,298 + -0.4 698,337 - +0.4 698,447 + RR42_RS03160 0.25 -1.9 698,447 + RR42_RS03160 0.25 -0.8 698,447 + RR42_RS03160 0.25 -0.0 698,447 + RR42_RS03160 0.25 +0.8 698,447 + RR42_RS03160 0.25 +0.3 698,447 + RR42_RS03160 0.25 +1.0 698,448 - RR42_RS03160 0.26 +0.1 698,448 - RR42_RS03160 0.26 +0.1 698,448 - RR42_RS03160 0.26 -2.1 698,448 - RR42_RS03160 0.26 +0.6 698,462 + RR42_RS03160 0.29 +0.5 698,462 + RR42_RS03160 0.29 +0.3 698,462 + RR42_RS03160 0.29 +0.3 698,463 - RR42_RS03160 0.29 +0.2 698,463 - RR42_RS03160 0.29 +0.1 698,463 - RR42_RS03160 0.29 +0.9 698,463 - RR42_RS03160 0.29 +0.7 698,463 - RR42_RS03160 0.29 -0.5 698,538 + RR42_RS03160 0.46 +1.0 698,538 + RR42_RS03160 0.46 +0.2 698,538 + RR42_RS03160 0.46 -0.5 698,539 - RR42_RS03160 0.46 -0.4 698,539 - RR42_RS03160 0.46 +0.2 698,539 - RR42_RS03160 0.46 +0.2 698,705 - RR42_RS03160 0.84 -2.8 698,731 + RR42_RS03160 0.90 +0.2 698,731 + RR42_RS03160 0.90 +0.4 698,731 + RR42_RS03160 0.90 +0.2 698,731 + RR42_RS03160 0.90 -0.1 698,731 + RR42_RS03160 0.90 +0.4 698,731 + RR42_RS03160 0.90 -1.1 698,731 + RR42_RS03160 0.90 -1.2 698,732 - +0.3 698,732 - +0.4 698,732 - +1.2 698,732 - +0.2 700,017 + RR42_RS03170 0.21 -1.3 700,017 + RR42_RS03170 0.21 -1.1 700,018 - RR42_RS03170 0.21 -0.7 700,018 - RR42_RS03170 0.21 -1.6 700,032 + RR42_RS03170 0.28 -1.2 700,032 + RR42_RS03170 0.28 +0.1 700,086 + RR42_RS03170 0.56 -1.2 700,087 - RR42_RS03170 0.56 -0.4 700,087 - RR42_RS03170 0.56 +0.4 700,199 - +0.1 700,199 - -0.3 700,221 - +0.6 700,221 - -0.3 700,221 - +0.5 700,221 - +0.7 700,230 + -1.4 700,231 - +0.5 700,350 - +0.2 700,381 + -0.5 700,428 + +0.2 700,477 + +0.0 700,496 - -0.5 700,496 - -1.7 700,805 + +0.1 700,806 - +0.3 700,806 - -0.6 700,814 + +1.0
Or see this region's nucleotide sequence